Wall clock time and date at job start Mon Mar 30 2020 04:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00451 * 2 1 4 4 C 1.53000 * 109.47301 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.51164 * 60.08134 * 4 3 2 6 6 C 1.53100 * 109.50706 * 180.21905 * 4 3 2 7 7 N 1.47017 * 109.25802 * 176.77976 * 6 4 3 8 8 C 1.46896 * 110.99756 * 177.60479 * 7 6 4 9 9 C 1.53002 * 109.47035 * 189.68343 * 8 7 6 10 10 O 1.42905 * 109.47079 * 64.99813 * 9 8 7 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47163 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00281 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99721 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46881 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46827 * 119.99902 * 16 14 12 19 19 H 1.48498 * 109.47252 * 240.00324 * 16 14 12 20 20 C 1.47012 * 110.75124 * 301.38332 * 7 6 4 21 21 C 1.53091 * 109.26070 * 58.61787 * 20 7 6 22 22 O 1.43015 * 109.26034 * 303.15011 * 21 20 7 23 23 H 1.09006 * 109.47213 * 59.99569 * 1 2 3 24 24 H 1.08996 * 109.47570 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46893 * 300.00270 * 1 2 3 26 26 H 1.00906 * 111.00107 * 236.04428 * 2 1 3 27 27 H 1.08999 * 109.47067 * 59.99991 * 3 2 1 28 28 H 1.09002 * 109.47217 * 299.99776 * 3 2 1 29 29 H 1.08994 * 109.50600 * 56.84370 * 6 4 3 30 30 H 1.09000 * 109.50098 * 296.71508 * 6 4 3 31 31 H 1.08997 * 109.47137 * 69.68522 * 8 7 6 32 32 H 1.09005 * 109.47283 * 309.68052 * 8 7 6 33 33 H 1.09004 * 109.46930 * 305.00039 * 9 8 7 34 34 H 1.09000 * 109.47312 * 184.99983 * 9 8 7 35 35 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 36 36 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 37 37 H 0.97007 * 119.99648 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.50155 * 178.54665 * 20 7 6 39 39 H 1.08992 * 109.50415 * 298.63185 * 20 7 6 40 40 H 1.09006 * 109.50899 * 63.08361 * 21 20 7 41 41 H 1.08997 * 109.51091 * 183.21345 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8748 0.8086 -0.8914 6 6 4.0746 2.7594 0.0049 7 7 5.5420 2.7142 0.0822 8 6 6.1136 4.0665 0.0327 9 6 7.6323 3.9727 -0.1279 10 8 7.9421 3.3847 -1.3930 11 6 9.3424 3.2500 -1.6440 12 6 9.5520 2.6230 -2.9982 13 1 8.7009 2.3545 -3.6066 14 6 10.8301 2.3929 -3.4611 15 7 11.8665 2.7202 -2.7205 16 14 11.0899 1.6149 -5.1395 17 1 9.7723 1.3425 -5.7680 18 1 11.8661 2.5431 -6.0004 19 1 11.8377 0.3414 -4.9844 20 6 5.9782 2.0017 1.2919 21 6 5.4095 0.5804 1.2735 22 8 3.9848 0.6437 1.1666 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8306 -0.5262 -0.7814 27 1 1.6460 1.8947 0.8900 28 1 1.6461 1.8948 -0.8900 29 1 3.6810 3.2974 0.8673 30 1 3.7738 3.2685 -0.9108 31 1 5.8779 4.5946 0.9566 32 1 5.6916 4.6086 -0.8136 33 1 8.0446 3.3554 0.6703 34 1 8.0656 4.9714 -0.0756 35 1 9.8116 4.2336 -1.6230 36 1 9.7898 2.6176 -0.8773 37 1 12.7658 2.5586 -3.0464 38 1 7.0670 1.9577 1.3156 39 1 5.6158 2.5281 2.1748 40 1 5.8148 0.0372 0.4198 41 1 5.6829 0.0671 2.1953 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385180308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:20 Heat of formation + Delta-G solvation = -109.447450 kcal Electronic energy + Delta-G solvation = -19770.714005 eV Core-core repulsion = 16684.753079 eV Total energy + Delta-G solvation = -3085.960926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75905 -38.69627 -37.12545 -36.36472 -34.86788 -32.71596 -31.28356 -29.31228 -28.48008 -26.28904 -24.79714 -24.48397 -23.70573 -22.19038 -21.32013 -18.62380 -17.88976 -17.57430 -17.31177 -16.76218 -16.43078 -16.29708 -15.90967 -15.70712 -15.65877 -15.13130 -14.69831 -14.66274 -14.40003 -13.70059 -13.61534 -13.23309 -13.04163 -12.92568 -12.75347 -12.67527 -12.56461 -12.46561 -12.20035 -12.11844 -11.74819 -11.38500 -11.21777 -10.85848 -10.55549 -10.18237 -9.36359 -9.26836 -8.31840 -6.43622 1.39863 1.41367 1.56216 2.35267 2.66860 2.83233 3.01914 3.19219 3.34082 3.92654 3.95584 3.98015 4.09971 4.16379 4.24424 4.28348 4.43478 4.46797 4.53823 4.59411 4.60987 4.65151 4.67126 4.69444 4.81484 4.83732 4.95151 4.97777 5.04645 5.05316 5.19117 5.55995 5.95831 5.98275 6.00700 6.04727 6.27005 6.44249 6.56972 6.86290 7.28709 8.80776 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.003982 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.698612 B = 7030.757591 C = 7602.245067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.704 5.704 3 C 0.075 3.925 4 C 0.096 3.904 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.550 5.550 8 C 0.071 3.929 9 C 0.056 3.944 10 O -0.395 6.395 11 C 0.210 3.790 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.019 3.981 21 C 0.066 3.934 22 O -0.377 6.377 23 H 0.029 0.971 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.344 0.656 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.049 0.951 35 H -0.016 1.016 36 H -0.018 1.018 37 H 0.270 0.730 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.808 -1.447 7.521 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.335 5.335 3 C -0.055 4.055 4 C 0.037 3.963 5 H 0.070 0.930 6 C -0.098 4.098 7 N -0.275 5.275 8 C -0.057 4.057 9 C -0.021 4.021 10 O -0.315 6.315 11 C 0.134 3.866 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.109 4.109 21 C -0.011 4.011 22 O -0.295 6.295 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.002 0.998 36 H 0.000 1.000 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.685 -1.907 7.817 21.266 hybrid contribution 0.703 0.716 -0.803 1.285 sum -18.982 -1.191 7.014 20.271 Atomic orbital electron populations 1.22223 0.86500 1.02598 1.00673 1.60266 1.08744 1.13802 1.50678 1.21908 0.91011 0.90638 1.01926 1.22188 0.94439 0.91183 0.88453 0.93022 1.22725 0.87048 0.97533 1.02464 1.62012 1.08685 1.17786 1.39060 1.22071 0.92480 0.89282 1.01836 1.22606 0.96190 0.96641 0.86655 1.87899 1.25394 1.82512 1.35664 1.19784 0.77721 0.93608 0.95447 1.21402 0.92965 1.41388 1.02429 0.92229 1.25962 0.94861 0.95835 1.02629 1.70079 0.99064 1.48442 1.39512 0.85140 0.78508 0.78149 0.77628 1.18903 1.19571 1.19650 1.22807 1.01064 0.96084 0.90955 1.22661 0.80842 0.94978 1.02659 1.88040 1.20847 1.76918 1.43736 0.95264 0.90629 0.91709 0.83796 0.90255 0.92108 0.93140 0.89016 0.91154 0.89815 0.94316 0.93315 0.99839 1.00030 0.92075 0.90655 0.93144 0.93813 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.78 16 2 N -0.70 -13.37 6.72 -537.15 -3.61 -16.98 16 3 C 0.07 1.40 5.38 86.30 0.46 1.86 16 4 C 0.10 2.29 3.01 30.63 0.09 2.38 16 5 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 6 C 0.03 0.73 4.93 86.31 0.43 1.15 16 7 N -0.55 -16.45 4.68 -895.24 -4.19 -20.64 16 8 C 0.07 2.06 5.34 86.30 0.46 2.52 16 9 C 0.06 2.11 6.00 71.98 0.43 2.54 16 10 O -0.40 -19.76 10.27 -148.98 -1.53 -21.29 16 11 C 0.21 12.04 5.69 71.24 0.41 12.44 16 12 C -0.54 -33.11 9.43 25.60 0.24 -32.87 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.01 0.31 5.46 84.65 0.46 0.77 16 15 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 16 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C 0.02 0.52 5.44 86.31 0.47 0.99 16 21 C 0.07 1.73 7.01 72.01 0.50 2.23 16 22 O -0.38 -10.19 10.33 -148.98 -1.54 -11.73 16 23 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.34 6.19 8.82 -89.69 -0.79 5.40 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 31 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 32 H 0.08 2.40 8.04 -2.38 -0.02 2.38 16 33 H 0.04 1.43 6.29 -2.38 -0.02 1.41 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 37 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 38 H 0.08 2.27 6.28 -2.39 -0.01 2.26 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -69.95 332.15 -3.04 -72.99 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.20 Total: 11.19 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.32 Total: -4.20 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -7.51 Total: -93.99 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -3.07 Total: -33.02 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.95 -3.04 -72.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385180308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.461 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds