Wall clock time and date at job start Mon Mar 30 2020 04:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99905 * 3 2 1 5 5 C 1.52999 * 109.47616 * 270.00173 * 3 2 1 6 6 C 1.52997 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47086 * 300.00656 * 8 7 6 11 11 C 1.42900 * 113.99523 * 269.99562 * 10 8 7 12 12 C 1.52999 * 109.46928 * 179.97438 * 11 10 8 13 13 O 1.42906 * 109.47172 * 65.00197 * 12 11 10 14 14 C 1.42898 * 114.00266 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46870 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00185 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47325 * 59.99587 * 19 17 15 21 21 H 1.48499 * 109.47293 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46730 * 300.00081 * 19 17 15 23 23 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 24 24 H 1.08998 * 109.47707 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.47119 * 59.99619 * 1 2 3 26 26 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46929 * 59.99102 * 5 3 2 28 28 H 1.09002 * 109.46716 * 299.99907 * 5 3 2 29 29 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 32 32 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47302 * 300.00129 * 11 10 8 34 34 H 1.08995 * 109.47077 * 60.00251 * 11 10 8 35 35 H 1.09002 * 109.47461 * 184.99551 * 12 11 10 36 36 H 1.08999 * 109.47472 * 305.00661 * 12 11 10 37 37 H 1.09003 * 109.47000 * 299.99844 * 14 13 12 38 38 H 1.08995 * 109.47161 * 60.00359 * 14 13 12 39 39 H 0.97006 * 119.99936 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47153 * 60.00231 * 23 8 7 41 41 H 1.09001 * 109.47289 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4424 6 6 2.8394 3.1694 -1.4424 7 6 4.1880 3.1278 -0.7209 8 6 3.9805 2.6618 0.7216 9 1 4.9411 2.6326 1.2357 10 8 3.1078 3.5712 1.3951 11 6 3.7824 4.6498 2.0460 12 6 2.7557 5.5552 2.7293 13 8 2.1034 4.8314 3.7747 14 6 1.1191 5.5899 4.4804 15 6 0.4986 4.7328 5.5533 16 1 0.8230 3.7109 5.6831 17 6 -0.4842 5.2529 6.3687 18 7 -0.8796 6.4972 6.2103 19 14 -1.2530 4.1908 7.6991 20 1 -0.2000 3.7445 8.6464 21 1 -2.2759 4.9790 8.4324 22 1 -1.8938 3.0046 7.0767 23 6 3.3588 1.2639 0.7215 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.2569 1.8014 -1.9563 28 1 2.8829 1.0776 -1.9563 29 1 2.1737 3.8631 -0.9287 30 1 2.9875 3.5012 -2.4700 31 1 4.8535 2.4342 -1.2346 32 1 4.6307 4.1239 -0.7205 33 1 4.4695 4.2510 2.7923 34 1 4.3412 5.2264 1.3089 35 1 3.2609 6.4246 3.1500 36 1 2.0165 5.8827 1.9983 37 1 1.5901 6.4604 4.9372 38 1 0.3461 5.9178 3.7855 39 1 -1.5707 6.8633 6.7842 40 1 4.0244 0.5702 0.2078 41 1 3.2106 0.9321 1.7492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385341861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:29 Heat of formation + Delta-G solvation = -161.590464 kcal Electronic energy + Delta-G solvation = -20013.436686 eV Core-core repulsion = 16892.921917 eV Total energy + Delta-G solvation = -3120.514768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61889 -37.71186 -36.55273 -35.01528 -32.70099 -30.74188 -29.87454 -28.85101 -26.76485 -26.36777 -22.65060 -22.38712 -22.17641 -21.87868 -19.73386 -16.87646 -16.36813 -16.35450 -15.93182 -15.61089 -15.06307 -14.88265 -14.63675 -14.31777 -14.08975 -13.93574 -13.18963 -13.02369 -12.68185 -12.45800 -12.28849 -11.86495 -11.75564 -11.52128 -11.28180 -10.99970 -10.88467 -10.78603 -10.77096 -10.63936 -10.44032 -10.20787 -9.96690 -9.47442 -9.24706 -9.07795 -8.80241 -8.14526 -6.08531 -4.09874 3.34156 3.36404 3.40789 3.76972 3.84858 4.36751 4.66138 4.73414 4.88162 4.95069 5.11530 5.16132 5.27837 5.31688 5.34997 5.40765 5.47403 5.49063 5.56345 5.61203 5.62103 5.69484 5.73262 5.89097 5.98085 6.01384 6.03680 6.11836 6.13541 6.24917 6.28796 6.37440 7.11684 7.28411 7.44600 7.48292 7.82170 8.18004 8.61017 9.03507 9.54767 11.03053 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.004779 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.813277 B = 5857.325261 C = 6809.364567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.090 3.910 4 H 0.076 0.924 5 C -0.137 4.137 6 C -0.112 4.112 7 C -0.142 4.142 8 C 0.090 3.910 9 H 0.064 0.936 10 O -0.363 6.363 11 C 0.068 3.932 12 C 0.064 3.936 13 O -0.388 6.388 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.109 4.109 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.004 0.996 38 H 0.005 0.995 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 -7.430 -15.564 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C 0.033 3.967 4 H 0.094 0.906 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.180 4.180 8 C 0.031 3.969 9 H 0.082 0.918 10 O -0.283 6.283 11 C -0.009 4.009 12 C -0.014 4.014 13 O -0.308 6.308 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.583 -7.671 -15.433 19.253 hybrid contribution -0.471 0.216 0.590 0.785 sum 8.112 -7.455 -14.843 18.485 Atomic orbital electron populations 1.22766 0.81199 1.02294 1.00288 1.87833 1.19638 1.28408 1.95125 1.22078 0.95296 0.84384 0.94953 0.90590 1.21999 1.01030 0.97073 0.97357 1.21375 0.96799 0.96930 0.99879 1.22063 0.97945 1.01639 0.96322 1.22007 0.93418 0.89432 0.92000 0.91839 1.88069 1.32916 1.37895 1.69372 1.22600 0.94976 0.88718 0.94579 1.22250 0.94797 0.93324 0.91008 1.87917 1.55694 1.40170 1.47020 1.20194 0.85409 0.91663 0.90693 1.21023 1.19860 0.99185 1.15082 0.91607 1.24943 0.96454 0.95292 0.97789 1.69958 1.30442 1.13861 1.39654 0.86399 0.78823 0.80053 0.81229 1.20014 1.21158 1.20002 1.21636 0.95914 0.95232 1.01911 0.93485 0.94370 0.90013 0.92103 0.91658 0.90818 0.92137 0.91246 0.91733 0.92803 0.92987 0.93145 0.93796 0.97826 0.97724 0.92641 0.90413 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.46 16 2 O -0.39 -5.49 10.35 -35.23 -0.36 -5.86 16 3 C 0.09 1.22 2.46 -26.73 -0.07 1.16 16 4 H 0.08 1.20 7.32 -51.93 -0.38 0.82 16 5 C -0.14 -1.55 5.54 -26.73 -0.15 -1.70 16 6 C -0.11 -1.22 5.78 -26.73 -0.15 -1.37 16 7 C -0.14 -1.46 5.63 -26.73 -0.15 -1.61 16 8 C 0.09 1.12 2.92 -26.73 -0.08 1.04 16 9 H 0.06 0.71 7.78 -51.93 -0.40 0.31 16 10 O -0.36 -5.90 8.60 -40.08 -0.34 -6.24 16 11 C 0.07 1.04 6.13 37.16 0.23 1.27 16 12 C 0.06 1.21 6.32 37.16 0.23 1.45 16 13 O -0.39 -9.72 10.29 -40.08 -0.41 -10.13 16 14 C 0.19 5.47 5.69 36.00 0.20 5.68 16 15 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 19 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.40 5.31 -26.73 -0.14 -1.55 16 24 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.04 0.40 7.87 -51.93 -0.41 -0.01 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -32.55 332.86 -7.22 -39.77 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -7.43 Total: -4.78 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.60 Total: -8.40 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.12 Total: -22.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.55 -7.22 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.824 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds