Wall clock time and date at job start Mon Mar 30 2020 04:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47015 * 111.00120 * 2 1 4 4 C 1.53094 * 109.25934 * 182.39188 * 3 2 1 5 5 O 1.43015 * 109.25957 * 303.15101 * 4 3 2 6 6 C 1.43013 * 113.73671 * 58.66909 * 5 4 3 7 7 H 1.08997 * 109.50592 * 61.30938 * 6 5 4 8 8 C 1.53001 * 109.50204 * 181.39464 * 6 5 4 9 9 N 1.46899 * 109.47187 * 299.99984 * 8 6 5 10 10 C 1.46898 * 110.99842 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47357 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 64.99864 * 11 10 9 13 13 C 1.42899 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00389 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99589 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47413 * 119.99514 * 18 16 14 21 21 H 1.48496 * 109.46943 * 239.99569 * 18 16 14 22 22 C 1.47009 * 111.00156 * 123.63490 * 2 1 3 23 23 H 1.09002 * 109.47280 * 56.04606 * 1 2 3 24 24 H 1.08999 * 109.47064 * 176.04489 * 1 2 3 25 25 H 1.08993 * 109.47098 * 296.04891 * 1 2 3 26 26 H 1.08996 * 109.50848 * 62.45451 * 3 2 1 27 27 H 1.09006 * 109.50656 * 302.32738 * 3 2 1 28 28 H 1.09002 * 109.50415 * 183.21314 * 4 3 2 29 29 H 1.09004 * 109.54016 * 63.11150 * 4 3 2 30 30 H 1.09004 * 109.46974 * 180.02562 * 8 6 5 31 31 H 1.09003 * 109.47329 * 60.00540 * 8 6 5 32 32 H 1.00895 * 111.00226 * 56.05138 * 9 8 6 33 33 H 1.09002 * 109.47351 * 60.00282 * 10 9 8 34 34 H 1.09002 * 109.47308 * 300.00172 * 10 9 8 35 35 H 1.09002 * 109.47398 * 185.00108 * 11 10 9 36 36 H 1.09001 * 109.47194 * 305.00288 * 11 10 9 37 37 H 1.09007 * 109.47484 * 299.99646 * 13 12 11 38 38 H 1.09004 * 109.47459 * 59.99983 * 13 12 11 39 39 H 0.97000 * 119.99632 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.51102 * 57.67164 * 22 2 1 41 41 H 1.09010 * 109.50781 * 297.53916 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5249 -0.7849 1.0709 7 1 3.8391 -1.3085 0.1681 8 6 4.0826 -1.5057 2.2999 9 7 5.5499 -1.5243 2.2328 10 6 6.1215 -2.2107 3.3990 11 6 7.6479 -2.2105 3.2935 12 8 8.1305 -0.8677 3.3710 13 6 9.5522 -0.7550 3.2814 14 6 9.9480 0.6961 3.3745 15 1 9.1895 1.4563 3.4901 16 6 11.2782 1.0534 3.3111 17 7 12.2016 0.1277 3.1698 18 14 11.7687 2.8521 3.4273 19 1 10.5513 3.6882 3.5821 20 1 12.6569 3.0482 4.6011 21 1 12.4879 3.2498 2.1905 22 6 1.9959 -0.7602 1.1427 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 -0.3633 0.4513 0.9232 26 1 1.6828 1.8826 0.9109 27 1 1.6134 1.9092 -0.8682 28 1 3.9221 2.3399 -0.0030 29 1 3.8391 0.8648 -0.9965 30 1 3.7072 -2.5288 2.3225 31 1 3.7667 -0.9824 3.2025 32 1 5.9198 -0.5897 2.1458 33 1 5.7600 -3.2386 3.4290 34 1 5.8198 -1.6927 4.3094 35 1 8.0687 -2.7957 4.1112 36 1 7.9463 -2.6494 2.3414 37 1 10.0130 -1.3100 4.0987 38 1 9.8898 -1.1636 2.3289 39 1 13.1374 0.3791 3.1256 40 1 1.6134 -1.7803 1.1087 41 1 1.6828 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385403323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:37 Heat of formation + Delta-G solvation = -116.321905 kcal Electronic energy + Delta-G solvation = -19475.343691 eV Core-core repulsion = 16389.084666 eV Total energy + Delta-G solvation = -3086.259025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69823 -38.86526 -37.08775 -36.33913 -34.89606 -32.99398 -30.50973 -29.72570 -28.69915 -26.18320 -25.05881 -24.51428 -22.89681 -22.65830 -21.36021 -18.65396 -17.72344 -17.45972 -17.27543 -16.85450 -16.68593 -16.36496 -16.13424 -15.86101 -15.41245 -15.14365 -14.90529 -14.71453 -14.16908 -13.54801 -13.42245 -13.22899 -13.16438 -12.93495 -12.82099 -12.70888 -12.56359 -12.38152 -12.26688 -12.09169 -11.84025 -11.43307 -11.25792 -10.87832 -10.61292 -10.22772 -9.45505 -9.36308 -8.32311 -6.44578 1.39656 1.41503 1.56285 2.35047 2.69865 2.84120 3.01343 3.21111 3.26018 3.92013 3.92810 3.98792 4.10967 4.18345 4.22682 4.35800 4.37842 4.49361 4.56542 4.58832 4.61621 4.65542 4.68441 4.78438 4.82614 4.85079 4.94541 4.95616 4.97887 5.05356 5.18387 5.55012 5.86914 5.94007 5.95927 6.07708 6.25845 6.37669 6.53704 6.82342 7.27339 8.80415 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003740 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.676733 B = 7484.556283 C = 8422.793160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.021 3.979 4 C 0.058 3.942 5 O -0.406 6.406 6 C 0.095 3.905 7 H 0.065 0.935 8 C 0.071 3.929 9 N -0.695 5.695 10 C 0.075 3.925 11 C 0.053 3.947 12 O -0.410 6.410 13 C 0.211 3.789 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.271 1.271 22 C 0.031 3.969 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.031 0.969 32 H 0.346 0.654 33 H 0.111 0.889 34 H 0.031 0.969 35 H 0.051 0.949 36 H 0.043 0.957 37 H -0.014 1.014 38 H -0.016 1.016 39 H 0.271 0.729 40 H 0.104 0.896 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.886 -1.781 -5.301 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.107 4.107 4 C -0.018 4.018 5 O -0.325 6.325 6 C 0.037 3.963 7 H 0.083 0.917 8 C -0.059 4.059 9 N -0.327 5.327 10 C -0.054 4.054 11 C -0.024 4.024 12 O -0.330 6.330 13 C 0.136 3.864 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.097 4.097 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.049 0.951 32 H 0.164 0.836 33 H 0.129 0.871 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.528 -2.379 -5.983 24.393 hybrid contribution 0.272 1.335 1.243 1.845 sum -23.256 -1.044 -4.740 23.757 Atomic orbital electron populations 1.22442 0.85333 1.03343 1.01143 1.62211 1.09602 1.13789 1.42400 1.22805 0.95820 0.89850 1.02203 1.22782 0.92856 0.96719 0.89461 1.87995 1.70891 1.24380 1.49233 1.22226 0.92228 0.82966 0.98860 0.91714 1.22012 0.87778 1.00773 0.95319 1.60495 1.05999 1.24888 1.41339 1.21949 0.91452 1.00520 0.91522 1.22630 0.95246 0.84710 0.99827 1.87771 1.23872 1.26912 1.94487 1.19796 0.76518 0.96733 0.93339 1.21416 0.92951 0.92660 1.51455 0.92151 1.25984 0.95636 1.03770 0.93943 1.70081 1.01435 1.35389 1.50119 0.85115 0.78353 0.77467 0.78330 1.18911 1.19540 1.19571 1.22709 0.94602 1.00445 0.91987 0.90133 0.90147 0.95427 0.94455 0.87787 0.87602 0.92490 0.87393 0.95110 0.83612 0.87125 0.95051 0.93089 0.93890 0.99608 0.99805 0.92019 0.87755 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.61 127.69 1.23 1.54 16 2 N -0.56 -10.01 4.99 -921.45 -4.59 -14.60 16 3 C 0.02 0.38 5.66 86.31 0.49 0.87 16 4 C 0.06 1.30 7.01 72.01 0.50 1.80 16 5 O -0.41 -11.65 9.81 -148.98 -1.46 -13.11 16 6 C 0.10 2.28 3.08 30.63 0.09 2.38 16 7 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 8 C 0.07 1.70 5.42 86.30 0.47 2.17 16 9 N -0.70 -21.99 6.50 -513.88 -3.34 -25.33 16 10 C 0.07 2.27 6.10 86.30 0.53 2.80 16 11 C 0.05 2.06 6.28 71.98 0.45 2.51 16 12 O -0.41 -20.86 9.85 -148.98 -1.47 -22.33 16 13 C 0.21 12.33 5.69 71.24 0.41 12.73 16 14 C -0.55 -33.63 9.43 25.60 0.24 -33.39 16 15 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 18 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.03 0.58 4.95 86.31 0.43 1.01 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.35 13.21 7.68 -89.70 -0.69 12.52 16 33 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -70.25 334.33 -2.97 -73.22 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.29 Total: 16.41 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.30 Total: -4.82 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -7.65 Total: -96.79 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.93 Total: -35.44 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.25 -2.97 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385403323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.106 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds