Wall clock time and date at job start Mon Mar 30 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47200 * 270.00160 * 3 2 1 5 5 H 1.48500 * 109.46935 * 30.00079 * 3 2 1 6 6 H 1.48501 * 109.46906 * 149.99980 * 3 2 1 7 7 C 1.37882 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00401 * 180.27475 * 7 2 1 10 10 C 1.53001 * 109.47134 * 179.72409 * 9 7 2 11 11 C 1.53000 * 109.46572 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46670 * 185.33956 * 11 10 9 13 13 C 1.47014 * 110.99930 * 294.68102 * 12 11 10 14 14 C 1.53099 * 109.26074 * 177.61105 * 13 12 11 15 15 O 1.43009 * 109.25967 * 56.84787 * 14 13 12 16 16 C 1.43020 * 113.74008 * 301.33613 * 15 14 13 17 17 C 1.47017 * 110.99975 * 171.05406 * 12 11 10 18 18 C 1.52990 * 109.51134 * 62.44980 * 17 12 11 19 19 N 1.46901 * 109.47335 * 173.76275 * 18 17 12 20 20 C 1.52999 * 109.50245 * 302.31934 * 17 12 11 21 21 O 1.42900 * 109.47360 * 185.72006 * 20 17 12 22 22 H 0.97004 * 119.99406 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46803 * 299.72832 * 9 7 2 24 24 H 1.09000 * 109.46872 * 59.72173 * 9 7 2 25 25 H 1.08997 * 109.46884 * 299.99827 * 10 9 7 26 26 H 1.08992 * 109.46705 * 60.00509 * 10 9 7 27 27 H 1.08995 * 109.47486 * 305.33521 * 11 10 9 28 28 H 1.08995 * 109.47508 * 65.33904 * 11 10 9 29 29 H 1.09002 * 109.51039 * 297.54761 * 13 12 11 30 30 H 1.09002 * 109.50757 * 57.67740 * 13 12 11 31 31 H 1.09000 * 109.50754 * 176.78516 * 14 13 12 32 32 H 1.09007 * 109.50185 * 296.91168 * 14 13 12 33 33 H 1.08998 * 109.50756 * 178.60512 * 16 15 14 34 34 H 1.09006 * 109.50210 * 298.68695 * 16 15 14 35 35 H 1.09000 * 109.47790 * 293.76795 * 18 17 12 36 36 H 1.09002 * 109.46919 * 53.76378 * 18 17 12 37 37 H 1.00901 * 110.99822 * 69.00069 * 19 18 17 38 38 H 1.00902 * 111.00031 * 192.96358 * 19 18 17 39 39 H 1.09001 * 109.47470 * 305.72134 * 20 17 12 40 40 H 1.09002 * 109.47260 * 65.72402 * 20 17 12 41 41 H 0.96698 * 114.00114 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0068 10 6 4.0214 -2.6367 0.0130 11 6 5.5514 -2.6367 0.0200 12 7 6.0415 -4.0161 -0.1029 13 6 5.6714 -4.8136 1.0753 14 6 6.1484 -6.2552 0.8795 15 8 7.5592 -6.2575 0.6456 16 6 7.9551 -5.4907 -0.4948 17 6 7.4964 -4.0415 -0.3128 18 6 8.1987 -3.4320 0.9021 19 7 9.6519 -3.5924 0.7591 20 6 7.8460 -3.2340 -1.5645 21 8 9.2410 -3.3684 -1.8439 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6829 -0.8831 24 1 3.8711 -0.6778 0.8968 25 1 3.6543 -3.1479 0.9030 26 1 3.6618 -3.1530 -0.8770 27 1 5.9186 -2.0447 -0.8182 28 1 5.9105 -2.2054 0.9544 29 1 6.1425 -4.3918 1.9632 30 1 4.5882 -4.8021 1.1971 31 1 5.9268 -6.8367 1.7744 32 1 5.6367 -6.6947 0.0232 33 1 9.0402 -5.5193 -0.5939 34 1 7.4966 -5.9085 -1.3912 35 1 7.9550 -2.3717 0.9687 36 1 7.8645 -3.9391 1.8072 37 1 10.0080 -3.0131 0.0137 38 1 10.1248 -3.3946 1.6283 39 1 7.2685 -3.6068 -2.4105 40 1 7.6086 -2.1834 -1.3972 41 1 9.5340 -2.8818 -2.6264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693911853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:57 Heat of formation + Delta-G solvation = -113.294230 kcal Electronic energy + Delta-G solvation = -20779.163451 eV Core-core repulsion = 17693.035716 eV Total energy + Delta-G solvation = -3086.127735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50745 -37.99983 -37.36899 -35.71555 -34.89625 -33.38709 -32.06315 -29.82538 -27.55564 -27.01345 -25.75642 -23.85585 -23.41105 -21.74337 -19.65726 -18.89183 -18.66784 -17.67219 -17.14773 -16.69778 -16.47528 -16.30376 -16.02801 -15.80819 -15.14197 -14.88772 -14.75992 -14.68964 -14.36007 -13.92048 -13.79879 -13.52672 -13.24968 -12.97748 -12.75957 -12.40316 -12.26751 -12.12818 -11.78772 -11.59616 -11.42160 -11.26883 -11.22620 -10.86584 -10.76912 -10.45226 -9.67782 -9.20522 -8.30222 -6.34466 1.34184 1.36344 1.47909 2.34926 2.52811 2.95948 3.05141 3.41860 3.63061 3.76519 3.94207 4.04413 4.08166 4.13357 4.25349 4.31501 4.42254 4.49141 4.51079 4.58348 4.67027 4.72333 4.81592 4.82247 4.87540 4.90310 5.03679 5.07062 5.20724 5.48871 5.56587 5.64760 5.93588 5.96813 6.25813 6.28708 6.32998 6.72768 6.73915 6.95475 7.30124 8.86816 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.005044 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.728470 B = 5549.298442 C = 6124.336020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.009 4.009 10 C -0.087 4.087 11 C 0.059 3.941 12 N -0.527 5.527 13 C 0.014 3.986 14 C 0.062 3.938 15 O -0.394 6.394 16 C 0.098 3.902 17 C 0.079 3.921 18 C 0.053 3.947 19 N -0.833 5.833 20 C 0.093 3.907 21 O -0.564 6.564 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.017 0.983 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.354 0.646 38 H 0.340 0.660 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.104 -6.999 -1.167 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.068 4.068 12 N -0.252 5.252 13 C -0.114 4.114 14 C -0.015 4.015 15 O -0.312 6.312 16 C 0.021 3.979 17 C -0.012 4.012 18 C -0.081 4.081 19 N -0.368 5.368 20 C 0.014 3.986 21 O -0.371 6.371 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.172 0.828 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 20.694 -8.337 -1.133 22.339 hybrid contribution -0.443 2.689 0.375 2.751 sum 20.251 -5.648 -0.758 21.038 Atomic orbital electron populations 1.70078 1.08376 1.28155 1.52739 1.26048 0.95614 1.03604 0.94128 0.85635 0.79450 0.78123 0.79283 1.18962 1.21071 1.16998 1.21493 0.92198 0.93037 1.50278 0.95173 1.19481 0.93839 0.94932 0.96411 1.21276 0.93336 0.96959 1.00887 1.22207 0.95395 0.88718 1.00488 1.62428 1.10902 1.12417 1.39476 1.22898 1.02024 0.95067 0.91442 1.22762 0.81462 0.94681 1.02547 1.87979 1.23151 1.71322 1.48781 1.22457 1.01219 0.87096 0.87123 1.21676 0.86572 0.97889 0.95022 1.22103 0.90579 0.97035 0.98339 1.58571 1.02388 1.64661 1.11213 1.21959 0.83026 0.97806 0.95797 1.86362 1.22669 1.76085 1.52028 0.92514 0.96142 0.96464 0.93455 0.92930 0.90026 0.94908 0.93942 0.89382 0.86792 0.92333 0.86793 0.93759 0.96348 0.92078 0.82845 0.84731 0.92599 0.93347 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 43.91 27.47 68.60 1.88 45.79 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.32 4.92 30.59 0.15 -3.17 16 11 C 0.06 1.79 4.13 86.30 0.36 2.15 16 12 N -0.53 -14.35 4.50 -845.78 -3.80 -18.15 16 13 C 0.01 0.35 5.04 86.31 0.43 0.79 16 14 C 0.06 1.46 7.01 72.02 0.50 1.96 16 15 O -0.39 -10.48 10.39 -148.98 -1.55 -12.03 16 16 C 0.10 2.43 5.26 72.01 0.38 2.81 16 17 C 0.08 1.88 0.43 3.53 0.00 1.89 16 18 C 0.05 1.23 4.81 86.30 0.42 1.65 16 19 N -0.83 -16.70 8.10 -186.73 -1.51 -18.21 16 20 C 0.09 1.87 5.43 71.98 0.39 2.26 16 21 O -0.56 -8.86 10.02 -148.98 -1.49 -10.35 16 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 23 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 24 H 0.02 0.78 7.19 -2.39 -0.02 0.76 16 25 H 0.05 1.85 6.75 -2.39 -0.02 1.83 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 2.33 5.93 -2.39 -0.01 2.31 16 28 H 0.03 0.99 6.99 -2.39 -0.02 0.97 16 29 H 0.04 1.12 6.26 -2.39 -0.01 1.10 16 30 H 0.09 2.41 6.46 -2.39 -0.02 2.39 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.11 2.88 6.87 -2.39 -0.02 2.86 16 34 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.02 0.45 7.01 -2.39 -0.02 0.43 16 36 H 0.06 1.60 5.93 -2.39 -0.01 1.58 16 37 H 0.35 6.50 6.62 -89.69 -0.59 5.91 16 38 H 0.34 5.89 9.08 -89.69 -0.81 5.07 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 0.98 6.51 -2.39 -0.02 0.96 16 41 H 0.40 2.75 9.12 -74.06 -0.68 2.07 16 Total: -1.00 -68.11 306.68 -3.79 -71.90 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -1.09 Total: 20.72 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.46 Total: -19.89 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -5.02 Total: -96.15 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -3.04 Total: -22.38 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -68.11 -3.79 -71.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693911853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.390 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds