Wall clock time and date at job start Mon Mar 30 2020 04:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.50696 * 109.47683 * 240.00009 * 2 1 3 5 5 H 1.07997 * 120.00408 * 239.99956 * 4 2 1 6 6 C 1.37885 * 119.99883 * 59.99653 * 4 2 1 7 7 N 1.31508 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47025 * 59.99930 * 8 6 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47148 * 300.00133 * 8 6 4 12 12 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 13 13 N 1.46506 * 109.47237 * 300.00146 * 12 2 1 14 14 C 1.34773 * 119.99969 * 179.72043 * 13 12 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.46670 * 15.00179 * 16 14 13 18 18 F 1.39901 * 109.47120 * 255.00511 * 16 14 13 19 19 C 1.52995 * 109.47196 * 135.00109 * 16 14 13 20 20 C 1.53935 * 113.73093 * 161.72879 * 19 16 14 21 21 N 1.47959 * 86.17943 * 221.91943 * 20 19 16 22 22 C 1.47958 * 90.76445 * 24.69297 * 21 20 19 23 23 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 24 24 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 25 25 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 28 28 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 29 29 H 0.96999 * 119.99905 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47671 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47454 * 60.00483 * 12 2 1 32 32 H 0.97005 * 119.99811 * 0.02562 * 13 12 2 33 33 H 1.08998 * 112.94145 * 293.43558 * 19 16 14 34 34 H 1.08994 * 113.76057 * 336.24093 * 20 19 16 35 35 H 1.09000 * 113.75972 * 107.60749 * 20 19 16 36 36 H 1.00899 * 111.00775 * 271.79577 * 21 20 19 37 37 H 1.09001 * 113.76537 * 220.99388 * 22 21 20 38 38 H 1.08999 * 113.76069 * 89.62246 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0080 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0305 2.4455 14 6 1.8726 -0.4943 3.6695 15 8 2.5661 -1.4830 3.7808 16 6 1.3698 0.2158 4.9000 17 1 0.5666 0.8986 4.6227 18 9 2.4166 0.9390 5.4816 19 6 0.8417 -0.8125 5.9023 20 6 0.7195 -0.2718 7.3383 21 7 1.2750 -1.5734 7.7701 22 6 1.9275 -1.7537 6.4545 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 0.7095 1.1617 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9936 0.7579 2.3564 33 1 -0.0499 -1.3307 5.5494 34 1 1.3732 0.5753 7.5458 35 1 -0.3090 -0.1053 7.6589 36 1 0.5413 -2.2526 7.9060 37 1 1.8643 -2.7711 6.0685 38 1 2.9347 -1.3400 6.4034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316256847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:35 Heat of formation + Delta-G solvation = -76.857333 kcal Electronic energy + Delta-G solvation = -19926.333041 eV Core-core repulsion = 16718.325023 eV Total energy + Delta-G solvation = -3208.008018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.99574 -40.95508 -39.96292 -38.11143 -35.08709 -32.92880 -31.39969 -27.65745 -27.57265 -27.14633 -26.93509 -25.23314 -21.93802 -21.01335 -20.62468 -18.96035 -17.99410 -17.74512 -17.27711 -17.18145 -16.62353 -16.26248 -15.80732 -15.46702 -14.80533 -14.53351 -14.29599 -14.13247 -13.91847 -13.59384 -13.51665 -13.23940 -13.17974 -13.06108 -12.68665 -12.64123 -12.26584 -12.14465 -12.02558 -11.78045 -11.50025 -11.28688 -10.79697 -10.66733 -10.40738 -10.04827 -9.51036 -8.03277 -6.19005 1.38887 1.43604 1.45302 1.51350 2.02899 2.46209 2.95624 3.20617 3.23150 3.43614 3.64072 3.79522 3.99268 4.19022 4.39851 4.47745 4.52515 4.69494 4.70546 4.78638 4.81878 4.95961 4.99243 5.04211 5.08210 5.18045 5.20523 5.30236 5.52436 5.66116 5.66552 6.14358 6.20167 6.39668 6.42111 6.49606 6.84711 7.12036 7.48833 8.95300 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.046932 B = 0.004266 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.459602 B = 6562.243975 C = 6745.688582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.146 3.854 13 N -0.700 5.700 14 C 0.481 3.519 15 O -0.565 6.565 16 C 0.093 3.907 17 H 0.140 0.860 18 F -0.197 7.197 19 C -0.174 4.174 20 C 0.036 3.964 21 N -0.672 5.672 22 C 0.036 3.964 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.412 0.588 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.347 0.653 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 1.152 15.139 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.265 3.735 15 O -0.444 6.444 16 C 0.053 3.947 17 H 0.157 0.843 18 F -0.178 7.178 19 C -0.194 4.194 20 C -0.093 4.093 21 N -0.300 5.300 22 C -0.093 4.093 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.163 0.837 37 H 0.088 0.912 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.150 0.738 15.653 16.211 hybrid contribution -0.264 -0.396 -2.095 2.149 sum -4.414 0.342 13.558 14.263 Atomic orbital electron populations 1.21668 0.96785 0.98818 1.00569 1.18375 0.93512 0.92949 0.90242 1.21689 0.97854 0.97937 1.00496 1.21238 1.31848 1.12246 0.91595 0.93777 1.25425 0.95114 0.95569 1.00895 1.69888 1.36881 1.23176 1.23686 0.85847 0.78579 0.78874 0.79687 1.20217 1.20825 1.20408 1.21329 0.97059 0.95307 0.84035 1.46236 1.52153 1.31527 1.05245 1.21496 0.80983 0.85209 0.85783 1.90683 1.38938 1.27578 1.87174 1.21571 0.88347 0.94657 0.90106 0.84279 1.92844 1.60998 1.78742 1.85217 1.24952 1.01101 0.97144 0.96244 1.23711 1.02108 0.94306 0.89208 1.65035 1.27317 1.05154 1.32448 1.23369 0.97999 0.99410 0.88555 0.94089 0.91969 0.96126 0.96519 0.91846 0.94316 0.93002 0.94408 0.93737 0.75061 0.85460 0.88453 0.87507 0.83717 0.91211 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.08 71.98 0.58 -4.48 16 2 C 0.05 2.22 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 4 C -0.53 -27.48 8.01 25.60 0.21 -27.28 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.55 5.15 84.66 0.44 1.99 16 7 N -0.90 -46.91 9.35 21.45 0.20 -46.71 16 8 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.15 5.95 4.50 86.38 0.39 6.33 16 13 N -0.70 -22.26 4.96 -463.05 -2.30 -24.56 16 14 C 0.48 14.92 7.17 87.66 0.63 15.55 16 15 O -0.56 -21.91 15.26 -3.03 -0.05 -21.95 16 16 C 0.09 2.04 3.90 29.85 0.12 2.15 16 17 H 0.14 1.96 7.99 -2.39 -0.02 1.94 16 18 F -0.20 -5.12 15.47 44.97 0.70 -4.43 16 19 C -0.17 -3.29 3.85 -10.15 -0.04 -3.33 16 20 C 0.04 0.57 8.35 86.41 0.72 1.29 16 21 N -0.67 -13.13 8.55 -524.18 -4.48 -17.61 16 22 C 0.04 0.88 6.72 86.41 0.58 1.46 16 23 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 24 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 28 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 29 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.41 10.99 6.05 -92.70 -0.56 10.43 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 1.72 7.27 -2.39 -0.02 1.70 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.35 5.26 8.89 -89.69 -0.80 4.46 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.29 7.71 -2.39 -0.02 2.27 16 Total: -1.00 -60.79 305.59 -0.01 -60.80 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.28 Total: 19.28 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.17 Total: -8.80 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -6.58 Total: -88.88 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.70 Total: -4.43 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.79 -0.01 -60.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316256847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.056 kcal (2) G-P(sol) polarization free energy of solvation -60.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds