Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47307 * 2 1 4 4 H 1.08999 * 109.46661 * 318.30788 * 3 2 1 5 5 C 1.50696 * 109.47223 * 198.30900 * 3 2 1 6 6 H 1.08001 * 119.99973 * 245.91285 * 5 3 2 7 7 C 1.37883 * 120.00217 * 65.91647 * 5 3 2 8 8 N 1.31518 * 119.99646 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46944 * 60.00082 * 9 7 5 11 11 H 1.48496 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47399 * 299.99948 * 9 7 5 13 13 N 1.46900 * 109.47059 * 78.30365 * 3 2 1 14 14 C 1.47012 * 111.00054 * 323.26981 * 13 3 2 15 15 C 1.53102 * 109.25380 * 177.60671 * 14 13 3 16 16 O 1.43008 * 109.25917 * 56.84671 * 15 14 13 17 17 C 1.43014 * 113.74325 * 301.32664 * 16 15 14 18 18 C 1.47011 * 110.99757 * 199.63008 * 13 3 2 19 19 C 1.52996 * 109.51162 * 302.32889 * 18 13 3 20 20 N 1.46905 * 109.46993 * 297.83402 * 19 18 13 21 21 C 1.52995 * 109.54308 * 62.44398 * 18 13 3 22 22 O 1.42899 * 109.47434 * 179.89016 * 21 18 13 23 23 H 1.09000 * 109.46856 * 168.93271 * 1 2 3 24 24 H 1.09000 * 109.47041 * 288.93871 * 1 2 3 25 25 H 1.09005 * 109.47143 * 48.94026 * 1 2 3 26 26 H 1.09003 * 109.47553 * 239.99870 * 2 1 3 27 27 H 1.08998 * 109.47096 * 119.99929 * 2 1 3 28 28 H 0.96998 * 119.99428 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.50936 * 57.67432 * 14 13 3 30 30 H 1.09000 * 109.50462 * 297.53864 * 14 13 3 31 31 H 1.09004 * 109.50466 * 296.90545 * 15 14 13 32 32 H 1.09000 * 109.50098 * 176.78501 * 15 14 13 33 33 H 1.09003 * 109.50575 * 298.74181 * 17 16 15 34 34 H 1.08994 * 109.54522 * 178.62475 * 17 16 15 35 35 H 1.08998 * 109.47341 * 177.82667 * 19 18 13 36 36 H 1.09003 * 109.46652 * 57.82809 * 19 18 13 37 37 H 1.00907 * 110.99510 * 173.48666 * 20 19 18 38 38 H 1.00901 * 110.99446 * 297.43234 * 20 19 18 39 39 H 1.09001 * 109.47230 * 299.88785 * 21 18 13 40 40 H 1.08997 * 109.47270 * 59.88743 * 21 18 13 41 41 H 0.96701 * 114.00230 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4376 2.0408 -0.6835 5 6 3.4792 1.4665 -0.4463 6 1 4.2539 1.7652 0.2444 7 6 3.8070 1.1071 -1.7365 8 7 2.8637 0.7429 -2.5774 9 14 5.5908 1.1375 -2.2899 10 1 6.3867 0.2103 -1.4460 11 1 5.6760 0.7104 -3.7096 12 1 6.1280 2.5152 -2.1539 13 7 1.9386 1.9978 1.3562 14 6 0.7286 1.5119 2.0353 15 6 0.6935 2.0659 3.4621 16 8 0.7516 3.4940 3.4152 17 6 1.9176 4.0017 2.7611 18 6 1.9652 3.4674 1.3272 19 6 3.2512 3.9418 0.6476 20 7 4.4120 3.4901 1.4265 21 6 0.7545 3.9858 0.5485 22 8 0.7805 5.4144 0.5233 23 1 -0.3633 -1.0086 -0.1973 24 1 -0.3633 0.3335 0.9720 25 1 -0.3634 0.6750 -0.7749 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0943 0.4904 -3.4851 29 1 0.7422 0.4224 2.0681 30 1 -0.1540 1.8494 1.4920 31 1 1.5479 1.6849 4.0216 32 1 -0.2300 1.7549 3.9506 33 1 2.8077 3.6771 3.3002 34 1 1.8802 5.0909 2.7426 35 1 3.2524 5.0304 0.5918 36 1 3.3049 3.5264 -0.3587 37 1 5.2738 3.6982 0.9447 38 1 4.4072 3.8954 2.3505 39 1 0.7881 3.6039 -0.4719 40 1 -0.1613 3.6476 1.0331 41 1 0.0403 5.8129 0.0453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693910369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -50.294500 kcal Electronic energy + Delta-G solvation = -22288.276984 eV Core-core repulsion = 19204.881122 eV Total energy + Delta-G solvation = -3083.395862 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02460 -36.43113 -36.02934 -34.26643 -32.58750 -31.02819 -29.95003 -28.15031 -26.10658 -24.97173 -23.88877 -22.78040 -21.55056 -19.88075 -17.92598 -17.18764 -16.54069 -15.83004 -15.73166 -15.18895 -14.68262 -14.40936 -14.22982 -14.04611 -13.62059 -13.29306 -12.84803 -12.60198 -12.29468 -11.89761 -11.69099 -11.55713 -11.18995 -10.97478 -10.81777 -10.65136 -10.55771 -10.49391 -10.23642 -9.88450 -9.69448 -9.58473 -9.21341 -8.89603 -8.71912 -8.25472 -7.63912 -7.06690 -5.90693 -3.86059 3.36672 3.42330 3.45659 4.29284 4.47123 4.65376 4.87096 5.24354 5.37959 5.45499 5.53355 5.60622 5.67560 5.73614 5.84939 6.05014 6.08534 6.16004 6.19129 6.20379 6.35462 6.36411 6.43644 6.45671 6.61150 6.84760 7.05800 7.11762 7.17974 7.45444 7.57893 7.66337 7.94818 7.96100 8.09583 8.24008 8.29178 8.33970 8.67747 9.35503 9.72799 11.17226 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.009658 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.934858 B = 2898.409871 C = 3430.191064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.115 4.115 3 C 0.211 3.789 4 H 0.010 0.990 5 C -0.487 4.487 6 H 0.103 0.897 7 C 0.047 3.953 8 N -0.902 5.902 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.280 1.280 13 N -0.491 5.491 14 C 0.002 3.998 15 C 0.059 3.941 16 O -0.392 6.392 17 C 0.077 3.923 18 C 0.101 3.899 19 C 0.074 3.926 20 N -0.818 5.818 21 C 0.049 3.951 22 O -0.570 6.570 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.256 0.744 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.012 0.988 36 H 0.118 0.882 37 H 0.331 0.669 38 H 0.318 0.682 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 4.787 7.266 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.153 4.153 3 C 0.106 3.894 4 H 0.028 0.972 5 C -0.526 4.526 6 H 0.121 0.879 7 C -0.153 4.153 8 N -0.543 5.543 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.206 1.206 13 N -0.217 5.217 14 C -0.126 4.126 15 C -0.018 4.018 16 O -0.310 6.310 17 C -0.001 4.001 18 C 0.010 3.990 19 C -0.056 4.056 20 N -0.346 5.346 21 C -0.031 4.031 22 O -0.374 6.374 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.030 0.970 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.298 3.844 7.673 9.194 hybrid contribution 0.012 0.989 -1.486 1.785 sum -3.286 4.833 6.187 8.511 Atomic orbital electron populations 1.22601 0.99449 0.99848 1.01176 1.21685 0.91680 1.00183 1.01801 1.19504 0.97245 0.90597 0.82065 0.97229 1.21834 0.93265 1.41356 0.96171 0.87902 1.25017 0.96742 0.96415 0.97106 1.69961 1.31843 1.46913 1.05562 0.86646 0.85907 0.78225 0.77008 1.20434 1.22073 1.20640 1.62779 1.33375 1.03148 1.22435 1.23403 0.93348 1.01398 0.94492 1.22753 1.01150 0.81084 0.96843 1.87884 1.43878 1.20817 1.78448 1.22666 0.87803 0.98045 0.91546 1.21409 0.93716 0.89658 0.94259 1.21978 0.88226 0.94502 1.00915 1.58575 1.04243 1.66846 1.04966 1.22963 0.99343 0.80343 1.00464 1.86424 1.51614 1.20250 1.79094 0.94909 0.92249 0.93849 0.89469 0.94085 0.93403 0.88766 0.94622 0.92758 0.89819 0.92427 0.89362 0.96964 0.86467 0.85704 0.87023 0.92561 0.93851 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.89 37.16 0.33 -3.03 16 2 C -0.12 -2.61 4.84 -26.73 -0.13 -2.74 16 3 C 0.21 4.93 1.28 -68.86 -0.09 4.84 16 4 H 0.01 0.26 5.38 -51.93 -0.28 -0.02 16 5 C -0.49 -12.41 5.64 -34.44 -0.19 -12.60 16 6 H 0.10 2.62 5.21 -52.49 -0.27 2.34 16 7 C 0.05 1.23 5.19 -17.82 -0.09 1.14 16 8 N -0.90 -25.01 11.85 55.43 0.66 -24.36 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.49 -9.96 4.29 -212.17 -0.91 -10.87 16 14 C 0.00 0.03 3.28 -3.71 -0.01 0.02 16 15 C 0.06 0.93 7.01 37.21 0.26 1.20 16 16 O -0.39 -6.86 10.28 -35.23 -0.36 -7.22 16 17 C 0.08 1.32 5.29 37.21 0.20 1.52 16 18 C 0.10 1.91 0.28 -131.49 -0.04 1.88 16 19 C 0.07 1.45 4.82 -3.82 -0.02 1.43 16 20 N -0.82 -14.59 7.25 -10.37 -0.08 -14.67 16 21 C 0.05 0.90 5.18 37.16 0.19 1.09 16 22 O -0.57 -9.36 12.23 -35.23 -0.43 -9.80 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.02 3.95 -51.93 -0.20 0.82 16 25 H 0.04 0.88 7.90 -51.93 -0.41 0.47 16 26 H 0.09 2.26 6.36 -51.93 -0.33 1.93 16 27 H 0.04 0.91 7.23 -51.93 -0.38 0.53 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.09 1.67 4.94 -51.93 -0.26 1.41 16 30 H 0.04 0.65 4.95 -51.93 -0.26 0.39 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.97 6.53 -51.93 -0.34 0.63 16 34 H 0.09 1.49 7.60 -51.93 -0.39 1.09 16 35 H 0.01 0.23 7.62 -51.93 -0.40 -0.16 16 36 H 0.12 2.72 5.28 -51.93 -0.27 2.44 16 37 H 0.33 5.56 9.08 -39.29 -0.36 5.20 16 38 H 0.32 4.96 7.20 -39.29 -0.28 4.67 16 39 H 0.06 1.16 6.13 -51.93 -0.32 0.84 16 40 H 0.04 0.79 6.07 -51.93 -0.32 0.48 16 41 H 0.37 4.38 9.12 45.56 0.42 4.80 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -28.52 291.73 -6.39 -34.91 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -5.05 Total: 16.83 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 0.41 Total: -5.26 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.33 Total: -49.89 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.79 Total: -17.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.52 -6.39 -34.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693910369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.389 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds