Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47200 * 270.00160 * 3 2 1 5 5 H 1.48500 * 109.46935 * 30.00079 * 3 2 1 6 6 H 1.48501 * 109.46906 * 149.99980 * 3 2 1 7 7 C 1.37882 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00401 * 180.27475 * 7 2 1 10 10 C 1.53001 * 109.47134 * 179.72409 * 9 7 2 11 11 C 1.53000 * 109.46572 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46670 * 185.33956 * 11 10 9 13 13 C 1.47014 * 110.99930 * 294.68102 * 12 11 10 14 14 C 1.53099 * 109.26074 * 177.61105 * 13 12 11 15 15 O 1.43009 * 109.25967 * 56.84787 * 14 13 12 16 16 C 1.43020 * 113.74008 * 301.33613 * 15 14 13 17 17 C 1.47017 * 110.99975 * 171.05406 * 12 11 10 18 18 C 1.52990 * 109.51134 * 62.44980 * 17 12 11 19 19 N 1.46901 * 109.47335 * 173.76275 * 18 17 12 20 20 C 1.52999 * 109.50245 * 302.31934 * 17 12 11 21 21 O 1.42900 * 109.47360 * 185.72006 * 20 17 12 22 22 H 0.97004 * 119.99406 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46803 * 299.72832 * 9 7 2 24 24 H 1.09000 * 109.46872 * 59.72173 * 9 7 2 25 25 H 1.08997 * 109.46884 * 299.99827 * 10 9 7 26 26 H 1.08992 * 109.46705 * 60.00509 * 10 9 7 27 27 H 1.08995 * 109.47486 * 305.33521 * 11 10 9 28 28 H 1.08995 * 109.47508 * 65.33904 * 11 10 9 29 29 H 1.09002 * 109.51039 * 297.54761 * 13 12 11 30 30 H 1.09002 * 109.50757 * 57.67740 * 13 12 11 31 31 H 1.09000 * 109.50754 * 176.78516 * 14 13 12 32 32 H 1.09007 * 109.50185 * 296.91168 * 14 13 12 33 33 H 1.08998 * 109.50756 * 178.60512 * 16 15 14 34 34 H 1.09006 * 109.50210 * 298.68695 * 16 15 14 35 35 H 1.09000 * 109.47790 * 293.76795 * 18 17 12 36 36 H 1.09002 * 109.46919 * 53.76378 * 18 17 12 37 37 H 1.00901 * 110.99822 * 69.00069 * 19 18 17 38 38 H 1.00902 * 111.00031 * 192.96358 * 19 18 17 39 39 H 1.09001 * 109.47470 * 305.72134 * 20 17 12 40 40 H 1.09002 * 109.47260 * 65.72402 * 20 17 12 41 41 H 0.96698 * 114.00114 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0068 10 6 4.0214 -2.6367 0.0130 11 6 5.5514 -2.6367 0.0200 12 7 6.0415 -4.0161 -0.1029 13 6 5.6714 -4.8136 1.0753 14 6 6.1484 -6.2552 0.8795 15 8 7.5592 -6.2575 0.6456 16 6 7.9551 -5.4907 -0.4948 17 6 7.4964 -4.0415 -0.3128 18 6 8.1987 -3.4320 0.9021 19 7 9.6519 -3.5924 0.7591 20 6 7.8460 -3.2340 -1.5645 21 8 9.2410 -3.3684 -1.8439 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6829 -0.8831 24 1 3.8711 -0.6778 0.8968 25 1 3.6543 -3.1479 0.9030 26 1 3.6618 -3.1530 -0.8770 27 1 5.9186 -2.0447 -0.8182 28 1 5.9105 -2.2054 0.9544 29 1 6.1425 -4.3918 1.9632 30 1 4.5882 -4.8021 1.1971 31 1 5.9268 -6.8367 1.7744 32 1 5.6367 -6.6947 0.0232 33 1 9.0402 -5.5193 -0.5939 34 1 7.4966 -5.9085 -1.3912 35 1 7.9550 -2.3717 0.9687 36 1 7.8645 -3.9391 1.8072 37 1 10.0080 -3.0131 0.0137 38 1 10.1248 -3.3946 1.6283 39 1 7.2685 -3.6068 -2.4105 40 1 7.6086 -2.1834 -1.3972 41 1 9.5340 -2.8818 -2.6264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693911853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -85.757850 kcal Electronic energy + Delta-G solvation = -20777.969384 eV Core-core repulsion = 17693.035716 eV Total energy + Delta-G solvation = -3084.933668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46409 -37.11502 -36.18875 -34.42230 -33.35487 -31.58521 -31.07878 -28.33406 -26.49627 -25.57476 -24.77301 -22.39950 -22.20704 -20.07230 -18.61425 -17.80929 -16.89528 -16.56124 -16.09739 -15.66650 -15.44944 -14.86412 -14.72654 -14.33214 -14.15128 -13.65093 -13.50109 -13.40181 -12.95114 -12.68146 -12.47603 -12.13180 -11.98082 -11.43995 -11.37470 -11.23562 -10.94639 -10.65852 -10.29350 -10.10498 -9.95324 -9.73419 -9.70253 -9.37866 -9.19608 -8.72943 -8.56671 -8.14246 -6.06938 -4.04831 3.26703 3.34362 3.37099 3.52817 3.94843 4.35520 4.41840 4.56128 4.76628 4.93239 5.01727 5.08117 5.22239 5.26817 5.29575 5.35996 5.43746 5.55102 5.66005 5.69958 5.74537 5.77472 5.88035 6.03861 6.08039 6.18340 6.45059 6.51323 6.83849 7.00875 7.09823 7.22152 7.26211 7.30086 7.40549 7.42292 7.58767 7.76892 8.51888 8.98523 9.55566 11.06642 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.005044 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.728470 B = 5549.298442 C = 6124.336020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.097 4.097 11 C 0.046 3.954 12 N -0.521 5.521 13 C 0.015 3.985 14 C 0.060 3.940 15 O -0.381 6.381 16 C 0.094 3.906 17 C 0.081 3.919 18 C 0.046 3.954 19 N -0.834 5.834 20 C 0.086 3.914 21 O -0.562 6.562 22 H 0.263 0.737 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.349 0.651 38 H 0.332 0.668 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.665 -7.788 -0.937 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.135 4.135 11 C -0.081 4.081 12 N -0.247 5.247 13 C -0.113 4.113 14 C -0.017 4.017 15 O -0.299 6.299 16 C 0.017 3.983 17 C -0.010 4.010 18 C -0.087 4.087 19 N -0.368 5.368 20 C 0.008 3.992 21 O -0.366 6.366 22 H 0.073 0.927 23 H 0.028 0.972 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 18.220 -9.113 -0.889 20.391 hybrid contribution 0.347 3.044 0.312 3.079 sum 18.567 -6.069 -0.577 19.542 Atomic orbital electron populations 1.69916 1.06284 1.26852 1.51205 1.25036 0.94720 0.99123 0.94628 0.86783 0.80300 0.83737 0.78460 1.20303 1.21369 1.19191 1.21129 0.89431 0.94468 1.50657 0.90994 1.19543 0.97258 0.92210 0.95997 1.21478 0.90619 0.99701 1.01687 1.22466 0.98283 0.87423 0.99967 1.62494 1.09573 1.13491 1.39123 1.22879 1.02464 0.94327 0.91646 1.22682 0.82223 0.95284 1.01531 1.87999 1.22336 1.71113 1.48486 1.22491 1.01393 0.87024 0.87369 1.21621 0.87763 0.97665 0.93975 1.22244 0.89689 0.97670 0.99127 1.58605 1.03227 1.64478 1.10444 1.22145 0.81950 0.98315 0.96804 1.86409 1.24024 1.75526 1.50611 0.92740 0.97177 0.96943 0.92826 0.91803 0.90994 0.95075 0.93851 0.88636 0.88789 0.92426 0.86602 0.93643 0.95862 0.90774 0.83450 0.85684 0.92332 0.93370 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 10 C -0.10 -1.88 4.92 -26.73 -0.13 -2.02 16 11 C 0.05 0.73 4.13 -3.82 -0.02 0.71 16 12 N -0.52 -7.45 4.50 -218.68 -0.98 -8.43 16 13 C 0.01 0.20 5.04 -3.71 -0.02 0.18 16 14 C 0.06 0.74 7.01 37.21 0.26 1.00 16 15 O -0.38 -5.36 10.39 -35.23 -0.37 -5.73 16 16 C 0.09 1.25 5.26 37.21 0.20 1.44 16 17 C 0.08 1.03 0.43 -131.49 -0.06 0.98 16 18 C 0.05 0.58 4.81 -3.83 -0.02 0.56 16 19 N -0.83 -9.25 8.10 -10.37 -0.08 -9.33 16 20 C 0.09 0.97 5.43 37.16 0.20 1.17 16 21 O -0.56 -5.17 10.02 -35.23 -0.35 -5.52 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.01 0.23 7.58 -51.93 -0.39 -0.16 16 24 H 0.01 0.29 7.19 -51.93 -0.37 -0.08 16 25 H 0.05 1.04 6.75 -51.93 -0.35 0.69 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.12 5.93 -51.93 -0.31 0.81 16 28 H 0.03 0.50 6.99 -51.93 -0.36 0.14 16 29 H 0.04 0.59 6.26 -51.93 -0.32 0.27 16 30 H 0.10 1.32 6.46 -51.93 -0.34 0.98 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.12 1.57 6.87 -51.93 -0.36 1.22 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.31 7.01 -51.93 -0.36 -0.06 16 36 H 0.07 1.02 5.93 -51.93 -0.31 0.72 16 37 H 0.35 3.64 6.62 -39.29 -0.26 3.38 16 38 H 0.33 3.22 9.08 -39.29 -0.36 2.86 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.55 6.51 -51.93 -0.34 0.21 16 41 H 0.38 1.87 9.12 45.56 0.42 2.29 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -31.70 306.68 -6.90 -38.60 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.72 Total: 5.57 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.13 Total: -9.65 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.29 Total: -44.89 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.72 Total: -11.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.70 -6.90 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693911853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.158 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds