Wall clock time and date at job start Mon Mar 30 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00039 * 2 1 4 4 H 1.08995 * 110.27440 * 30.63105 * 3 2 1 5 5 C 1.53999 * 110.30635 * 268.54233 * 3 2 1 6 6 N 1.47897 * 107.05576 * 242.21244 * 5 3 2 7 7 C 1.46906 * 110.99785 * 214.15661 * 6 5 3 8 8 C 1.50703 * 109.47109 * 170.00020 * 7 6 5 9 9 O 1.21282 * 120.00082 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46919 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99810 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99856 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00262 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46945 * 90.00078 * 16 14 12 18 18 H 1.48497 * 109.47479 * 210.00219 * 16 14 12 19 19 H 1.48504 * 109.47204 * 330.00549 * 16 14 12 20 20 C 1.48539 * 105.82268 * 334.66962 * 6 5 3 21 21 C 1.54597 * 110.38961 * 152.78120 * 3 2 1 22 22 H 1.08998 * 110.72754 * 22.55728 * 21 3 2 23 23 O 1.42904 * 110.72200 * 259.44955 * 21 3 2 24 24 H 1.09003 * 109.46856 * 60.00281 * 1 2 3 25 25 H 1.08998 * 109.47472 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46973 * 300.00564 * 1 2 3 27 27 H 1.08997 * 109.91166 * 122.85695 * 5 3 2 28 28 H 1.08994 * 110.08267 * 1.65979 * 5 3 2 29 29 H 1.08992 * 109.47459 * 289.99939 * 7 6 5 30 30 H 1.09004 * 109.47040 * 50.00090 * 7 6 5 31 31 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47703 * 299.99475 * 11 10 8 33 33 H 1.09001 * 109.47464 * 60.00214 * 11 10 8 34 34 H 0.96999 * 119.99896 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.66256 * 157.64376 * 20 6 5 36 36 H 1.08992 * 110.66782 * 280.77446 * 20 6 5 37 37 H 0.96698 * 114.00164 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3602 2.0083 0.5209 5 6 2.2612 1.7787 -1.4438 6 7 3.7204 1.9706 -1.5900 7 6 4.0162 3.0906 -2.4934 8 6 5.4868 3.4136 -2.4283 9 8 6.2165 2.7741 -1.7007 10 7 5.9909 4.4138 -3.1780 11 6 7.4205 4.7274 -3.1151 12 6 7.7239 5.8764 -4.0418 13 1 6.9310 6.3282 -4.6194 14 6 9.0137 6.3510 -4.1521 15 7 9.2784 7.3540 -4.9604 16 14 10.3850 5.5701 -3.1525 17 1 10.9920 4.4588 -3.9284 18 1 11.4224 6.5897 -2.8539 19 1 9.8307 5.0406 -1.8806 20 6 4.2325 2.2405 -0.2221 21 6 3.4066 1.2734 0.6628 22 1 3.8259 0.2678 0.6305 23 8 3.3383 1.7477 2.0091 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7431 2.7212 -1.6208 28 1 1.9130 1.0255 -2.1504 29 1 3.7497 2.8147 -3.5136 30 1 3.4386 3.9640 -2.1905 31 1 5.4071 4.9255 -3.7597 32 1 7.6876 5.0027 -2.0949 33 1 7.9978 3.8541 -3.4187 34 1 10.1858 7.6881 -5.0378 35 1 5.2955 2.0089 -0.1567 36 1 4.0451 3.2761 0.0614 37 1 4.1884 1.7474 2.4699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395341544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:21 Heat of formation + Delta-G solvation = -113.238263 kcal Electronic energy + Delta-G solvation = -19487.969660 eV Core-core repulsion = 16266.011257 eV Total energy + Delta-G solvation = -3221.958403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12252 -38.76061 -36.98983 -35.94161 -34.31883 -32.42489 -31.01117 -28.46421 -28.24750 -26.91830 -25.48166 -22.30087 -21.39975 -20.98293 -19.96276 -18.05977 -17.29413 -16.75898 -16.12405 -15.97060 -15.50468 -15.28528 -15.13956 -14.56925 -14.33021 -13.92389 -13.75535 -13.15217 -12.86888 -12.68663 -12.62464 -12.47866 -12.30205 -12.03164 -11.71815 -11.40201 -11.06527 -10.81908 -10.66080 -10.18101 -10.00296 -9.92767 -9.53247 -9.12527 -8.81197 -8.49876 -8.18117 -6.24533 -4.27163 3.14079 3.24905 3.31156 3.32632 3.39044 3.50907 3.95553 4.28439 4.30687 4.44553 4.69613 4.89376 5.03498 5.08767 5.10644 5.12312 5.21438 5.31214 5.32555 5.38192 5.43436 5.47493 5.64215 5.82366 6.12803 6.67871 6.69778 6.84559 6.94022 7.03019 7.18773 7.35162 7.45892 8.09162 8.46249 8.71450 8.87770 9.35320 10.87423 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.003865 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.277866 B = 7243.637015 C = 7649.466037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.085 3.915 4 H 0.078 0.922 5 C 0.016 3.984 6 N -0.490 5.490 7 C 0.025 3.975 8 C 0.501 3.499 9 O -0.545 6.545 10 N -0.704 5.704 11 C 0.222 3.778 12 C -0.545 4.545 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.005 3.995 21 C 0.099 3.901 22 H 0.084 0.916 23 O -0.565 6.565 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.050 0.950 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 -10.756 9.171 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.027 3.973 4 H 0.096 0.904 5 C -0.113 4.113 6 N -0.216 5.216 7 C -0.106 4.106 8 C 0.285 3.715 9 O -0.424 6.424 10 N -0.353 5.353 11 C 0.100 3.900 12 C -0.583 4.583 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.704 3.296 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.123 4.123 21 C 0.040 3.960 22 H 0.102 0.898 23 O -0.371 6.371 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.068 0.932 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.002 -11.628 9.232 21.830 hybrid contribution 0.441 0.989 0.387 1.150 sum -15.561 -10.639 9.619 21.163 Atomic orbital electron populations 1.22810 0.81000 1.02831 1.00005 1.87959 1.19692 1.26861 1.94835 1.22854 0.94700 0.85357 0.94437 0.90394 1.23463 0.89625 1.01141 0.97045 1.64583 1.09670 1.38592 1.08766 1.22302 0.95022 0.93450 0.99842 1.20289 0.89507 0.80694 0.80964 1.90569 1.60852 1.50851 1.40120 1.46163 1.12156 1.33484 1.43540 1.19490 0.76740 0.96245 0.97570 1.21089 0.95959 1.15752 1.25478 0.90262 1.24803 0.98536 0.94481 0.94820 1.69879 1.20999 1.25316 1.36740 0.86801 0.81854 0.79381 0.81544 1.19801 1.20896 1.18543 1.24179 1.02942 0.97838 0.87321 1.22783 0.93884 0.97842 0.81513 0.89776 1.86410 1.36889 1.88513 1.25250 0.93952 0.89512 0.93979 0.92849 0.88859 0.87634 0.91889 0.76991 0.95740 0.96061 0.92221 0.85910 0.93206 0.76653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.86 101.05 1.10 1.34 16 2 O -0.38 -4.40 10.30 -35.23 -0.36 -4.76 16 3 C 0.09 0.98 3.22 -25.37 -0.08 0.90 16 4 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 5 C 0.02 0.17 6.50 -2.75 -0.02 0.16 16 6 N -0.49 -6.84 5.26 -231.89 -1.22 -8.06 16 7 C 0.03 0.34 5.52 -4.97 -0.03 0.32 16 8 C 0.50 9.21 7.54 -10.98 -0.08 9.13 16 9 O -0.55 -11.76 13.52 5.56 0.08 -11.68 16 10 N -0.70 -13.85 5.55 -61.47 -0.34 -14.20 16 11 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 12 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 13 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 15 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 16 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C 0.00 0.07 5.03 -1.90 -0.01 0.06 16 21 C 0.10 1.23 4.17 -24.87 -0.10 1.13 16 22 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 23 O -0.56 -6.52 13.41 -35.23 -0.47 -7.00 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 16 27 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 28 H 0.09 1.00 7.97 -51.93 -0.41 0.59 16 29 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.74 7.81 -51.93 -0.41 0.33 16 31 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 32 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 33 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.12 2.01 5.97 -51.93 -0.31 1.70 16 36 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 37 H 0.39 2.96 9.12 45.56 0.42 3.38 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -33.09 306.94 -6.00 -39.09 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.72 Total: 5.62 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.32 Total: 5.32 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.79 Total: -47.81 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.76 Total: -23.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.09 -6.00 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395341544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.153 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds