Wall clock time and date at job start Mon Mar 30 2020 04:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 O 1.42906 * 109.47321 * 180.02562 * 8 7 6 11 11 C 1.42889 * 114.00077 * 270.00343 * 10 8 7 12 12 C 1.52998 * 109.47247 * 179.97438 * 11 10 8 13 13 O 1.42907 * 109.47073 * 65.00303 * 12 11 10 14 14 C 1.42895 * 114.00226 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47380 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00319 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99730 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46807 * 120.00609 * 19 17 15 22 22 H 1.48501 * 109.47091 * 239.99845 * 19 17 15 23 23 C 1.52999 * 109.47162 * 210.00222 * 3 2 1 24 24 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 25 25 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 28 28 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 33 33 H 1.09000 * 109.47013 * 299.99641 * 11 10 8 34 34 H 1.09008 * 109.47391 * 59.99318 * 11 10 8 35 35 H 1.09000 * 109.47291 * 184.99728 * 12 11 10 36 36 H 1.09000 * 109.47279 * 304.99918 * 12 11 10 37 37 H 1.09000 * 109.46937 * 299.99948 * 14 13 12 38 38 H 1.08995 * 109.47171 * 59.99418 * 14 13 12 39 39 H 0.96997 * 119.99506 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47486 * 59.99398 * 23 3 2 41 41 H 1.09002 * 109.46716 * 299.99480 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 2.8395 3.1694 1.4423 7 6 4.1881 3.1277 0.7210 8 6 3.9807 2.6617 -0.7215 9 1 3.3152 3.3553 -1.2353 10 8 5.2404 2.6221 -1.3951 11 6 5.5901 3.8452 -2.0460 12 6 6.9498 3.6885 -2.7296 13 8 6.8486 2.7195 -3.7750 14 6 8.0708 2.4961 -4.4809 15 6 7.8493 1.4614 -5.5539 16 1 6.8729 1.0184 -5.6836 17 6 8.8931 1.0803 -6.3701 18 7 10.0822 1.6194 -6.2119 19 14 8.6187 -0.2027 -7.6997 20 1 7.2031 -0.6507 -7.6708 21 1 8.9236 0.3877 -9.0278 22 1 9.5112 -1.3647 -7.4580 23 6 3.3589 1.2632 -0.7213 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.8829 1.0775 1.9563 28 1 1.2568 1.8015 1.9562 29 1 2.1740 3.8630 0.9286 30 1 2.9876 3.5011 2.4700 31 1 4.6313 4.1234 0.7212 32 1 4.8537 2.4339 1.2347 33 1 4.8338 4.0887 -2.7922 34 1 5.6445 4.6464 -1.3089 35 1 7.2576 4.6458 -3.1502 36 1 7.6881 3.3586 -1.9987 37 1 8.4022 3.4286 -4.9377 38 1 8.8320 2.1413 -3.7861 39 1 10.8165 1.3516 -6.7864 40 1 3.2112 0.9312 -1.7489 41 1 4.0242 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385341859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:26 Heat of formation + Delta-G solvation = -162.020003 kcal Electronic energy + Delta-G solvation = -19490.585685 eV Core-core repulsion = 16370.052290 eV Total energy + Delta-G solvation = -3120.533394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65126 -37.91772 -36.58289 -35.37409 -32.69013 -30.80498 -30.03320 -28.67926 -26.76360 -26.60993 -22.71695 -22.47609 -22.21585 -21.72921 -20.12895 -17.25822 -16.45457 -16.21483 -15.88643 -15.60201 -15.32845 -14.91575 -14.80420 -14.26294 -14.20270 -13.94959 -13.56157 -13.24882 -12.70355 -12.62988 -12.32565 -11.98530 -11.76300 -11.40167 -11.23256 -11.12976 -10.99659 -10.85671 -10.75009 -10.71071 -10.53311 -10.41380 -9.96361 -9.70196 -9.30626 -9.03139 -8.78871 -8.12375 -6.06551 -4.07563 3.32914 3.34459 3.39078 3.46428 3.97758 4.39121 4.51124 4.66610 4.75637 4.88123 4.91249 4.99803 5.08978 5.12977 5.17013 5.23037 5.29002 5.30051 5.38316 5.44289 5.48469 5.62230 5.69546 5.77599 5.82726 5.95256 6.00578 6.04977 6.10250 6.18038 6.26079 6.29617 7.02163 7.14222 7.46842 7.49778 7.85085 8.20334 8.63229 9.06550 9.57131 11.05244 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.003746 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.989040 B = 7472.127181 C = 8466.665807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.145 4.145 8 C 0.094 3.906 9 H 0.058 0.942 10 O -0.364 6.364 11 C 0.068 3.932 12 C 0.063 3.937 13 O -0.389 6.389 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.115 4.115 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 4.065 15.768 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.036 3.964 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.183 4.183 8 C 0.036 3.964 9 H 0.076 0.924 10 O -0.283 6.283 11 C -0.008 4.008 12 C -0.014 4.014 13 O -0.308 6.308 14 C 0.119 3.881 15 C -0.550 4.550 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.153 4.153 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.095 3.627 15.638 23.450 hybrid contribution -0.048 0.034 -0.596 0.599 sum -17.143 3.662 15.042 23.098 Atomic orbital electron populations 1.22781 0.81304 1.02692 0.99789 1.87937 1.19412 1.27747 1.95022 1.22049 0.94711 0.84404 0.95224 0.92180 1.22070 1.01315 0.97357 0.97245 1.21422 0.96478 0.96432 1.00768 1.22110 0.97606 1.02114 0.96430 1.21899 0.86302 0.96369 0.91864 0.92423 1.88075 1.35840 1.34908 1.69442 1.22614 0.97311 0.86312 0.94572 1.22256 0.94757 0.93360 0.91057 1.87917 1.36891 1.59032 1.47001 1.20210 0.81280 0.95831 0.90730 1.21112 0.97014 1.21993 1.14880 0.91461 1.24954 0.94777 0.97007 0.97852 1.69978 1.01039 1.43351 1.39578 0.86280 0.78484 0.80854 0.80884 1.19448 1.20889 1.20825 1.21589 0.94644 0.96955 1.02093 0.94018 0.89677 0.94262 0.90773 0.91916 0.91948 0.91317 0.91604 0.90749 0.92804 0.92928 0.93061 0.93663 0.97803 0.97647 0.92762 0.90196 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.52 10.35 -35.23 -0.36 -4.88 16 3 C 0.09 1.00 2.61 -26.73 -0.07 0.93 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.14 -1.28 5.54 -26.73 -0.15 -1.43 16 6 C -0.11 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.14 -1.52 5.54 -26.73 -0.15 -1.67 16 8 C 0.09 1.21 2.61 -26.71 -0.07 1.14 16 9 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 10 O -0.36 -6.25 9.95 -40.08 -0.40 -6.65 16 11 C 0.07 1.08 6.13 37.16 0.23 1.31 16 12 C 0.06 1.23 6.32 37.16 0.23 1.47 16 13 O -0.39 -9.93 10.29 -40.08 -0.41 -10.34 16 14 C 0.19 5.52 5.69 36.00 0.20 5.73 16 15 C -0.51 -15.60 9.43 -34.44 -0.32 -15.92 16 16 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 19 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 C -0.12 -1.51 5.23 -26.71 -0.14 -1.65 16 24 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.05 0.65 7.87 -51.92 -0.41 0.24 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -33.46 334.94 -7.29 -40.75 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -7.48 Total: -6.20 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.61 Total: -8.31 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.18 Total: -21.87 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.46 -7.29 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.272 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds