Wall clock time and date at job start Mon Mar 30 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53092 * 109.48839 * 120.02943 * 2 1 3 5 5 C 1.53180 * 109.16230 * 62.38200 * 4 2 1 6 6 O 1.42899 * 109.61483 * 176.89117 * 5 4 2 7 7 C 1.42905 * 114.00392 * 90.39747 * 6 5 4 8 8 C 1.52997 * 109.47348 * 180.02562 * 7 6 5 9 9 O 1.42901 * 109.47070 * 64.99648 * 8 7 6 10 10 C 1.42905 * 113.99626 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46937 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00268 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00322 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99679 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47112 * 89.99954 * 15 13 11 17 17 H 1.48499 * 109.47458 * 209.99690 * 15 13 11 18 18 H 1.48494 * 109.47328 * 329.99919 * 15 13 11 19 19 C 1.53176 * 109.03765 * 56.97562 * 5 4 2 20 20 C 1.53086 * 109.16508 * 303.01914 * 19 5 4 21 21 H 1.08998 * 109.47969 * 297.62636 * 20 19 5 22 22 C 1.52996 * 109.49004 * 177.59751 * 20 19 5 23 23 O 1.42900 * 109.41513 * 57.61096 * 20 19 5 24 24 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 27 27 H 1.09004 * 109.51838 * 182.28278 * 4 2 1 28 28 H 1.08994 * 109.52346 * 302.47363 * 4 2 1 29 29 H 1.09005 * 109.53996 * 297.10627 * 5 4 2 30 30 H 1.09000 * 109.46734 * 299.99938 * 7 6 5 31 31 H 1.08995 * 109.46883 * 59.99864 * 7 6 5 32 32 H 1.08999 * 109.46978 * 185.00199 * 8 7 6 33 33 H 1.09006 * 109.46984 * 304.99748 * 8 7 6 34 34 H 1.08997 * 109.47171 * 299.99720 * 10 9 8 35 35 H 1.08997 * 109.47199 * 60.00270 * 10 9 8 36 36 H 0.97003 * 120.00129 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.51886 * 183.11059 * 19 5 4 38 38 H 1.09005 * 109.51985 * 62.93119 * 19 5 4 39 39 H 1.09004 * 109.47374 * 300.05275 * 22 20 19 40 40 H 1.09004 * 109.47210 * 60.05008 * 22 20 19 41 41 H 1.09000 * 109.47228 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7222 1.2495 5 6 1.5762 -2.1814 1.2120 6 8 2.1081 -2.8832 2.3374 7 6 1.2640 -2.8579 3.4903 8 6 1.9301 -3.6353 4.6273 9 8 3.1298 -2.9669 5.0223 10 6 3.8334 -3.6148 6.0841 11 6 5.0746 -2.8280 6.4177 12 1 5.3031 -1.9234 5.8737 13 6 5.9180 -3.2623 7.4182 14 7 7.0010 -2.5754 7.7097 15 14 5.5225 -4.8264 8.3597 16 1 6.1433 -5.9878 7.6732 17 1 6.0595 -4.7225 9.7403 18 1 4.0503 -5.0126 8.4140 19 6 2.0769 -2.8321 -0.0811 20 6 1.5647 -2.0284 -1.2792 21 1 0.4751 -2.0551 -1.2958 22 6 2.1097 -2.6370 -2.5727 23 8 2.0065 -0.6741 -1.1665 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.1301 -0.6872 1.2707 28 1 1.6424 -0.2359 2.1398 29 1 0.4872 -2.2181 1.2408 30 1 1.1045 -1.8254 3.8011 31 1 0.3053 -3.3169 3.2487 32 1 1.2491 -3.6918 5.4765 33 1 2.1706 -4.6424 4.2868 34 1 3.1921 -3.6712 6.9637 35 1 4.1134 -4.6213 5.7734 36 1 7.5946 -2.8811 8.4134 37 1 1.7042 -3.8547 -0.1423 38 1 3.1669 -2.8398 -0.0867 39 1 3.1993 -2.6106 -2.5558 40 1 1.7727 -3.6700 -2.6585 41 1 1.7453 -2.0642 -3.4255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:28 Heat of formation + Delta-G solvation = -152.210199 kcal Electronic energy + Delta-G solvation = -19852.590212 eV Core-core repulsion = 16732.482203 eV Total energy + Delta-G solvation = -3120.108009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20012 -37.82080 -36.47982 -33.56133 -32.91586 -32.49181 -30.04659 -28.83756 -27.34752 -26.82645 -23.10848 -22.55246 -21.96861 -21.73424 -19.52079 -17.08135 -16.86835 -16.55854 -16.09337 -15.81818 -15.15392 -14.78253 -14.66290 -14.30134 -14.20489 -13.76322 -13.29558 -13.00721 -12.81002 -12.56578 -12.24479 -12.22135 -12.10962 -11.87390 -11.72499 -11.38198 -11.20388 -10.96152 -10.87237 -10.79460 -10.45981 -10.24367 -9.85779 -9.65770 -9.34963 -9.15399 -8.84114 -8.45474 -6.09306 -4.08149 3.26180 3.32689 3.34005 3.53588 3.71093 4.37164 4.54925 4.57445 4.66920 4.73405 4.87577 4.93598 5.02905 5.09288 5.12322 5.21853 5.30458 5.31058 5.35398 5.48176 5.52977 5.63753 5.64870 5.76700 5.81555 5.83350 5.89592 5.95143 6.02923 6.07279 6.14626 6.24817 6.60935 7.01322 7.11338 7.39201 7.61495 8.03430 8.68828 9.02733 9.49892 11.03836 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.003697 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.435706 B = 7572.244887 C = 7618.365491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.089 3.911 6 O -0.364 6.364 7 C 0.068 3.932 8 C 0.059 3.941 9 O -0.373 6.373 10 C 0.168 3.832 11 C -0.518 4.518 12 H 0.082 0.918 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.148 4.148 20 C 0.087 3.913 21 H 0.060 0.940 22 C -0.144 4.144 23 O -0.374 6.374 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.002 0.998 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.196 0.459 -17.148 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.033 3.967 3 H 0.123 0.877 4 C -0.211 4.211 5 C 0.031 3.969 6 O -0.283 6.283 7 C -0.009 4.009 8 C -0.018 4.018 9 O -0.292 6.292 10 C 0.093 3.907 11 C -0.556 4.556 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.186 4.186 20 C 0.029 3.971 21 H 0.078 0.922 22 C -0.201 4.201 23 O -0.293 6.293 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.662 0.624 -17.241 23.301 hybrid contribution -0.615 -1.058 1.088 1.638 sum -16.277 -0.434 -16.154 22.936 Atomic orbital electron populations 1.22493 0.96632 1.02589 1.02830 1.22152 0.93184 0.96600 0.84775 0.87713 1.22722 1.03729 0.96258 0.98382 1.22064 0.96653 0.91274 0.86944 1.88085 1.45683 1.74102 1.20458 1.22584 0.92236 1.00264 0.85801 1.22335 0.89249 0.95831 0.94414 1.87981 1.35227 1.50662 1.55330 1.20610 0.92283 0.93139 0.84686 1.20897 1.04383 1.11410 1.18885 0.89948 1.24767 0.94670 0.97050 0.96494 1.69879 1.12916 1.39184 1.31458 0.86843 0.79154 0.83998 0.79695 1.19900 1.20783 1.19149 1.22333 1.03547 0.99776 0.92905 1.22052 0.97864 0.82246 0.94905 0.92247 1.21756 1.02432 1.00236 0.95706 1.87983 1.73826 1.24394 1.43147 0.92079 0.91303 0.91771 0.89641 0.90511 0.92469 0.92682 0.92822 0.92903 0.93536 0.98033 0.98326 0.92382 0.90476 0.89811 0.91539 0.91084 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.65 37.16 0.32 -1.27 16 2 C 0.09 0.96 3.91 -26.68 -0.10 0.85 16 3 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.17 -2.19 5.27 -26.59 -0.14 -2.33 16 5 C 0.09 1.14 2.39 -26.55 -0.06 1.08 16 6 O -0.36 -6.10 9.96 -40.08 -0.40 -6.50 16 7 C 0.07 1.02 6.14 37.16 0.23 1.25 16 8 C 0.06 1.08 6.32 37.16 0.23 1.31 16 9 O -0.37 -9.11 10.29 -40.08 -0.41 -9.53 16 10 C 0.17 4.41 4.76 36.01 0.17 4.58 16 11 C -0.52 -15.84 9.99 -34.44 -0.34 -16.19 16 12 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 13 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 14 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 15 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.15 -1.72 5.07 -26.60 -0.13 -1.85 16 20 C 0.09 0.88 2.94 -26.69 -0.08 0.80 16 21 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 22 C -0.14 -1.21 9.56 37.16 0.36 -0.86 16 23 O -0.37 -4.45 10.24 -35.23 -0.36 -4.81 16 24 H 0.06 0.50 4.98 -51.93 -0.26 0.25 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.95 8.00 -51.93 -0.42 0.53 16 29 H 0.06 0.62 6.26 -51.93 -0.33 0.30 16 30 H 0.05 0.82 8.00 -51.93 -0.42 0.40 16 31 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 35 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 36 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -33.71 325.50 -6.98 -40.69 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.17 Total: -3.92 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.35 Total: -10.56 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.77 Total: -27.33 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -1.17 Total: -20.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.71 -6.98 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.517 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds