Wall clock time and date at job start Mon Mar 30 2020 04:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.50696 * 109.47683 * 240.00009 * 2 1 3 5 5 H 1.07997 * 120.00408 * 239.99956 * 4 2 1 6 6 C 1.37885 * 119.99883 * 59.99653 * 4 2 1 7 7 N 1.31508 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47025 * 59.99930 * 8 6 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47148 * 300.00133 * 8 6 4 12 12 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 13 13 N 1.46506 * 109.47237 * 300.00146 * 12 2 1 14 14 C 1.34773 * 119.99969 * 179.72043 * 13 12 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.46670 * 15.00179 * 16 14 13 18 18 F 1.39901 * 109.47120 * 255.00511 * 16 14 13 19 19 C 1.52995 * 109.47196 * 135.00109 * 16 14 13 20 20 C 1.53935 * 113.73093 * 161.72879 * 19 16 14 21 21 N 1.47959 * 86.17943 * 221.91943 * 20 19 16 22 22 C 1.47958 * 90.76445 * 24.69297 * 21 20 19 23 23 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 24 24 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 25 25 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 28 28 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 29 29 H 0.96999 * 119.99905 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47671 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47454 * 60.00483 * 12 2 1 32 32 H 0.97005 * 119.99811 * 0.02562 * 13 12 2 33 33 H 1.08998 * 112.94145 * 293.43558 * 19 16 14 34 34 H 1.08994 * 113.76057 * 336.24093 * 20 19 16 35 35 H 1.09000 * 113.75972 * 107.60749 * 20 19 16 36 36 H 1.00899 * 111.00775 * 271.79577 * 21 20 19 37 37 H 1.09001 * 113.76537 * 220.99388 * 22 21 20 38 38 H 1.08999 * 113.76069 * 89.62246 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0080 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0305 2.4455 14 6 1.8726 -0.4943 3.6695 15 8 2.5661 -1.4830 3.7808 16 6 1.3698 0.2158 4.9000 17 1 0.5666 0.8986 4.6227 18 9 2.4166 0.9390 5.4816 19 6 0.8417 -0.8125 5.9023 20 6 0.7195 -0.2718 7.3383 21 7 1.2750 -1.5734 7.7701 22 6 1.9275 -1.7537 6.4545 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 0.7095 1.1617 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9936 0.7579 2.3564 33 1 -0.0499 -1.3307 5.5494 34 1 1.3732 0.5753 7.5458 35 1 -0.3090 -0.1053 7.6589 36 1 0.5413 -2.2526 7.9060 37 1 1.8643 -2.7711 6.0685 38 1 2.9347 -1.3400 6.4034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316256847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:35 Heat of formation + Delta-G solvation = -56.843910 kcal Electronic energy + Delta-G solvation = -19925.465194 eV Core-core repulsion = 16718.325023 eV Total energy + Delta-G solvation = -3207.140171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.94926 -39.79797 -38.84561 -36.43309 -33.44253 -31.24595 -30.24435 -26.28005 -26.02111 -25.80263 -25.32563 -23.95957 -20.70409 -20.00970 -18.90503 -17.65513 -17.03257 -16.24267 -16.15328 -15.88878 -14.96184 -14.80394 -14.38678 -14.02507 -13.55514 -13.01523 -12.92255 -12.80120 -12.73199 -12.60918 -12.27458 -12.12393 -11.46106 -11.25703 -11.18883 -10.90372 -10.86461 -10.76767 -10.46020 -10.25339 -9.71465 -9.63491 -9.31647 -8.87134 -8.68586 -8.57985 -8.40630 -6.07370 -4.17856 2.68549 3.26845 3.27682 3.31412 3.36580 3.78452 4.14696 4.34239 4.36217 4.63517 4.75619 4.92066 5.06273 5.19516 5.25943 5.58722 5.62555 5.68844 5.81164 6.10121 6.12496 6.22297 6.41503 6.64671 6.74015 6.82390 6.87809 6.93672 7.11584 7.26939 7.48198 7.63252 7.82821 7.93856 8.06377 8.30316 8.43772 8.82264 9.48286 10.94058 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.046932 B = 0.004266 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.459602 B = 6562.243975 C = 6745.688582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.484 3.516 15 O -0.530 6.530 16 C 0.088 3.912 17 H 0.098 0.902 18 F -0.188 7.188 19 C -0.180 4.180 20 C 0.027 3.973 21 N -0.663 5.663 22 C 0.045 3.955 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.334 0.666 37 H 0.078 0.922 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 0.466 13.920 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.008 3.992 13 N -0.357 5.357 14 C 0.266 3.734 15 O -0.406 6.406 16 C 0.047 3.953 17 H 0.116 0.884 18 F -0.169 7.169 19 C -0.200 4.200 20 C -0.103 4.103 21 N -0.290 5.290 22 C -0.085 4.085 23 H 0.024 0.976 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.724 0.035 14.417 14.673 hybrid contribution -0.734 -0.156 -1.752 1.906 sum -3.458 -0.122 12.665 13.129 Atomic orbital electron populations 1.21836 0.97719 0.99186 1.00118 1.18369 0.92823 0.92831 0.90495 1.21842 0.98699 0.98249 1.00125 1.20925 1.31702 1.12201 0.89841 0.92463 1.24875 0.94787 0.94898 0.98870 1.69784 1.36534 1.22662 1.23423 0.86617 0.79279 0.79772 0.82108 1.20270 1.21287 1.20236 1.21812 0.98393 0.95839 0.83184 1.46422 1.51933 1.31334 1.05968 1.20727 0.81993 0.85662 0.85025 1.90691 1.37516 1.25831 1.86600 1.21427 0.88095 0.93787 0.91969 0.88404 1.92854 1.60153 1.78605 1.85266 1.24876 1.01390 0.97890 0.95884 1.23693 1.00587 0.95320 0.90714 1.65100 1.26449 1.03994 1.33436 1.23522 0.98477 0.99552 0.86905 0.97582 0.89494 0.95406 0.95347 0.89497 0.97534 0.92885 0.92410 0.92441 0.76480 0.87330 0.87710 0.90615 0.85147 0.90311 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.15 0.30 -2.53 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.15 9.35 55.43 0.52 -22.63 16 8 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.90 4.96 -60.29 -0.30 -12.20 16 14 C 0.48 7.89 7.17 -10.98 -0.08 7.81 16 15 O -0.53 -10.30 15.26 5.56 0.08 -10.22 16 16 C 0.09 1.09 3.90 -27.88 -0.11 0.98 16 17 H 0.10 0.93 7.99 -51.93 -0.42 0.51 16 18 F -0.19 -2.64 15.47 2.25 0.03 -2.60 16 19 C -0.18 -1.95 3.85 -89.69 -0.35 -2.29 16 20 C 0.03 0.25 8.35 -2.77 -0.02 0.23 16 21 N -0.66 -7.13 8.55 -117.03 -1.00 -8.13 16 22 C 0.04 0.56 6.72 -2.77 -0.02 0.54 16 23 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 24 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 6.00 6.05 -40.82 -0.25 5.75 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.07 7.27 -51.93 -0.38 0.69 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.33 2.93 8.89 -39.29 -0.35 2.58 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.51 7.71 -51.93 -0.40 1.11 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -27.92 305.59 -7.15 -35.07 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.63 Total: 6.44 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.44 Total: -5.73 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.78 Total: -42.95 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.92 -7.15 -35.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316256847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.775 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds