Wall clock time and date at job start Mon Mar 30 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47015 * 111.00120 * 2 1 4 4 C 1.53094 * 109.25934 * 182.39188 * 3 2 1 5 5 O 1.43015 * 109.25957 * 303.15101 * 4 3 2 6 6 C 1.43013 * 113.73671 * 58.66909 * 5 4 3 7 7 H 1.08997 * 109.50592 * 61.30938 * 6 5 4 8 8 C 1.53001 * 109.50204 * 181.39464 * 6 5 4 9 9 N 1.46899 * 109.47187 * 299.99984 * 8 6 5 10 10 C 1.46898 * 110.99842 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47357 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 64.99864 * 11 10 9 13 13 C 1.42899 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00389 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99589 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47413 * 119.99514 * 18 16 14 21 21 H 1.48496 * 109.46943 * 239.99569 * 18 16 14 22 22 C 1.47009 * 111.00156 * 123.63490 * 2 1 3 23 23 H 1.09002 * 109.47280 * 56.04606 * 1 2 3 24 24 H 1.08999 * 109.47064 * 176.04489 * 1 2 3 25 25 H 1.08993 * 109.47098 * 296.04891 * 1 2 3 26 26 H 1.08996 * 109.50848 * 62.45451 * 3 2 1 27 27 H 1.09006 * 109.50656 * 302.32738 * 3 2 1 28 28 H 1.09002 * 109.50415 * 183.21314 * 4 3 2 29 29 H 1.09004 * 109.54016 * 63.11150 * 4 3 2 30 30 H 1.09004 * 109.46974 * 180.02562 * 8 6 5 31 31 H 1.09003 * 109.47329 * 60.00540 * 8 6 5 32 32 H 1.00895 * 111.00226 * 56.05138 * 9 8 6 33 33 H 1.09002 * 109.47351 * 60.00282 * 10 9 8 34 34 H 1.09002 * 109.47308 * 300.00172 * 10 9 8 35 35 H 1.09002 * 109.47398 * 185.00108 * 11 10 9 36 36 H 1.09001 * 109.47194 * 305.00288 * 11 10 9 37 37 H 1.09007 * 109.47484 * 299.99646 * 13 12 11 38 38 H 1.09004 * 109.47459 * 59.99983 * 13 12 11 39 39 H 0.97000 * 119.99632 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.51102 * 57.67164 * 22 2 1 41 41 H 1.09010 * 109.50781 * 297.53916 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5249 -0.7849 1.0709 7 1 3.8391 -1.3085 0.1681 8 6 4.0826 -1.5057 2.2999 9 7 5.5499 -1.5243 2.2328 10 6 6.1215 -2.2107 3.3990 11 6 7.6479 -2.2105 3.2935 12 8 8.1305 -0.8677 3.3710 13 6 9.5522 -0.7550 3.2814 14 6 9.9480 0.6961 3.3745 15 1 9.1895 1.4563 3.4901 16 6 11.2782 1.0534 3.3111 17 7 12.2016 0.1277 3.1698 18 14 11.7687 2.8521 3.4273 19 1 10.5513 3.6882 3.5821 20 1 12.6569 3.0482 4.6011 21 1 12.4879 3.2498 2.1905 22 6 1.9959 -0.7602 1.1427 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 -0.3633 0.4513 0.9232 26 1 1.6828 1.8826 0.9109 27 1 1.6134 1.9092 -0.8682 28 1 3.9221 2.3399 -0.0030 29 1 3.8391 0.8648 -0.9965 30 1 3.7072 -2.5288 2.3225 31 1 3.7667 -0.9824 3.2025 32 1 5.9198 -0.5897 2.1458 33 1 5.7600 -3.2386 3.4290 34 1 5.8198 -1.6927 4.3094 35 1 8.0687 -2.7957 4.1112 36 1 7.9463 -2.6494 2.3414 37 1 10.0130 -1.3100 4.0987 38 1 9.8898 -1.1636 2.3289 39 1 13.1374 0.3791 3.1256 40 1 1.6134 -1.7803 1.1087 41 1 1.6828 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385403323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:38 Heat of formation + Delta-G solvation = -90.531991 kcal Electronic energy + Delta-G solvation = -19474.225357 eV Core-core repulsion = 16389.084666 eV Total energy + Delta-G solvation = -3085.140690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82112 -37.16836 -36.01587 -35.15056 -32.73284 -31.87145 -29.34785 -28.54572 -26.81182 -25.14000 -24.25331 -22.30379 -21.91566 -21.29076 -20.48671 -16.69088 -16.49829 -16.31139 -15.97494 -15.51721 -15.31138 -15.15535 -14.99685 -14.37279 -14.21897 -13.94005 -13.47953 -13.42690 -12.81028 -12.60731 -12.26329 -12.06778 -12.00798 -11.63542 -11.50873 -11.25691 -11.12823 -10.76974 -10.71175 -10.70815 -10.36756 -9.95568 -9.69015 -9.03956 -8.77728 -8.71498 -8.14285 -8.11529 -6.06681 -4.07828 3.32188 3.38391 3.45305 3.47991 3.70251 4.29655 4.39285 4.71384 4.73428 4.89273 4.97615 5.00276 5.02809 5.13807 5.20077 5.28768 5.29871 5.34248 5.46190 5.49635 5.52334 5.58792 5.66839 5.77601 5.84488 5.96675 6.13454 6.25894 6.40703 6.60825 6.61389 7.13088 7.16704 7.29162 7.49372 7.77793 7.84452 8.20586 8.63666 9.06192 9.56832 11.05013 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003740 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.676733 B = 7484.556283 C = 8422.793160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.065 3.935 5 O -0.375 6.375 6 C 0.095 3.905 7 H 0.076 0.924 8 C 0.069 3.931 9 N -0.684 5.684 10 C 0.065 3.935 11 C 0.062 3.938 12 O -0.398 6.398 13 C 0.197 3.803 14 C -0.512 4.512 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.024 3.976 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.365 0.635 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.263 0.737 40 H 0.086 0.914 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.521 -2.244 -5.224 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.012 4.012 5 O -0.293 6.293 6 C 0.037 3.963 7 H 0.094 0.906 8 C -0.062 4.062 9 N -0.318 5.318 10 C -0.064 4.064 11 C -0.016 4.016 12 O -0.318 6.318 13 C 0.122 3.878 14 C -0.550 4.550 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.104 4.104 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.186 0.814 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.129 -2.809 -5.904 23.075 hybrid contribution -0.119 1.567 1.251 2.009 sum -22.248 -1.242 -4.653 22.763 Atomic orbital electron populations 1.22379 0.86969 1.02398 1.00581 1.62186 1.08101 1.13831 1.42594 1.22850 0.97182 0.89591 1.01580 1.22627 0.91414 0.96762 0.90406 1.88037 1.69856 1.23364 1.48080 1.22208 0.90647 0.83805 0.99655 0.90586 1.21894 0.89951 0.99148 0.95181 1.60445 1.03893 1.26209 1.41278 1.21951 0.94333 0.98466 0.91629 1.22288 0.92596 0.87115 0.99568 1.87805 1.26079 1.23424 1.94501 1.20176 0.74649 0.97618 0.95312 1.21109 0.92189 0.91950 1.49782 0.91534 1.24955 0.96068 0.98337 0.95241 1.69979 1.00758 1.32799 1.50324 0.86288 0.78521 0.84125 0.77603 1.19489 1.20918 1.20844 1.22791 0.96375 0.99316 0.91952 0.91218 0.91155 0.95575 0.93987 0.89702 0.88248 0.92130 0.90061 0.94889 0.81406 0.90801 0.94834 0.94194 0.93556 0.97870 0.97614 0.92763 0.89594 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.61 60.06 0.58 0.76 16 2 N -0.54 -5.35 4.99 -242.60 -1.21 -6.56 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.07 0.73 7.01 37.21 0.26 0.99 16 5 O -0.37 -5.33 9.81 -35.23 -0.35 -5.68 16 6 C 0.10 1.17 3.08 -26.68 -0.08 1.09 16 7 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.07 0.87 5.42 -3.82 -0.02 0.84 16 9 N -0.68 -10.95 6.50 -113.78 -0.74 -11.69 16 10 C 0.07 1.03 6.10 -3.82 -0.02 1.01 16 11 C 0.06 1.21 6.28 37.16 0.23 1.44 16 12 O -0.40 -9.86 9.85 -35.23 -0.35 -10.21 16 13 C 0.20 5.55 5.69 36.01 0.20 5.75 16 14 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 18 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.02 0.25 4.95 -3.72 -0.02 0.23 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.37 6.82 7.68 -39.29 -0.30 6.52 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -32.43 334.33 -8.66 -41.08 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.46 Total: -0.55 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.69 Total: -1.97 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.21 Total: -44.91 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.69 Total: -15.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.43 -8.66 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385403323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.450 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds