Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47307 * 2 1 4 4 H 1.08999 * 109.46661 * 318.30788 * 3 2 1 5 5 C 1.50696 * 109.47223 * 198.30900 * 3 2 1 6 6 H 1.08001 * 119.99973 * 245.91285 * 5 3 2 7 7 C 1.37883 * 120.00217 * 65.91647 * 5 3 2 8 8 N 1.31518 * 119.99646 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46944 * 60.00082 * 9 7 5 11 11 H 1.48496 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47399 * 299.99948 * 9 7 5 13 13 N 1.46900 * 109.47059 * 78.30365 * 3 2 1 14 14 C 1.47012 * 111.00054 * 323.26981 * 13 3 2 15 15 C 1.53102 * 109.25380 * 177.60671 * 14 13 3 16 16 O 1.43008 * 109.25917 * 56.84671 * 15 14 13 17 17 C 1.43014 * 113.74325 * 301.32664 * 16 15 14 18 18 C 1.47011 * 110.99757 * 199.63008 * 13 3 2 19 19 C 1.52996 * 109.51162 * 302.32889 * 18 13 3 20 20 N 1.46905 * 109.46993 * 297.83402 * 19 18 13 21 21 C 1.52995 * 109.54308 * 62.44398 * 18 13 3 22 22 O 1.42899 * 109.47434 * 179.89016 * 21 18 13 23 23 H 1.09000 * 109.46856 * 168.93271 * 1 2 3 24 24 H 1.09000 * 109.47041 * 288.93871 * 1 2 3 25 25 H 1.09005 * 109.47143 * 48.94026 * 1 2 3 26 26 H 1.09003 * 109.47553 * 239.99870 * 2 1 3 27 27 H 1.08998 * 109.47096 * 119.99929 * 2 1 3 28 28 H 0.96998 * 119.99428 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.50936 * 57.67432 * 14 13 3 30 30 H 1.09000 * 109.50462 * 297.53864 * 14 13 3 31 31 H 1.09004 * 109.50466 * 296.90545 * 15 14 13 32 32 H 1.09000 * 109.50098 * 176.78501 * 15 14 13 33 33 H 1.09003 * 109.50575 * 298.74181 * 17 16 15 34 34 H 1.08994 * 109.54522 * 178.62475 * 17 16 15 35 35 H 1.08998 * 109.47341 * 177.82667 * 19 18 13 36 36 H 1.09003 * 109.46652 * 57.82809 * 19 18 13 37 37 H 1.00907 * 110.99510 * 173.48666 * 20 19 18 38 38 H 1.00901 * 110.99446 * 297.43234 * 20 19 18 39 39 H 1.09001 * 109.47230 * 299.88785 * 21 18 13 40 40 H 1.08997 * 109.47270 * 59.88743 * 21 18 13 41 41 H 0.96701 * 114.00230 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4376 2.0408 -0.6835 5 6 3.4792 1.4665 -0.4463 6 1 4.2539 1.7652 0.2444 7 6 3.8070 1.1071 -1.7365 8 7 2.8637 0.7429 -2.5774 9 14 5.5908 1.1375 -2.2899 10 1 6.3867 0.2103 -1.4460 11 1 5.6760 0.7104 -3.7096 12 1 6.1280 2.5152 -2.1539 13 7 1.9386 1.9978 1.3562 14 6 0.7286 1.5119 2.0353 15 6 0.6935 2.0659 3.4621 16 8 0.7516 3.4940 3.4152 17 6 1.9176 4.0017 2.7611 18 6 1.9652 3.4674 1.3272 19 6 3.2512 3.9418 0.6476 20 7 4.4120 3.4901 1.4265 21 6 0.7545 3.9858 0.5485 22 8 0.7805 5.4144 0.5233 23 1 -0.3633 -1.0086 -0.1973 24 1 -0.3633 0.3335 0.9720 25 1 -0.3634 0.6750 -0.7749 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0943 0.4904 -3.4851 29 1 0.7422 0.4224 2.0681 30 1 -0.1540 1.8494 1.4920 31 1 1.5479 1.6849 4.0216 32 1 -0.2300 1.7549 3.9506 33 1 2.8077 3.6771 3.3002 34 1 1.8802 5.0909 2.7426 35 1 3.2524 5.0304 0.5918 36 1 3.3049 3.5264 -0.3587 37 1 5.2738 3.6982 0.9447 38 1 4.4072 3.8954 2.3505 39 1 0.7881 3.6039 -0.4719 40 1 -0.1613 3.6476 1.0331 41 1 0.0403 5.8129 0.0453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693910369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -75.154289 kcal Electronic energy + Delta-G solvation = -22289.354985 eV Core-core repulsion = 19204.881122 eV Total energy + Delta-G solvation = -3084.473863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51840 -37.86121 -37.52978 -35.76056 -34.46043 -32.65735 -31.41056 -29.85201 -27.62817 -26.56406 -25.41318 -24.52051 -23.01646 -21.63898 -19.42807 -18.60372 -18.38287 -17.40185 -17.17206 -16.68396 -16.26712 -15.99894 -15.72868 -15.65228 -15.07919 -14.81912 -14.56697 -14.09163 -13.83531 -13.62887 -13.26431 -13.14985 -12.74416 -12.68763 -12.48900 -12.45212 -12.13561 -12.02964 -11.90451 -11.63620 -11.33212 -11.13558 -10.84131 -10.64329 -10.28934 -10.17743 -9.11324 -8.71721 -7.92429 -5.91161 1.46858 1.49177 1.54939 2.53937 2.97689 3.20097 3.35020 3.45869 3.79403 4.01017 4.13486 4.23883 4.25896 4.37741 4.47201 4.49775 4.58338 4.60686 4.70063 4.76519 4.83283 4.86847 4.94330 5.04191 5.13930 5.18902 5.32676 5.41325 5.48750 5.66729 5.84565 6.05014 6.25410 6.46625 6.51788 6.63959 6.80093 6.85650 6.91265 7.34371 7.70092 9.14135 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.009658 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.934858 B = 2898.409871 C = 3430.191064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C 0.219 3.781 4 H -0.020 1.020 5 C -0.482 4.482 6 H 0.104 0.896 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.302 1.302 12 H -0.271 1.271 13 N -0.497 5.497 14 C -0.001 4.001 15 C 0.062 3.938 16 O -0.397 6.397 17 C 0.085 3.915 18 C 0.096 3.904 19 C 0.084 3.916 20 N -0.823 5.823 21 C 0.062 3.938 22 O -0.573 6.573 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.250 0.750 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.337 0.663 38 H 0.334 0.666 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 5.362 9.360 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C 0.113 3.887 4 H -0.003 1.003 5 C -0.521 4.521 6 H 0.121 0.879 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.229 1.229 12 H -0.197 1.197 13 N -0.223 5.223 14 C -0.129 4.129 15 C -0.015 4.015 16 O -0.316 6.316 17 C 0.008 3.992 18 C 0.005 3.995 19 C -0.047 4.047 20 N -0.354 5.354 21 C -0.019 4.019 22 O -0.380 6.380 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.037 0.963 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.525 4.443 9.791 11.315 hybrid contribution 0.054 0.866 -2.096 2.268 sum -3.471 5.309 7.695 9.973 Atomic orbital electron populations 1.22477 0.96874 1.00476 1.02079 1.21527 0.94016 0.99297 1.00061 1.19236 0.95579 0.90616 0.83275 1.00297 1.22131 0.94509 1.39495 0.95939 0.87865 1.25623 0.99605 0.96930 0.97557 1.70098 1.33252 1.48711 1.05466 0.85818 0.82462 0.78434 0.76006 1.20345 1.22861 1.19675 1.62666 1.35045 1.04153 1.20393 1.23474 0.92085 1.01694 0.95618 1.22877 1.03111 0.80146 0.95345 1.87887 1.43809 1.21713 1.78164 1.22583 0.88209 0.98368 0.90035 1.21486 0.93466 0.88909 0.95644 1.21691 0.89371 0.94554 0.99070 1.58473 1.04000 1.67156 1.05757 1.22678 0.99257 0.81344 0.98578 1.86369 1.53108 1.18981 1.79500 0.93439 0.89630 0.95570 0.93153 0.93713 0.94112 0.88469 0.94870 0.92309 0.86571 0.91773 0.88665 0.96314 0.90496 0.85063 0.85235 0.95623 0.93502 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 8.89 71.98 0.64 -5.52 16 2 C -0.11 -5.04 4.84 30.60 0.15 -4.89 16 3 C 0.22 10.35 1.28 44.17 0.06 10.41 16 4 H -0.02 -1.09 5.38 -2.39 -0.01 -1.10 16 5 C -0.48 -24.84 5.64 25.60 0.14 -24.70 16 6 H 0.10 5.24 5.21 -2.91 -0.02 5.22 16 7 C 0.00 -0.07 5.19 84.66 0.44 0.37 16 8 N -0.93 -53.53 11.85 21.45 0.25 -53.28 16 9 Si 0.94 43.91 29.54 68.60 2.03 45.94 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.50 -19.63 4.29 -825.17 -3.54 -23.17 16 14 C 0.00 -0.03 3.28 86.32 0.28 0.25 16 15 C 0.06 1.74 7.01 72.02 0.50 2.25 16 16 O -0.40 -12.57 10.28 -148.98 -1.53 -14.10 16 17 C 0.09 2.72 5.29 72.02 0.38 3.10 16 18 C 0.10 3.53 0.28 3.54 0.00 3.53 16 19 C 0.08 3.23 4.82 86.30 0.42 3.65 16 20 N -0.82 -28.21 7.25 -186.71 -1.35 -29.56 16 21 C 0.06 2.23 5.18 71.98 0.37 2.60 16 22 O -0.57 -17.93 12.23 -148.98 -1.82 -19.75 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.09 2.78 3.95 -2.39 -0.01 2.78 16 25 H 0.03 1.06 7.90 -2.38 -0.02 1.04 16 26 H 0.05 2.67 6.36 -2.39 -0.02 2.66 16 27 H 0.04 1.96 7.23 -2.39 -0.02 1.94 16 28 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.10 3.19 4.94 -2.38 -0.01 3.18 16 30 H 0.03 1.14 4.95 -2.39 -0.01 1.13 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.55 16 33 H 0.06 1.97 6.53 -2.39 -0.02 1.95 16 34 H 0.10 2.93 7.60 -2.39 -0.02 2.91 16 35 H 0.02 0.69 7.62 -2.39 -0.02 0.67 16 36 H 0.08 3.62 5.28 -2.39 -0.01 3.61 16 37 H 0.34 10.87 9.08 -89.69 -0.81 10.06 16 38 H 0.33 9.65 7.20 -89.69 -0.65 9.00 16 39 H 0.03 1.08 6.13 -2.39 -0.01 1.07 16 40 H 0.05 1.65 6.07 -2.39 -0.01 1.63 16 41 H 0.39 8.59 9.12 -74.06 -0.68 7.91 16 Total: -1.00 -61.54 291.73 -3.63 -65.17 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -1.05 Total: 37.71 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.39 Total: -8.96 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.64 Total: -106.01 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -3.35 Total: -33.85 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.54 -3.63 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693910369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.982 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds