Wall clock time and date at job start Mon Mar 30 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99802 * 2 1 4 4 H 1.09003 * 110.78011 * 31.78858 * 3 2 1 5 5 C 1.54318 * 110.72089 * 268.54521 * 3 2 1 6 6 N 1.47026 * 107.27321 * 219.44520 * 5 3 2 7 7 C 1.34771 * 125.65100 * 178.67463 * 6 5 3 8 8 O 1.21587 * 120.00199 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00238 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00151 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46867 * 89.99844 * 15 13 11 17 17 H 1.48495 * 109.47582 * 209.99928 * 15 13 11 18 18 H 1.48503 * 109.47229 * 330.00482 * 15 13 11 19 19 C 1.47425 * 108.70074 * 358.94056 * 6 5 3 20 20 C 1.54909 * 104.83141 * 24.13120 * 19 6 5 21 21 H 1.08996 * 111.01049 * 81.06064 * 20 19 6 22 22 O 1.42909 * 111.03691 * 204.90488 * 20 19 6 23 23 C 1.42900 * 113.99286 * 262.21105 * 22 20 19 24 24 H 1.08997 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47327 * 299.99819 * 1 2 3 26 26 H 1.09000 * 109.46948 * 59.99933 * 1 2 3 27 27 H 1.09005 * 109.88370 * 100.03141 * 5 3 2 28 28 H 1.08994 * 109.88352 * 338.86519 * 5 3 2 29 29 H 0.97000 * 119.99585 * 0.02562 * 9 7 6 30 30 H 1.08997 * 109.47303 * 300.00346 * 10 9 7 31 31 H 1.09001 * 109.46971 * 60.00409 * 10 9 7 32 32 H 0.96999 * 120.00434 * 180.02562 * 14 13 11 33 33 H 1.08996 * 110.37004 * 142.96468 * 19 6 5 34 34 H 1.09002 * 110.37038 * 265.28812 * 19 6 5 35 35 H 1.09001 * 109.46992 * 179.97438 * 23 22 20 36 36 H 1.09002 * 109.47535 * 299.99683 * 23 22 20 37 37 H 1.09001 * 109.47190 * 60.00190 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3761 2.0111 0.5369 5 6 2.2657 1.7894 -1.4429 6 7 3.5562 2.4939 -1.4450 7 6 4.1485 3.0450 -2.5228 8 8 3.6102 2.9818 -3.6112 9 7 5.3372 3.6671 -2.3942 10 6 5.9814 4.2655 -3.5659 11 6 7.2889 4.8923 -3.1551 12 1 7.6079 4.8495 -2.1241 13 6 8.0773 5.5213 -4.0951 14 7 7.6882 5.5748 -5.3502 15 14 9.6976 6.2988 -3.5857 16 1 10.7869 5.2966 -3.7057 17 1 9.9906 7.4563 -4.4687 18 1 9.6037 6.7615 -2.1778 19 6 4.0979 2.4922 -0.0738 20 6 3.4353 1.2719 0.6127 21 1 3.9514 0.3483 0.3509 22 8 3.3873 1.4444 2.0306 23 6 4.4463 0.7895 2.7318 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.4717 2.4692 -1.7520 28 1 2.3088 0.9350 -2.1183 29 1 5.7666 3.7178 -1.5258 30 1 6.1677 3.4933 -4.3122 31 1 5.3288 5.0295 -3.9887 32 1 8.2431 6.0170 -6.0117 33 1 5.1812 2.3741 -0.0941 34 1 3.8254 3.4125 0.4429 35 1 4.3391 0.9689 3.8016 36 1 4.4034 -0.2820 2.5366 37 1 5.4046 1.1826 2.3922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:25 Heat of formation + Delta-G solvation = -135.766156 kcal Electronic energy + Delta-G solvation = -19623.510089 eV Core-core repulsion = 16400.574803 eV Total energy + Delta-G solvation = -3222.935286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49438 -39.90513 -38.28882 -37.00973 -36.17651 -34.37658 -31.65132 -29.83537 -28.97098 -27.46453 -27.31550 -24.99426 -23.76138 -22.29206 -21.13291 -19.75919 -18.58265 -18.15044 -17.31745 -17.00461 -16.68160 -16.63161 -16.35504 -16.05251 -15.83478 -15.16350 -14.92171 -14.67754 -14.32065 -14.07277 -13.93099 -13.69123 -13.25995 -12.96741 -12.90017 -12.70411 -12.60453 -12.28829 -12.21211 -11.71337 -11.48490 -11.40089 -10.98696 -10.80918 -10.53218 -10.13239 -9.50579 -8.28243 -6.45150 1.42702 1.47209 1.50626 1.59351 2.09441 2.36664 2.39047 2.86637 3.06785 3.22798 3.38070 3.50936 3.86946 4.05686 4.20188 4.39222 4.46476 4.54170 4.57876 4.62019 4.65856 4.67445 4.73402 4.88287 4.91427 4.99235 5.19791 5.25087 5.46297 5.65693 5.82752 6.04621 6.06578 6.15995 6.65574 7.08287 7.24645 7.60417 8.84214 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.004405 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.166378 B = 6354.942164 C = 7219.452457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.105 0.895 5 C 0.106 3.894 6 N -0.633 5.633 7 C 0.710 3.290 8 O -0.643 6.643 9 N -0.718 5.718 10 C 0.285 3.715 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.987 3.013 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.255 1.255 19 C 0.082 3.918 20 C 0.090 3.910 21 H 0.092 0.908 22 O -0.382 6.382 23 C 0.022 3.978 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.403 0.597 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -9.990 18.896 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.123 0.877 5 C -0.018 4.018 6 N -0.374 5.374 7 C 0.412 3.588 8 O -0.525 6.525 9 N -0.372 5.372 10 C 0.162 3.838 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.810 3.190 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.179 1.179 19 C -0.041 4.041 20 C 0.031 3.969 21 H 0.110 0.890 22 O -0.300 6.300 23 C -0.074 4.074 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.239 0.761 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.695 -9.997 17.972 22.736 hybrid contribution 0.812 0.498 -0.327 1.007 sum -8.884 -9.499 17.645 21.920 Atomic orbital electron populations 1.23067 0.78843 1.04331 1.01157 1.87905 1.22092 1.26015 1.94692 1.23084 0.95041 0.86255 0.92395 0.87704 1.22286 0.84779 0.96461 0.98250 1.47185 1.23001 1.59896 1.07332 1.15748 0.81384 0.78798 0.82879 1.90843 1.67101 1.67444 1.27135 1.45323 1.19746 1.58620 1.13499 1.18468 0.91510 0.90890 0.82945 1.21573 1.04125 1.37174 0.96466 0.89825 1.26067 1.02783 0.96163 0.94455 1.70144 1.39952 1.43749 1.03056 0.85124 0.77449 0.77653 0.78776 1.19549 1.20937 1.17858 1.22823 1.00025 1.00170 0.81089 1.23104 0.94830 0.97186 0.81775 0.89011 1.87873 1.50795 1.74990 1.16318 1.23084 0.89553 0.96772 0.97991 0.87904 0.92341 0.93371 0.91037 0.91779 0.76108 0.99512 0.99464 0.92186 0.89150 0.89148 0.87643 0.93090 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.88 113.37 1.23 1.55 16 2 O -0.39 -8.24 10.43 -148.98 -1.55 -9.80 16 3 C 0.09 1.95 3.13 31.78 0.10 2.05 16 4 H 0.11 1.93 7.89 -2.39 -0.02 1.92 16 5 C 0.11 2.98 6.64 86.73 0.58 3.55 16 6 N -0.63 -20.90 3.33 -829.77 -2.76 -23.66 16 7 C 0.71 31.81 8.49 179.06 1.52 33.33 16 8 O -0.64 -35.02 16.67 -3.99 -0.07 -35.09 16 9 N -0.72 -32.49 5.51 -482.31 -2.66 -35.14 16 10 C 0.28 16.14 5.43 85.63 0.46 16.61 16 11 C -0.56 -30.57 9.28 25.60 0.24 -30.33 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.01 0.28 5.46 84.65 0.46 0.74 16 14 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 15 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 19 C 0.08 1.96 6.31 86.85 0.55 2.51 16 20 C 0.09 1.89 3.27 31.99 0.10 1.99 16 21 H 0.09 1.91 7.83 -2.39 -0.02 1.89 16 22 O -0.38 -7.33 10.52 -148.98 -1.57 -8.90 16 23 C 0.02 0.29 10.84 113.37 1.23 1.52 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 0.68 8.11 -2.39 -0.02 0.67 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 28 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 29 H 0.40 15.23 6.80 -92.71 -0.63 14.60 16 30 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.09 2.01 7.30 -2.39 -0.02 1.99 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -74.93 315.47 0.61 -74.32 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.43 Total: 16.66 kcal Atomic # 6 Polarization: 27.03 SS G_CDS: 6.48 Total: 33.51 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -5.13 Total: -115.02 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -3.19 Total: -53.78 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -74.93 0.61 -74.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.451 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds