Wall clock time and date at job start Mon Mar 30 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.52994 * 109.47264 * 120.00122 * 2 1 3 5 5 N 1.46903 * 109.47205 * 179.15445 * 4 2 1 6 6 C 1.46894 * 111.00331 * 285.13931 * 5 4 2 7 7 C 1.50701 * 109.47282 * 78.92578 * 6 5 4 8 8 H 1.07998 * 120.00183 * 5.35378 * 7 6 5 9 9 C 1.37880 * 119.99834 * 185.35368 * 7 6 5 10 10 N 1.31520 * 119.99638 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00325 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46925 * 90.00020 * 11 9 7 13 13 H 1.48498 * 109.47424 * 210.00106 * 11 9 7 14 14 H 1.48504 * 109.47141 * 330.00596 * 11 9 7 15 15 C 1.46893 * 111.00084 * 161.18199 * 5 4 2 16 16 H 1.08997 * 109.57885 * 173.04493 * 15 5 4 17 17 C 1.53122 * 109.52440 * 52.88188 * 15 5 4 18 18 C 1.53037 * 109.27937 * 182.44139 * 17 15 5 19 19 N 1.46829 * 109.51388 * 59.17968 * 18 17 15 20 20 C 1.46847 * 111.21236 * 298.24480 * 19 18 17 21 21 C 1.53040 * 109.51122 * 61.75172 * 20 19 18 22 22 H 1.09003 * 109.49976 * 60.76723 * 21 20 19 23 23 F 1.39903 * 109.50486 * 180.88238 * 21 20 19 24 24 H 1.09000 * 109.47266 * 299.99377 * 1 2 3 25 25 H 1.09003 * 109.47633 * 59.99790 * 1 2 3 26 26 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46841 * 240.00306 * 2 1 3 28 28 H 1.09005 * 109.46789 * 62.25236 * 3 2 1 29 29 H 1.09001 * 109.47226 * 182.24927 * 3 2 1 30 30 H 1.08998 * 109.47304 * 302.25088 * 3 2 1 31 31 H 1.09004 * 109.46948 * 59.16019 * 4 2 1 32 32 H 1.08993 * 109.47521 * 299.16320 * 4 2 1 33 33 H 1.08999 * 109.47541 * 198.92729 * 6 5 4 34 34 H 1.09003 * 109.47262 * 318.92809 * 6 5 4 35 35 H 0.97000 * 119.99463 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.49821 * 302.38391 * 17 15 5 37 37 H 1.08992 * 109.50149 * 62.49963 * 17 15 5 38 38 H 1.08998 * 109.46393 * 179.19354 * 18 17 15 39 39 H 1.08995 * 109.46476 * 299.17513 * 18 17 15 40 40 H 1.00905 * 110.97735 * 174.15836 * 19 18 17 41 41 H 1.08995 * 109.46583 * 301.74153 * 20 19 18 42 42 H 1.08996 * 109.46471 * 181.76109 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5089 -0.7390 1.2390 6 6 4.0169 -1.7173 0.2681 7 6 3.9396 -1.1346 -1.1196 8 1 3.6338 -0.1081 -1.2580 9 6 4.2592 -1.9121 -2.2125 10 7 4.1912 -1.4037 -3.4236 11 14 4.7888 -3.6874 -1.9731 12 1 3.5944 -4.5691 -2.0075 13 1 5.7226 -4.0763 -3.0603 14 1 5.4703 -3.8281 -0.6612 15 6 4.0415 -1.0047 2.5819 16 1 5.1222 -1.1352 2.5270 17 6 3.4003 -2.2764 3.1443 18 6 3.9130 -2.5144 4.5665 19 7 3.5751 -1.3604 5.4092 20 6 4.2183 -0.1359 4.9161 21 6 3.7147 0.1731 3.5043 22 1 2.6360 0.3280 3.5285 23 9 4.3426 1.3285 3.0268 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7099 1.9445 0.9095 29 1 3.1292 1.4429 -0.0403 30 1 1.6440 1.9679 -0.8691 31 1 1.6644 -1.7445 1.2567 32 1 1.6890 -0.1989 2.1391 33 1 5.0535 -1.9584 0.5036 34 1 3.4132 -2.6236 0.3157 35 1 4.4165 -1.9506 -4.1924 36 1 2.3168 -2.1600 3.1628 37 1 3.6650 -3.1262 2.5151 38 1 3.4475 -3.4112 4.9751 39 1 4.9950 -2.6441 4.5455 40 1 3.8181 -1.5335 6.3731 41 1 5.2988 -0.2770 4.8934 42 1 3.9743 0.6946 5.5785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691521457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:07 Heat of formation + Delta-G solvation = -50.018744 kcal Electronic energy + Delta-G solvation = -21302.521098 eV Core-core repulsion = 18231.509983 eV Total energy + Delta-G solvation = -3071.011115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.180 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.15915 -39.03845 -36.68846 -33.78837 -32.57701 -30.35752 -30.02441 -27.44923 -26.33960 -25.13384 -23.19367 -22.46546 -20.63821 -20.06963 -18.59689 -17.11627 -16.55724 -15.84796 -15.02322 -14.93872 -14.81911 -14.40868 -14.16819 -13.93832 -13.56473 -13.14035 -12.81569 -12.63463 -12.42340 -12.37293 -12.03719 -11.79932 -11.45885 -11.34941 -11.10370 -10.95849 -10.76273 -10.54179 -10.50787 -10.15155 -9.95756 -9.92777 -9.84589 -9.44577 -9.01404 -8.66901 -8.49901 -7.32210 -6.02076 -3.96613 3.26920 3.35582 3.36314 3.96979 4.42738 4.46222 4.69139 4.80986 4.98149 5.12110 5.18714 5.27504 5.40810 5.54050 5.56935 5.67141 5.74760 5.82557 5.84068 5.98927 6.04665 6.10883 6.14873 6.25910 6.36345 6.44669 6.55939 6.62706 6.73878 6.77572 6.83112 6.88416 7.01477 7.15213 7.36469 7.52423 7.68190 7.91069 8.06935 8.69577 9.12153 9.59786 11.09981 Molecular weight = 258.18amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.008081 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.987092 B = 3463.925642 C = 4210.251390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.125 4.125 4 C 0.074 3.926 5 N -0.512 5.512 6 C 0.164 3.836 7 C -0.505 4.505 8 H 0.097 0.903 9 C 0.068 3.932 10 N -0.898 5.898 11 Si 0.869 3.131 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.270 1.270 15 C 0.058 3.942 16 H 0.082 0.918 17 C -0.150 4.150 18 C 0.058 3.942 19 N -0.686 5.686 20 C 0.034 3.966 21 C 0.106 3.894 22 H 0.087 0.913 23 F -0.201 7.201 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.118 0.882 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.021 0.979 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.346 0.654 41 H 0.041 0.959 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -0.481 15.770 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.182 4.182 4 C -0.054 4.054 5 N -0.234 5.234 6 C 0.038 3.962 7 C -0.543 4.543 8 H 0.115 0.885 9 C -0.134 4.134 10 N -0.537 5.537 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.052 4.052 16 H 0.101 0.899 17 C -0.190 4.190 18 C -0.071 4.071 19 N -0.317 5.317 20 C -0.097 4.097 21 C 0.069 3.931 22 H 0.105 0.895 23 F -0.182 7.182 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.136 0.864 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.164 0.836 41 H 0.059 0.941 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.186 0.098 15.063 15.396 hybrid contribution 1.010 -2.022 0.531 2.322 sum -2.176 -1.924 15.593 15.861 Atomic orbital electron populations 1.21826 0.97233 1.00496 1.00478 1.21472 0.92807 0.97417 1.00955 1.21595 1.02989 0.95076 0.98560 1.22058 0.87870 0.97757 0.97680 1.62105 1.07268 1.51181 1.02823 1.20241 0.94225 0.89224 0.92521 1.21255 1.44432 1.01059 0.87555 0.88486 1.24904 0.95471 0.97701 0.95275 1.69888 1.49422 1.36514 0.97923 0.86961 0.78908 0.86473 0.77973 1.20482 1.21311 1.19508 1.22359 1.00211 0.92019 0.90593 0.89946 1.22321 1.02135 0.99462 0.95089 1.21947 0.98226 0.92929 0.94028 1.60146 1.62639 1.02859 1.06084 1.22475 0.97095 0.93627 0.96465 1.21510 0.97592 0.82468 0.91570 0.89483 1.92818 1.84624 1.51092 1.89630 0.94110 0.93136 0.93654 0.86379 0.95093 0.90775 0.94541 0.95742 0.93013 0.96144 0.99420 0.92769 0.90512 0.90782 0.90651 0.94966 0.83638 0.94061 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 37.16 0.34 -2.00 16 2 C -0.11 -2.12 2.41 -90.62 -0.22 -2.33 16 3 C -0.12 -2.42 8.50 37.16 0.32 -2.11 16 4 C 0.07 1.38 3.00 -3.83 -0.01 1.37 16 5 N -0.51 -10.33 3.65 -227.94 -0.83 -11.16 16 6 C 0.16 3.83 3.15 -4.98 -0.02 3.82 16 7 C -0.50 -13.71 7.53 -34.44 -0.26 -13.97 16 8 H 0.10 2.82 5.25 -52.49 -0.28 2.55 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 11 Si 0.87 21.20 27.37 -169.99 -4.65 16.55 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.36 6.70 56.52 0.38 -5.98 16 15 C 0.06 0.99 1.97 -67.59 -0.13 0.85 16 16 H 0.08 1.47 7.79 -51.93 -0.40 1.06 16 17 C -0.15 -2.19 4.75 -26.65 -0.13 -2.31 16 18 C 0.06 0.67 6.55 -3.84 -0.03 0.65 16 19 N -0.69 -7.40 6.84 -113.83 -0.78 -8.18 16 20 C 0.03 0.40 6.29 -3.83 -0.02 0.38 16 21 C 0.11 1.61 3.37 -26.65 -0.09 1.52 16 22 H 0.09 1.33 6.21 -51.93 -0.32 1.01 16 23 F -0.20 -3.58 17.04 2.25 0.04 -3.54 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.12 2.81 5.13 -51.93 -0.27 2.54 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.46 6.94 -51.93 -0.36 0.10 16 32 H 0.05 0.88 5.89 -51.93 -0.31 0.57 16 33 H 0.02 0.49 7.09 -51.93 -0.37 0.13 16 34 H -0.01 -0.28 6.50 -51.93 -0.34 -0.62 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.14 6.60 -51.93 -0.34 0.79 16 37 H 0.07 1.15 7.41 -51.93 -0.39 0.76 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.35 2.85 8.90 -39.29 -0.35 2.50 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -29.11 314.02 -8.10 -37.20 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.03 Total: 2.87 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.34 Total: -12.33 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.84 Total: -45.48 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.65 Total: 16.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.11 -8.10 -37.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691521457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds