Wall clock time and date at job start Mon Mar 30 2020 04:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00390 * 2 1 4 4 C 1.53004 * 110.28522 * 307.00360 * 3 2 1 5 5 O 1.42903 * 109.46772 * 301.57186 * 4 3 2 6 6 C 1.54259 * 110.33015 * 184.87185 * 3 2 1 7 7 C 1.54379 * 105.06372 * 241.10371 * 6 3 2 8 8 N 1.48565 * 104.59253 * 23.84877 * 7 6 3 9 9 C 1.46900 * 110.99952 * 200.95715 * 8 7 6 10 10 C 1.50692 * 109.47409 * 290.13151 * 9 8 7 11 11 O 1.21300 * 120.00163 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00212 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99883 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00605 * 359.97438 * 13 12 10 15 15 C 1.38960 * 119.99778 * 179.97438 * 13 12 10 16 16 N 1.31404 * 119.99747 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00040 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46942 * 89.99968 * 17 15 13 19 19 H 1.48495 * 109.47471 * 210.00238 * 17 15 13 20 20 H 1.48501 * 109.47492 * 330.00693 * 17 15 13 21 21 C 1.48560 * 104.22164 * 320.51983 * 8 7 6 22 22 H 1.09001 * 109.47073 * 65.81336 * 1 2 3 23 23 H 1.09004 * 109.47078 * 185.81329 * 1 2 3 24 24 H 1.09000 * 109.47175 * 305.80965 * 1 2 3 25 25 H 1.08999 * 109.47390 * 61.57766 * 4 3 2 26 26 H 1.08998 * 109.47205 * 181.58093 * 4 3 2 27 27 H 0.96702 * 113.99934 * 179.97438 * 5 4 3 28 28 H 1.08999 * 110.31938 * 0.02562 * 6 3 2 29 29 H 1.09001 * 110.32113 * 122.10073 * 6 3 2 30 30 H 1.09001 * 110.41063 * 142.62973 * 7 6 3 31 31 H 1.08993 * 110.40908 * 265.07270 * 7 6 3 32 32 H 1.09007 * 109.46805 * 50.13119 * 9 8 7 33 33 H 1.08993 * 109.46865 * 170.12540 * 9 8 7 34 34 H 0.96994 * 119.99667 * 359.97438 * 12 10 9 35 35 H 0.97000 * 120.00035 * 179.97438 * 16 15 13 36 36 H 1.08997 * 110.40898 * 280.69929 * 21 8 7 37 37 H 1.09003 * 110.40802 * 158.26122 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4370 2.1413 -1.1461 5 8 1.6923 1.4841 -2.3890 6 6 3.5449 1.2087 -0.1228 7 6 4.0923 1.8569 1.1669 8 7 2.9843 1.7308 2.1486 9 6 3.1331 2.7047 3.2382 10 6 4.3094 2.3206 4.0982 11 8 4.9598 1.3325 3.8300 12 7 4.6384 3.0745 5.1659 13 6 5.7089 2.7254 5.9478 14 1 6.2885 1.8461 5.7086 15 6 6.0483 3.5030 7.0483 16 7 5.3429 4.5727 7.3397 17 14 7.5065 3.0270 8.1143 18 1 8.7355 3.6750 7.5898 19 1 7.2673 3.4756 9.5095 20 1 7.6764 1.5519 8.0908 21 6 1.7595 2.0040 1.3536 22 1 -0.3633 0.4210 -0.9375 23 1 -0.3633 -1.0224 0.1041 24 1 -0.3633 0.6013 0.8334 25 1 0.3616 2.2559 -1.0098 26 1 1.9093 3.1236 -1.1509 27 1 1.3554 1.9585 -3.1614 28 1 3.8547 0.1654 -0.1836 29 1 3.8897 1.7566 -0.9997 30 1 4.9739 1.3203 1.5175 31 1 4.3290 2.9066 0.9937 32 1 3.2983 3.6970 2.8185 33 1 2.2272 2.7128 3.8443 34 1 4.1181 3.8645 5.3805 35 1 5.5795 5.1153 8.1081 36 1 1.6312 3.0768 1.2098 37 1 0.8846 1.5781 1.8449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401967736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:36 Heat of formation + Delta-G solvation = -143.526763 kcal Electronic energy + Delta-G solvation = -19864.490466 eV Core-core repulsion = 16641.218656 eV Total energy + Delta-G solvation = -3223.271811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16193 -39.93376 -37.72632 -37.00666 -35.90171 -33.38054 -32.80369 -30.19561 -28.75632 -27.68692 -26.56417 -25.01581 -22.56564 -21.20736 -20.77050 -19.85642 -18.30753 -18.01006 -17.71501 -16.98232 -16.56802 -16.25213 -16.04115 -15.81017 -15.58239 -15.31339 -14.71490 -14.42917 -14.17298 -13.81904 -13.48459 -13.25351 -13.02054 -12.92266 -12.87575 -12.52271 -12.41849 -12.25563 -12.21546 -12.11567 -11.50531 -11.41813 -10.95098 -10.47825 -10.30011 -10.00737 -9.38166 -8.46588 -5.95033 1.37818 1.41541 1.54413 2.05500 2.28353 2.64676 2.84397 3.19685 3.26533 3.34889 3.62685 3.76122 4.06339 4.17245 4.25025 4.32873 4.39596 4.41857 4.43711 4.48667 4.53555 4.56777 4.68362 4.78759 4.87316 4.92524 5.09733 5.16227 5.41093 5.80995 5.86324 6.07594 6.39289 6.61350 6.91432 7.13515 7.56489 8.13264 8.70990 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.050503 B = 0.003942 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.293507 B = 7100.411152 C = 7157.119194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.114 3.886 4 C 0.062 3.938 5 O -0.579 6.579 6 C -0.099 4.099 7 C 0.038 3.962 8 N -0.508 5.508 9 C 0.047 3.953 10 C 0.441 3.559 11 O -0.617 6.617 12 N -0.574 5.574 13 C -0.333 4.333 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.275 1.275 21 C 0.013 3.987 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.397 0.603 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.079 0.921 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 1.370 -16.129 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.310 6.310 3 C 0.073 3.927 4 C -0.017 4.017 5 O -0.388 6.388 6 C -0.137 4.137 7 C -0.090 4.090 8 N -0.232 5.232 9 C -0.084 4.084 10 C 0.228 3.772 11 O -0.503 6.503 12 N -0.211 5.211 13 C -0.463 4.463 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.200 1.200 21 C -0.115 4.115 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.247 0.753 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.366 -0.270 -15.495 19.219 hybrid contribution 0.167 1.515 0.300 1.553 sum -11.199 1.244 -15.195 18.917 Atomic orbital electron populations 1.22936 0.80251 1.03500 1.00769 1.88030 1.21090 1.27049 1.94793 1.22299 0.93898 0.83807 0.92654 1.22710 1.00260 0.94870 0.83839 1.86530 1.83361 1.52468 1.16408 1.22225 0.92739 1.01868 0.96892 1.23096 0.95273 0.99308 0.91297 1.65035 1.02800 1.47095 1.08290 1.21944 0.97542 0.94758 0.94175 1.20757 0.88075 0.84955 0.83430 1.90494 1.56585 1.29837 1.73400 1.41904 1.28520 1.26004 1.24715 1.19647 1.07726 1.11060 1.07862 0.90534 1.26007 1.01422 0.95322 0.98362 1.69663 1.40987 1.16076 1.29412 0.84943 0.77700 0.78363 0.77424 1.19562 1.19421 1.19966 1.23724 0.94169 1.00289 0.93309 0.92631 0.89285 0.92963 0.91080 0.90901 0.75256 0.91909 0.88440 0.92096 0.92984 0.90578 0.87090 0.76959 0.91281 0.90319 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.08 113.37 1.14 1.55 16 2 O -0.39 -11.07 10.21 -139.79 -1.43 -12.50 16 3 C 0.11 2.79 0.86 -9.90 -0.01 2.78 16 4 C 0.06 1.00 5.02 71.98 0.36 1.37 16 5 O -0.58 -10.06 13.20 -139.79 -1.85 -11.91 16 6 C -0.10 -2.84 6.27 31.49 0.20 -2.64 16 7 C 0.04 1.30 5.80 86.45 0.50 1.80 16 8 N -0.51 -17.66 5.06 -886.06 -4.49 -22.15 16 9 C 0.05 1.68 5.30 85.55 0.45 2.13 16 10 C 0.44 21.66 7.58 87.65 0.66 22.33 16 11 O -0.62 -35.62 14.42 -3.09 -0.04 -35.67 16 12 N -0.57 -29.99 5.29 -306.98 -1.62 -31.61 16 13 C -0.33 -19.29 9.68 84.04 0.81 -18.47 16 14 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 15 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 16 N -0.92 -49.92 13.05 21.67 0.28 -49.64 16 17 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 C 0.01 0.32 5.57 86.45 0.48 0.80 16 22 H 0.06 0.87 6.78 -2.39 -0.02 0.86 16 23 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.05 0.87 6.45 -2.39 -0.02 0.86 16 25 H 0.07 0.86 6.78 -2.39 -0.02 0.84 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.40 2.74 9.12 -74.06 -0.68 2.07 16 28 H 0.06 2.07 7.98 -2.39 -0.02 2.05 16 29 H 0.10 2.35 7.59 -2.39 -0.02 2.33 16 30 H 0.06 2.57 6.91 -2.39 -0.02 2.56 16 31 H 0.05 1.58 7.82 -2.39 -0.02 1.57 16 32 H 0.08 2.31 7.88 -2.38 -0.02 2.29 16 33 H 0.11 3.45 8.13 -2.39 -0.02 3.43 16 34 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 35 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.08 1.49 7.72 -2.39 -0.02 1.47 16 37 H 0.09 2.20 6.41 -2.39 -0.02 2.19 16 Total: -1.00 -75.02 302.98 -2.35 -77.37 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.31 Total: 29.09 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.07 Total: 11.48 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.83 Total: -103.39 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -3.32 Total: -60.07 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -75.02 -2.35 -77.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401967736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.159 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds