Wall clock time and date at job start Mon Mar 30 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47377 * 2 1 4 4 C 1.52998 * 109.46846 * 240.00052 * 2 1 3 5 5 C 1.50701 * 109.47283 * 169.68483 * 4 2 1 6 6 H 1.07999 * 119.99875 * 355.05978 * 5 4 2 7 7 C 1.37881 * 119.99869 * 175.05596 * 5 4 2 8 8 N 1.31511 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99422 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47085 * 120.00302 * 9 7 5 12 12 H 1.48504 * 109.47022 * 240.00109 * 9 7 5 13 13 N 1.46899 * 109.47173 * 120.00137 * 2 1 3 14 14 C 1.47012 * 111.00112 * 148.23133 * 13 2 1 15 15 C 1.53094 * 109.25717 * 182.39000 * 14 13 2 16 16 O 1.43009 * 109.30115 * 303.13434 * 15 14 13 17 17 C 1.43099 * 113.68409 * 58.64491 * 16 15 14 18 18 C 1.47009 * 110.99827 * 271.87467 * 13 2 1 19 19 C 1.52999 * 109.51160 * 57.67126 * 18 13 2 20 20 N 1.46900 * 109.47118 * 56.53356 * 19 18 13 21 21 C 1.53003 * 109.50647 * 297.53685 * 18 13 2 22 22 O 1.42898 * 109.47091 * 184.88522 * 21 18 13 23 23 H 1.09002 * 109.46963 * 305.63410 * 1 2 3 24 24 H 1.08999 * 109.47066 * 65.62467 * 1 2 3 25 25 H 1.08994 * 109.47632 * 185.63397 * 1 2 3 26 26 H 1.09008 * 109.47323 * 289.68440 * 4 2 1 27 27 H 1.09005 * 109.47432 * 49.67980 * 4 2 1 28 28 H 0.97003 * 119.99445 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.50238 * 62.45848 * 14 13 2 30 30 H 1.08995 * 109.54499 * 302.35541 * 14 13 2 31 31 H 1.09003 * 109.50670 * 63.09253 * 15 14 13 32 32 H 1.09002 * 109.50648 * 183.17663 * 15 14 13 33 33 H 1.09008 * 109.49237 * 181.42260 * 17 16 15 34 34 H 1.08998 * 109.49916 * 61.30680 * 17 16 15 35 35 H 1.09000 * 109.46952 * 176.53134 * 19 18 13 36 36 H 1.08999 * 109.46907 * 296.53134 * 19 18 13 37 37 H 1.00894 * 111.00124 * 180.02562 * 20 19 18 38 38 H 1.00907 * 110.99848 * 303.95580 * 20 19 18 39 39 H 1.09004 * 109.47286 * 304.88704 * 21 18 13 40 40 H 1.09000 * 109.46642 * 64.88475 * 21 18 13 41 41 H 0.96701 * 113.99691 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5253 -0.5048 -1.3832 6 1 4.0393 0.1522 -0.6972 7 6 4.2281 -1.1456 -2.3814 8 7 3.6022 -1.9454 -3.2170 9 14 6.0692 -0.8767 -2.5478 10 1 6.5296 0.0618 -1.4931 11 1 6.7746 -2.1747 -2.3971 12 1 6.3669 -0.3038 -3.8851 13 7 2.0197 -0.6925 1.1994 14 6 3.2954 -1.3722 0.9314 15 6 3.7382 -2.1282 2.1869 16 8 3.8330 -1.2125 3.2813 17 6 2.6073 -0.5327 3.5698 18 6 2.1530 0.2396 2.3284 19 6 0.8025 0.9032 2.6053 20 7 -0.2097 -0.1318 2.8549 21 6 3.1895 1.3117 1.9861 22 8 3.4019 2.1495 3.1241 23 1 -0.3633 0.5987 0.8353 24 1 -0.3633 0.4241 -0.9361 25 1 -0.3634 -1.0226 0.1009 26 1 1.8347 -1.7883 -1.1621 27 1 1.5341 -0.3248 -2.1297 28 1 4.0967 -2.3965 -3.9190 29 1 4.0521 -0.6341 0.6652 30 1 3.1680 -2.0757 0.1088 31 1 3.0078 -2.9022 2.4223 32 1 4.7111 -2.5872 2.0112 33 1 2.7626 0.1629 4.3946 34 1 1.8439 -1.2603 3.8454 35 1 0.8869 1.5473 3.4806 36 1 0.5070 1.4998 1.7422 37 1 -1.1113 0.2814 3.0402 38 1 -0.2611 -0.7806 2.0838 39 1 4.1283 0.8335 1.7066 40 1 2.8270 1.9148 1.1536 41 1 4.0484 2.8538 2.9788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693976027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:16 Heat of formation + Delta-G solvation = -59.509538 kcal Electronic energy + Delta-G solvation = -22120.999105 eV Core-core repulsion = 19037.203649 eV Total energy + Delta-G solvation = -3083.795456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28650 -36.56279 -36.20204 -34.57540 -32.55263 -31.43716 -30.21039 -27.71588 -26.49092 -25.39549 -24.22213 -23.20222 -21.58535 -19.95956 -18.06086 -17.37507 -16.56265 -16.10343 -15.85140 -15.39810 -14.86557 -14.57414 -14.30595 -14.22700 -13.76522 -13.56001 -13.13568 -12.82924 -12.45753 -12.21432 -11.63066 -11.56845 -11.40354 -11.33675 -11.08362 -10.90522 -10.67999 -10.65147 -10.32678 -10.19384 -10.01036 -9.53535 -9.25162 -9.05524 -8.87738 -8.51407 -8.27708 -7.49162 -6.12876 -4.11247 3.21437 3.30887 3.32614 4.27693 4.34138 4.48833 4.56336 4.91799 5.19785 5.23274 5.30001 5.52407 5.68417 5.70915 5.79664 5.85669 5.92040 6.01743 6.05374 6.06067 6.11150 6.17299 6.33180 6.40305 6.44776 6.68802 6.74251 6.84892 7.13976 7.39526 7.41357 7.52642 7.69582 7.77354 7.82198 7.83384 7.87339 7.99328 8.22418 8.86140 9.46773 10.97557 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.008610 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.070473 B = 3251.251276 C = 3707.542653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.073 3.927 3 H 0.039 0.961 4 C 0.019 3.981 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.508 5.508 14 C 0.020 3.980 15 C 0.052 3.948 16 O -0.393 6.393 17 C 0.091 3.909 18 C 0.084 3.916 19 C 0.077 3.923 20 N -0.849 5.849 21 C 0.052 3.948 22 O -0.570 6.570 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.261 0.739 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.330 0.670 38 H 0.357 0.643 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 4.418 9.567 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.034 4.034 3 H 0.057 0.943 4 C -0.018 4.018 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.234 5.234 14 C -0.107 4.107 15 C -0.025 4.025 16 O -0.312 6.312 17 C 0.013 3.987 18 C -0.007 4.007 19 C -0.054 4.054 20 N -0.382 5.382 21 C -0.028 4.028 22 O -0.374 6.374 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.933 3.345 10.510 11.710 hybrid contribution 1.373 1.503 -1.919 2.797 sum -2.561 4.848 8.591 10.192 Atomic orbital electron populations 1.22356 0.96843 1.01485 1.00659 1.21905 0.93302 0.96697 0.91510 0.94292 1.19394 0.95531 0.96474 0.90375 1.21290 0.93241 1.27226 1.13910 0.92531 1.24916 0.98064 0.95471 0.95732 1.69956 1.35674 1.29531 1.17607 0.86663 0.86009 0.78161 0.78030 1.19838 1.20816 1.21028 1.62593 1.28750 1.26996 1.05059 1.23480 0.90542 0.99853 0.96811 1.22954 1.01023 0.91769 0.86737 1.87926 1.33734 1.57804 1.51744 1.22449 0.86212 0.95046 0.94944 1.21646 0.93438 0.91332 0.94279 1.21789 0.90866 0.93101 0.99655 1.58769 1.09447 1.19749 1.50281 1.22897 0.99801 0.92446 0.87662 1.86403 1.65584 1.46845 1.38578 0.93076 0.92966 0.92257 0.94955 0.96326 0.92922 0.91353 0.86600 0.93423 0.89470 0.89188 0.91766 0.90900 0.94800 0.85890 0.82480 0.92341 0.93614 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 7.59 37.16 0.28 -2.25 16 2 C 0.07 1.42 1.83 -67.71 -0.12 1.29 16 3 H 0.04 0.79 5.49 -51.93 -0.29 0.50 16 4 C 0.02 0.46 4.01 -27.88 -0.11 0.35 16 5 C -0.52 -13.11 5.85 -34.44 -0.20 -13.31 16 6 H 0.06 1.42 5.91 -52.49 -0.31 1.11 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 9 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.29 3.74 -210.80 -0.79 -10.07 16 14 C 0.02 0.40 3.60 -3.71 -0.01 0.38 16 15 C 0.05 0.94 7.00 37.21 0.26 1.20 16 16 O -0.39 -7.30 10.37 -35.23 -0.37 -7.67 16 17 C 0.09 1.54 5.46 37.21 0.20 1.75 16 18 C 0.08 1.41 0.27 -131.49 -0.04 1.37 16 19 C 0.08 1.14 4.70 -3.82 -0.02 1.12 16 20 N -0.85 -11.53 8.27 -10.37 -0.09 -11.61 16 21 C 0.05 0.87 5.16 37.16 0.19 1.07 16 22 O -0.57 -8.44 12.33 -35.23 -0.43 -8.88 16 23 H 0.05 0.73 3.84 -51.93 -0.20 0.53 16 24 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.06 0.96 7.62 -51.93 -0.40 0.56 16 26 H 0.03 0.83 7.20 -51.92 -0.37 0.45 16 27 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.50 3.60 -51.93 -0.19 1.31 16 30 H 0.12 2.64 5.40 -51.93 -0.28 2.36 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.09 1.51 7.47 -51.92 -0.39 1.12 16 34 H 0.06 1.11 7.62 -51.93 -0.40 0.71 16 35 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 36 H 0.03 0.52 5.44 -51.93 -0.28 0.23 16 37 H 0.33 3.71 9.08 -39.29 -0.36 3.35 16 38 H 0.36 5.22 5.56 -39.29 -0.22 5.00 16 39 H 0.06 1.11 5.96 -51.93 -0.31 0.80 16 40 H 0.05 0.79 6.27 -51.93 -0.33 0.47 16 41 H 0.37 3.96 9.12 45.56 0.42 4.38 16 LS Contribution 294.02 15.07 4.43 4.43 Total: -1.00 -27.91 294.02 -6.31 -34.22 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.12 Total: 13.82 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 0.34 Total: -5.54 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.14 Total: -45.94 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.80 Total: -16.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.91 -6.31 -34.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693976027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.291 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds