Wall clock time and date at job start Mon Mar 30 2020 04:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86809 * 119.99554 * 2 1 4 4 H 1.48503 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47072 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47069 * 60.00182 * 3 2 1 7 7 C 1.38949 * 120.00613 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99468 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99752 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99883 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00096 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46861 * 180.02562 * 12 10 9 14 14 C 1.46840 * 111.00349 * 66.04648 * 13 12 10 15 15 C 1.53041 * 109.52622 * 174.15822 * 14 13 12 16 16 C 1.53112 * 109.27719 * 59.18161 * 15 14 13 17 17 C 1.53124 * 109.16170 * 302.34560 * 16 15 14 18 18 H 1.09005 * 109.50437 * 297.67744 * 17 16 15 19 19 C 1.52996 * 109.50696 * 177.59782 * 17 16 15 20 20 C 1.52997 * 109.47131 * 64.99818 * 19 17 16 21 21 F 1.39905 * 109.47157 * 180.02562 * 20 19 17 22 22 C 1.46853 * 111.00006 * 301.83373 * 13 12 10 23 23 H 0.96998 * 120.00606 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00576 * 0.02562 * 9 7 2 25 25 H 1.08993 * 109.46661 * 60.00344 * 12 10 9 26 26 H 1.08997 * 109.47242 * 299.99972 * 12 10 9 27 27 H 1.09007 * 109.46298 * 54.14302 * 14 13 12 28 28 H 1.09002 * 109.46595 * 294.17857 * 14 13 12 29 29 H 1.08997 * 109.50206 * 299.23786 * 15 14 13 30 30 H 1.08997 * 109.50255 * 179.12220 * 15 14 13 31 31 H 1.09001 * 109.52513 * 182.44774 * 16 15 14 32 32 H 1.08991 * 109.52650 * 62.25117 * 16 15 14 33 33 H 1.09001 * 109.46993 * 304.99686 * 19 17 16 34 34 H 1.09004 * 109.47298 * 185.00101 * 19 17 16 35 35 H 1.09001 * 109.46832 * 60.00325 * 20 19 17 36 36 H 1.09004 * 109.47261 * 300.00306 * 20 19 17 37 37 H 1.09000 * 109.46051 * 65.82851 * 22 13 12 38 38 H 1.09001 * 109.46374 * 305.86077 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7081 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5576 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1988 -5.9794 -0.0004 14 6 2.9629 -6.0176 1.2530 15 6 3.8393 -7.2720 1.2797 16 6 4.7911 -7.2492 0.0805 17 6 3.9716 -7.1604 -1.2100 18 1 3.3424 -8.0456 -1.3031 19 6 4.9165 -7.0768 -2.4104 20 6 5.7117 -8.3788 -2.5252 21 9 6.5761 -8.3021 -3.6225 22 6 3.0914 -5.9093 -1.1645 23 1 -0.4851 0.8400 -0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6179 -4.9205 -0.8914 26 1 0.6171 -4.9209 0.8886 27 1 2.2742 -6.0378 2.0977 28 1 3.5944 -5.1318 1.3206 29 1 3.2075 -8.1585 1.2261 30 1 4.4179 -7.2920 2.2032 31 1 5.3873 -8.1616 0.0712 32 1 5.4493 -6.3836 0.1542 33 1 5.6039 -6.2419 -2.2742 34 1 4.3356 -6.9244 -3.3201 35 1 5.0242 -9.2136 -2.6614 36 1 6.2926 -8.5312 -1.6155 37 1 3.7223 -5.0240 -1.0856 38 1 2.4960 -5.8508 -2.0756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595754365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:25 Heat of formation + Delta-G solvation = -103.262589 kcal Electronic energy + Delta-G solvation = -19820.754170 eV Core-core repulsion = 16611.601134 eV Total energy + Delta-G solvation = -3209.153036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.62151 -39.55095 -37.57948 -34.64097 -33.73113 -31.96725 -31.30086 -28.75828 -27.18923 -24.74702 -23.69404 -22.61138 -21.08814 -19.58439 -19.18269 -17.87780 -16.21901 -16.10886 -15.98128 -15.26231 -15.10315 -14.61005 -14.51077 -14.16510 -14.02766 -13.70675 -13.42955 -13.20902 -12.58425 -12.11086 -11.80861 -11.78677 -11.54343 -11.49339 -11.19487 -10.94297 -10.76014 -10.57240 -10.48724 -10.37956 -10.28761 -10.08685 -9.91855 -9.49382 -9.19988 -8.02166 -7.38138 -6.47792 -3.89246 3.11110 3.22785 3.29574 3.80562 4.12585 4.23624 4.66478 4.73809 4.81489 4.98231 5.00698 5.06237 5.19344 5.21752 5.35677 5.58199 5.71787 5.73572 5.77514 5.85781 5.93434 6.04198 6.07133 6.11419 6.17574 6.18600 6.28001 6.38712 6.43598 6.63495 6.83399 7.41460 7.48967 7.51371 7.99189 8.53689 9.10812 9.47086 9.97650 10.68748 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.004556 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.458782 B = 6143.720782 C = 6683.446121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.557 5.557 10 C 0.406 3.594 11 O -0.593 6.593 12 C 0.041 3.959 13 N -0.514 5.514 14 C 0.041 3.959 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.077 4.077 18 H 0.073 0.927 19 C -0.147 4.147 20 C 0.061 3.939 21 F -0.224 7.224 22 C 0.038 3.962 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -14.141 -0.732 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.192 5.192 10 C 0.192 3.808 11 O -0.481 6.481 12 C -0.091 4.091 13 N -0.237 5.237 14 C -0.087 4.087 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.096 4.096 18 H 0.091 0.909 19 C -0.185 4.185 20 C 0.006 3.994 21 F -0.205 7.205 22 C -0.089 4.089 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.786 -14.412 -0.783 15.206 hybrid contribution 0.104 1.707 0.018 1.710 sum 4.890 -12.705 -0.765 13.635 Atomic orbital electron populations 1.69616 1.05974 1.28209 1.50103 1.25286 0.95613 0.99815 0.97079 0.85816 0.79701 0.81128 0.77794 1.19248 1.20667 1.20673 1.19760 0.93401 0.82399 1.47633 0.87937 1.42076 1.09320 1.04955 1.62832 1.21138 0.88839 0.85989 0.84867 1.90388 1.13935 1.86862 1.56874 1.22036 0.95485 0.88182 1.03353 1.62409 1.18204 1.40111 1.02953 1.22215 0.96656 0.98320 0.91520 1.21521 0.97412 0.98474 0.97503 1.21681 0.97794 1.01345 0.94622 1.21057 0.95821 0.99460 0.93307 0.90910 1.22159 0.99157 0.97437 0.99769 1.22093 0.91526 0.99459 0.86314 1.92751 1.72585 1.97717 1.57461 1.22416 0.95632 0.98281 0.92592 0.91801 0.77378 0.89386 0.89446 0.91963 0.91473 0.91889 0.92067 0.92520 0.91716 0.90579 0.90794 0.91001 0.90752 0.89506 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 10 C 0.41 9.20 7.20 -10.98 -0.08 9.12 16 11 O -0.59 -14.95 11.20 5.54 0.06 -14.89 16 12 C 0.04 0.73 5.86 -4.97 -0.03 0.70 16 13 N -0.51 -8.47 4.86 -236.11 -1.15 -9.61 16 14 C 0.04 0.66 5.09 -3.84 -0.02 0.64 16 15 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 16 C -0.12 -1.44 4.98 -26.61 -0.13 -1.57 16 17 C -0.08 -0.99 2.35 -90.54 -0.21 -1.20 16 18 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.15 -1.73 5.14 -26.73 -0.14 -1.87 16 20 C 0.06 0.62 7.31 37.16 0.27 0.89 16 21 F -0.22 -2.86 17.36 2.25 0.04 -2.82 16 22 C 0.04 0.63 4.26 -3.83 -0.02 0.61 16 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 25 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 27 H 0.06 0.95 8.06 -51.92 -0.42 0.53 16 28 H 0.07 1.31 6.00 -51.93 -0.31 1.00 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.66 6.62 -51.93 -0.34 0.32 16 37 H 0.09 1.74 5.36 -51.93 -0.28 1.46 16 38 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -29.27 303.52 -7.34 -36.62 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.76 Total: 9.81 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.76 Total: -2.16 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.48 Total: -46.94 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.06 Total: -14.89 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.27 -7.34 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595754365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.647 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds