Wall clock time and date at job start Mon Mar 30 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99802 * 2 1 4 4 H 1.09003 * 110.78011 * 31.78858 * 3 2 1 5 5 C 1.54318 * 110.72089 * 268.54521 * 3 2 1 6 6 N 1.47026 * 107.27321 * 219.44520 * 5 3 2 7 7 C 1.34771 * 125.65100 * 178.67463 * 6 5 3 8 8 O 1.21587 * 120.00199 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00238 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00151 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46867 * 89.99844 * 15 13 11 17 17 H 1.48495 * 109.47582 * 209.99928 * 15 13 11 18 18 H 1.48503 * 109.47229 * 330.00482 * 15 13 11 19 19 C 1.47425 * 108.70074 * 358.94056 * 6 5 3 20 20 C 1.54909 * 104.83141 * 24.13120 * 19 6 5 21 21 H 1.08996 * 111.01049 * 81.06064 * 20 19 6 22 22 O 1.42909 * 111.03691 * 204.90488 * 20 19 6 23 23 C 1.42900 * 113.99286 * 262.21105 * 22 20 19 24 24 H 1.08997 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47327 * 299.99819 * 1 2 3 26 26 H 1.09000 * 109.46948 * 59.99933 * 1 2 3 27 27 H 1.09005 * 109.88370 * 100.03141 * 5 3 2 28 28 H 1.08994 * 109.88352 * 338.86519 * 5 3 2 29 29 H 0.97000 * 119.99585 * 0.02562 * 9 7 6 30 30 H 1.08997 * 109.47303 * 300.00346 * 10 9 7 31 31 H 1.09001 * 109.46971 * 60.00409 * 10 9 7 32 32 H 0.96999 * 120.00434 * 180.02562 * 14 13 11 33 33 H 1.08996 * 110.37004 * 142.96468 * 19 6 5 34 34 H 1.09002 * 110.37038 * 265.28812 * 19 6 5 35 35 H 1.09001 * 109.46992 * 179.97438 * 23 22 20 36 36 H 1.09002 * 109.47535 * 299.99683 * 23 22 20 37 37 H 1.09001 * 109.47190 * 60.00190 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3761 2.0111 0.5369 5 6 2.2657 1.7894 -1.4429 6 7 3.5562 2.4939 -1.4450 7 6 4.1485 3.0450 -2.5228 8 8 3.6102 2.9818 -3.6112 9 7 5.3372 3.6671 -2.3942 10 6 5.9814 4.2655 -3.5659 11 6 7.2889 4.8923 -3.1551 12 1 7.6079 4.8495 -2.1241 13 6 8.0773 5.5213 -4.0951 14 7 7.6882 5.5748 -5.3502 15 14 9.6976 6.2988 -3.5857 16 1 10.7869 5.2966 -3.7057 17 1 9.9906 7.4563 -4.4687 18 1 9.6037 6.7615 -2.1778 19 6 4.0979 2.4922 -0.0738 20 6 3.4353 1.2719 0.6127 21 1 3.9514 0.3483 0.3509 22 8 3.3873 1.4444 2.0306 23 6 4.4463 0.7895 2.7318 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.4717 2.4692 -1.7520 28 1 2.3088 0.9350 -2.1183 29 1 5.7666 3.7178 -1.5258 30 1 6.1677 3.4933 -4.3122 31 1 5.3288 5.0295 -3.9887 32 1 8.2431 6.0170 -6.0117 33 1 5.1812 2.3741 -0.0941 34 1 3.8254 3.4125 0.4429 35 1 4.3391 0.9689 3.8016 36 1 4.4034 -0.2820 2.5366 37 1 5.4046 1.1826 2.3922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:25 Heat of formation + Delta-G solvation = -109.202139 kcal Electronic energy + Delta-G solvation = -19622.358187 eV Core-core repulsion = 16400.574803 eV Total energy + Delta-G solvation = -3221.783383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18632 -38.53698 -37.47568 -35.75619 -34.16559 -32.33930 -30.39629 -28.68690 -27.25495 -26.73632 -26.31399 -23.37250 -22.16807 -21.26193 -19.44746 -18.22005 -17.65972 -16.38517 -15.87761 -15.80810 -15.53477 -15.36511 -15.09722 -14.90646 -14.46654 -14.14752 -13.37744 -13.17314 -13.00896 -12.81229 -12.41870 -12.10882 -11.96621 -11.85018 -11.70551 -11.52451 -10.95848 -10.88038 -10.81200 -10.31806 -10.17937 -9.80533 -9.39333 -9.35460 -8.73446 -8.45386 -7.75014 -6.14860 -4.21595 2.91499 3.16887 3.25195 3.31353 3.33936 3.85116 3.88657 4.24068 4.32998 4.49397 4.77668 4.88252 4.96775 5.03333 5.16551 5.18640 5.19645 5.21200 5.26722 5.45774 5.48072 5.51516 5.63222 5.72265 5.82136 6.38637 6.83928 6.94599 7.14782 7.49582 7.55540 7.57051 7.85764 8.01986 8.74830 8.88320 9.29978 9.47110 10.95412 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.004405 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.166378 B = 6354.942164 C = 7219.452457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.079 3.921 4 H 0.089 0.911 5 C 0.111 3.889 6 N -0.640 5.640 7 C 0.713 3.287 8 O -0.593 6.593 9 N -0.725 5.725 10 C 0.266 3.734 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.086 3.914 20 C 0.081 3.919 21 H 0.091 0.909 22 O -0.374 6.374 23 C 0.030 3.970 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.386 0.614 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -9.833 16.004 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.014 4.014 6 N -0.383 5.383 7 C 0.415 3.585 8 O -0.471 6.471 9 N -0.377 5.377 10 C 0.145 3.855 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.732 3.268 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.038 4.038 20 C 0.022 3.978 21 H 0.109 0.891 22 O -0.292 6.292 23 C -0.067 4.067 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.219 0.781 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.367 -9.801 14.981 20.688 hybrid contribution 1.137 0.528 0.531 1.361 sum -9.230 -9.274 15.512 20.294 Atomic orbital electron populations 1.22837 0.80545 1.02945 1.00358 1.87921 1.20187 1.26310 1.94789 1.23212 0.94453 0.85695 0.94586 0.89289 1.22086 0.86043 0.97119 0.96133 1.47331 1.22437 1.61493 1.07072 1.15641 0.81692 0.78835 0.82332 1.90886 1.65968 1.65712 1.24579 1.45746 1.19385 1.58522 1.14094 1.19020 0.91424 0.92957 0.82068 1.21212 1.04296 1.37218 0.95321 0.91972 1.24941 0.98448 0.95867 0.94721 1.69979 1.38028 1.42772 1.01473 0.86406 0.83092 0.78856 0.78488 1.20477 1.20997 1.19763 1.22551 0.99312 0.98579 0.83361 1.23286 0.95223 0.98123 0.81182 0.89147 1.87883 1.49696 1.74520 1.17070 1.22858 0.90032 0.96520 0.97265 0.89462 0.93724 0.93606 0.91146 0.90473 0.78110 0.95645 0.95614 0.92442 0.90084 0.90424 0.89426 0.93671 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.88 101.05 1.10 1.34 16 2 O -0.37 -4.31 10.43 -35.23 -0.37 -4.68 16 3 C 0.08 0.92 3.13 -24.90 -0.08 0.84 16 4 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 5 C 0.11 1.58 6.64 -3.07 -0.02 1.56 16 6 N -0.64 -10.68 3.33 -176.24 -0.59 -11.27 16 7 C 0.71 15.61 8.49 -86.92 -0.74 14.87 16 8 O -0.59 -15.45 16.67 5.29 0.09 -15.36 16 9 N -0.73 -16.15 5.51 -66.42 -0.37 -16.52 16 10 C 0.27 7.25 5.43 -5.20 -0.03 7.22 16 11 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 15 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.09 1.12 6.31 -2.53 -0.02 1.10 16 20 C 0.08 0.93 3.27 -24.58 -0.08 0.85 16 21 H 0.09 1.03 7.83 -51.93 -0.41 0.63 16 22 O -0.37 -4.13 10.52 -35.23 -0.37 -4.50 16 23 C 0.03 0.24 10.84 101.05 1.10 1.34 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.39 7.45 6.80 -40.82 -0.28 7.17 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 0.99 7.30 -51.93 -0.38 0.61 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -33.77 315.47 -5.96 -39.73 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.65 Total: 1.87 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 0.82 Total: 15.61 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.22 Total: -53.32 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.65 Total: -24.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.77 -5.96 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.469 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds