Wall clock time and date at job start Mon Mar 30 2020 04:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47091 * 2 1 4 4 N 1.46500 * 109.46809 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00251 * 275.30498 * 4 3 2 6 6 H 1.08007 * 119.99718 * 37.58438 * 5 4 3 7 7 C 1.38806 * 120.00466 * 217.57993 * 5 4 3 8 8 N 1.31623 * 119.99714 * 21.43177 * 7 5 4 9 9 Si 1.86798 * 120.00396 * 201.42485 * 7 5 4 10 10 H 1.48500 * 109.47214 * 59.99898 * 9 7 5 11 11 H 1.48500 * 109.47522 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47219 * 300.00613 * 9 7 5 13 13 C 1.46504 * 119.99873 * 95.31559 * 4 3 2 14 14 C 1.53008 * 109.46445 * 269.99471 * 13 4 3 15 15 N 1.46901 * 109.46740 * 179.97438 * 14 13 4 16 16 C 1.46467 * 111.00032 * 295.98513 * 15 14 13 17 17 C 1.53251 * 109.86011 * 162.23549 * 16 15 14 18 18 S 1.81900 * 108.50715 * 62.00111 * 17 16 15 19 19 C 1.81898 * 101.91097 * 308.69325 * 18 17 16 20 20 C 1.46463 * 111.00116 * 169.99696 * 15 14 13 21 21 H 1.08998 * 109.46826 * 60.00116 * 1 2 3 22 22 H 1.09003 * 109.47195 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47103 * 299.99734 * 1 2 3 24 24 H 1.09004 * 109.46997 * 239.99937 * 2 1 3 25 25 H 1.09000 * 109.46843 * 120.00437 * 2 1 3 26 26 H 1.09004 * 109.47251 * 60.00092 * 3 2 1 27 27 H 1.08998 * 109.47190 * 299.99661 * 3 2 1 28 28 H 0.97005 * 119.99792 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47385 * 149.99828 * 13 4 3 30 30 H 1.08997 * 109.47495 * 29.99151 * 13 4 3 31 31 H 1.08994 * 109.47216 * 60.00449 * 14 13 4 32 32 H 1.08997 * 109.47054 * 299.99420 * 14 13 4 33 33 H 1.08998 * 109.40448 * 282.35136 * 16 15 14 34 34 H 1.08998 * 109.41102 * 42.11295 * 16 15 14 35 35 H 1.09007 * 109.63182 * 302.29330 * 17 16 15 36 36 H 1.09001 * 109.79295 * 181.80334 * 17 16 15 37 37 H 1.09000 * 109.63772 * 291.60113 * 19 18 17 38 38 H 1.08999 * 109.79377 * 171.10527 * 19 18 17 39 39 H 1.08997 * 109.40820 * 317.88983 * 20 15 14 40 40 H 1.09008 * 109.39925 * 77.72846 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6874 1.9636 7 6 5.3613 2.0513 1.3741 8 7 5.6020 3.1239 0.6503 9 14 6.5968 1.4959 2.6604 10 1 7.0657 0.1246 2.3368 11 1 7.7543 2.4261 2.6692 12 1 5.9523 1.4958 3.9983 13 6 4.2380 1.5597 -1.2624 14 6 4.4932 0.1641 -1.8353 15 7 5.2277 0.2817 -3.1021 16 6 4.4256 0.9768 -4.1114 17 6 5.3309 1.4763 -5.2425 18 16 6.1128 0.0374 -6.0343 19 6 6.8042 -0.8486 -4.6041 20 6 5.6961 -1.0281 -3.5608 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.4212 3.6257 0.7845 29 1 5.1904 2.0593 -1.0848 30 1 3.6493 2.1415 -1.9716 31 1 3.5409 -0.3354 -2.0130 32 1 5.0821 -0.4177 -1.1262 33 1 3.6823 0.2912 -4.5184 34 1 3.9199 1.8254 -3.6507 35 1 6.0997 2.1321 -4.8337 36 1 4.7376 2.0210 -5.9769 37 1 7.6213 -0.2692 -4.1743 38 1 7.1732 -1.8251 -4.9179 39 1 6.0850 -1.5911 -2.7125 40 1 4.8648 -1.5738 -4.0073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685976816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:58 Heat of formation + Delta-G solvation = 1.301720 kcal Electronic energy + Delta-G solvation = -18231.547511 eV Core-core repulsion = 15593.141900 eV Total energy + Delta-G solvation = -2638.405611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51694 -37.68233 -34.63368 -33.10941 -32.52079 -31.61147 -28.37183 -27.32117 -24.87173 -24.52175 -22.67592 -21.81876 -21.52147 -18.69521 -17.84548 -16.96948 -16.58300 -16.18891 -16.02733 -15.58241 -15.24244 -14.86437 -14.80643 -14.62486 -14.28756 -13.84149 -13.51479 -13.26271 -13.21771 -12.88863 -12.84019 -12.64166 -12.49540 -12.47664 -12.10090 -11.99409 -11.90777 -11.76849 -11.36457 -11.23735 -10.69992 -10.44494 -9.33608 -8.70247 -8.52891 -7.79806 -5.44691 0.83525 1.45650 1.48479 1.53276 1.54497 2.49691 2.79133 3.26744 3.76903 3.87356 3.89363 4.12021 4.19372 4.23012 4.24613 4.39796 4.41462 4.45567 4.61784 4.62965 4.69913 4.78622 4.80008 4.84348 4.91518 4.96971 5.00014 5.18282 5.24849 5.35013 5.43698 5.62280 5.67990 5.78690 6.11150 6.17555 6.49410 7.19954 7.88990 8.41126 9.14253 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.006768 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.616642 B = 4135.969249 C = 5227.952175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.145 3.855 4 N -0.600 5.600 5 C -0.269 4.269 6 H 0.052 0.948 7 C -0.030 4.030 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.275 1.275 13 C 0.159 3.841 14 C 0.069 3.931 15 N -0.562 5.562 16 C 0.058 3.942 17 C -0.064 4.064 18 S -0.296 6.296 19 C -0.064 4.064 20 C 0.058 3.942 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.029 0.971 27 H 0.042 0.958 28 H 0.251 0.749 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -7.048 -10.109 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.322 5.322 5 C -0.400 4.400 6 H 0.070 0.930 7 C -0.228 4.228 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.201 1.201 13 C 0.033 3.967 14 C -0.061 4.061 15 N -0.288 5.288 16 C -0.072 4.072 17 C -0.213 4.213 18 S -0.071 6.071 19 C -0.213 4.213 20 C -0.071 4.071 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.364 -6.890 -11.111 13.285 hybrid contribution 0.147 -0.159 1.938 1.950 sum -2.217 -7.048 -9.173 11.778 Atomic orbital electron populations 1.21662 0.94423 1.01833 1.01824 1.21979 0.96195 0.98492 1.00365 1.21019 0.83843 0.94747 0.98467 1.43943 1.00614 1.85296 1.02309 1.19097 1.06201 1.19841 0.94840 0.93002 1.25802 1.02324 0.94687 0.99986 1.70118 1.25753 1.15772 1.43921 0.85585 0.78951 0.77590 0.79772 1.20601 1.21957 1.20113 1.20747 0.98006 0.92914 0.85065 1.22480 0.94719 1.00165 0.88698 1.61069 1.42261 1.21175 1.04286 1.22220 0.94072 0.99056 0.91808 1.23491 1.01492 0.96620 0.99654 1.86683 1.72472 1.29928 1.17990 1.23500 0.99800 1.03471 0.94499 1.22214 0.97000 0.89884 0.98046 0.92297 0.91998 0.92858 0.93309 0.94138 0.95204 0.93984 0.93993 0.91720 0.95518 0.95752 0.93200 0.93463 0.89931 0.89924 0.85756 0.89794 0.85511 0.89837 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.50 6.23 30.59 0.19 -4.31 16 3 C 0.14 5.97 5.72 86.38 0.49 6.46 16 4 N -0.60 -29.31 2.43 -701.98 -1.71 -31.02 16 5 C -0.27 -14.58 9.45 84.03 0.79 -13.79 16 6 H 0.05 2.82 7.92 -2.91 -0.02 2.80 16 7 C -0.03 -1.65 4.95 84.86 0.42 -1.23 16 8 N -0.91 -52.97 11.47 21.65 0.25 -52.72 16 9 Si 0.95 44.43 29.60 68.60 2.03 46.46 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.16 7.29 5.26 86.38 0.45 7.75 16 14 C 0.07 2.66 5.29 86.31 0.46 3.12 16 15 N -0.56 -18.57 4.41 -897.53 -3.96 -22.52 16 16 C 0.06 1.67 5.29 86.47 0.46 2.13 16 17 C -0.06 -1.64 6.69 72.07 0.48 -1.15 16 18 S -0.30 -7.56 22.40 -56.49 -1.27 -8.82 16 19 C -0.06 -1.54 6.69 72.06 0.48 -1.06 16 20 C 0.06 1.58 5.42 86.47 0.47 2.05 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.68 6.64 -2.39 -0.02 1.66 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 27 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 28 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 29 H 0.06 3.51 5.52 -2.39 -0.01 3.49 16 30 H 0.03 1.17 5.90 -2.39 -0.01 1.16 16 31 H 0.02 0.91 6.63 -2.39 -0.02 0.89 16 32 H 0.05 2.13 7.84 -2.39 -0.02 2.11 16 33 H 0.05 1.30 7.91 -2.39 -0.02 1.28 16 34 H 0.08 2.57 5.77 -2.39 -0.01 2.55 16 35 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.26 7.76 -2.39 -0.02 2.25 16 40 H 0.05 1.25 7.91 -2.38 -0.02 1.23 16 Total: -1.00 -59.49 321.71 1.75 -57.74 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.99 Total: 13.90 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.41 Total: -3.01 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -5.42 Total: -106.26 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.27 Total: -8.82 kcal Total: -59.49 1.75 -57.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685976816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.042 kcal (2) G-P(sol) polarization free energy of solvation -59.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds