Wall clock time and date at job start Mon Mar 30 2020 04:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99824 * 2 1 4 4 C 1.52999 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46593 * 55.00049 * 4 3 2 6 6 C 1.52997 * 109.46988 * 174.99950 * 4 3 2 7 7 N 1.46897 * 109.47247 * 297.29573 * 6 4 3 8 8 C 1.46898 * 111.00201 * 184.26967 * 7 6 4 9 9 C 1.53237 * 109.34356 * 187.25341 * 8 7 6 10 10 N 1.47078 * 108.52249 * 306.17476 * 9 8 7 11 11 C 1.36934 * 120.88267 * 231.18178 * 10 9 8 12 12 H 1.08006 * 120.00116 * 16.54368 * 11 10 9 13 13 C 1.38807 * 120.00175 * 196.27040 * 11 10 9 14 14 N 1.31621 * 120.00363 * 31.34289 * 13 11 10 15 15 Si 1.86799 * 120.00025 * 211.34922 * 13 11 10 16 16 H 1.48500 * 109.47481 * 94.99288 * 15 13 11 17 17 H 1.48499 * 109.47303 * 214.99555 * 15 13 11 18 18 H 1.48500 * 109.47071 * 334.99332 * 15 13 11 19 19 C 1.47076 * 118.23653 * 51.45733 * 10 9 8 20 20 C 1.46894 * 111.00368 * 308.57649 * 7 6 4 21 21 O 1.42897 * 109.47461 * 295.00435 * 4 3 2 22 22 C 1.42892 * 114.00276 * 154.62370 * 21 4 3 23 23 H 1.08996 * 109.46887 * 299.99157 * 1 2 3 24 24 H 1.08988 * 109.47580 * 60.00114 * 1 2 3 25 25 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47266 * 60.00200 * 3 2 1 27 27 H 1.09005 * 109.47136 * 300.00100 * 3 2 1 28 28 H 1.09004 * 109.46798 * 177.30010 * 6 4 3 29 29 H 1.08994 * 109.47388 * 57.29837 * 6 4 3 30 30 H 1.09004 * 109.49212 * 67.29872 * 8 7 6 31 31 H 1.08996 * 109.49887 * 307.21890 * 8 7 6 32 32 H 1.09005 * 109.63110 * 186.46254 * 9 8 7 33 33 H 1.09007 * 109.62661 * 65.88631 * 9 8 7 34 34 H 0.96994 * 120.00300 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.63028 * 68.24872 * 19 10 9 36 36 H 1.09001 * 109.63204 * 188.82893 * 19 10 9 37 37 H 1.09002 * 109.49666 * 292.70597 * 20 7 6 38 38 H 1.08998 * 109.49220 * 52.75708 * 20 7 6 39 39 H 1.09007 * 109.47033 * 184.98291 * 22 21 4 40 40 H 1.08991 * 109.47325 * 304.98690 * 22 21 4 41 41 H 1.09006 * 109.46989 * 64.99055 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8507 0.5686 -0.8428 6 6 4.1571 2.5771 -0.1264 7 7 3.7668 3.1734 -1.4109 8 6 4.4274 4.4701 -1.6117 9 6 3.8598 5.1398 -2.8676 10 7 3.9793 4.2001 -3.9927 11 6 4.5571 4.5862 -5.1727 12 1 5.1641 5.4787 -5.2101 13 6 4.3672 3.8274 -6.3194 14 7 3.2441 3.1628 -6.4904 15 14 5.7058 3.7494 -7.6199 16 1 6.5483 2.5480 -7.3918 17 1 5.0841 3.6697 -8.9661 18 1 6.5494 4.9687 -7.5358 19 6 3.4561 2.8365 -3.8191 20 6 4.0450 2.2557 -2.5236 21 8 3.9659 0.5793 1.2200 22 6 5.2223 -0.0944 1.1232 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 5.2431 2.4957 -0.0786 29 1 3.8038 3.2078 0.6893 30 1 5.4997 4.3169 -1.7343 31 1 4.2474 5.1080 -0.7464 32 1 4.4243 6.0463 -3.0862 33 1 2.8105 5.3881 -2.7077 34 1 3.1116 2.6323 -7.2915 35 1 2.3688 2.8677 -3.7488 36 1 3.7535 2.2194 -4.6669 37 1 5.1225 2.1332 -2.6335 38 1 3.5879 1.2875 -2.3194 39 1 5.4364 -0.6010 2.0643 40 1 5.1806 -0.8271 0.3174 41 1 6.0085 0.6312 0.9143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694697515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:31 Heat of formation + Delta-G solvation = -49.344672 kcal Electronic energy + Delta-G solvation = -20666.273570 eV Core-core repulsion = 17582.918896 eV Total energy + Delta-G solvation = -3083.354674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23470 -37.63106 -36.99967 -34.53693 -31.87810 -30.26595 -29.93421 -27.46647 -26.62918 -25.72288 -24.35875 -22.95152 -22.52934 -20.61430 -19.07348 -17.14574 -16.70902 -16.48932 -15.74215 -15.24357 -15.04180 -14.82935 -14.33481 -14.20379 -13.92229 -13.61552 -13.47567 -13.23321 -12.96648 -12.37582 -12.00832 -11.86171 -11.61402 -11.46816 -11.25507 -11.13537 -10.76108 -10.63163 -10.42512 -10.35628 -10.11688 -9.75825 -9.71725 -9.54711 -9.40339 -8.44525 -7.89012 -6.85143 -5.85342 -3.08155 3.38524 3.47738 3.48406 3.66485 3.84769 4.41998 4.52277 5.00599 5.09015 5.22859 5.27406 5.33809 5.36125 5.39684 5.40399 5.48792 5.62092 5.65266 5.71393 5.74750 5.87527 5.87983 5.92833 6.02139 6.10572 6.16759 6.28012 6.47479 6.61079 6.86043 7.15158 7.19461 7.28126 7.52031 7.54023 7.63160 7.81198 8.32919 9.15378 9.83683 10.38416 11.24318 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.005336 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.633242 B = 5246.071344 C = 5522.895592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.073 3.927 4 C 0.091 3.909 5 H 0.074 0.926 6 C 0.034 3.966 7 N -0.529 5.529 8 C 0.045 3.955 9 C 0.150 3.850 10 N -0.596 5.596 11 C -0.255 4.255 12 H 0.072 0.928 13 C 0.001 3.999 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.289 1.289 17 H -0.293 1.293 18 H -0.279 1.279 19 C 0.173 3.827 20 C 0.026 3.974 21 O -0.380 6.380 22 C 0.032 3.968 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -4.626 14.024 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.004 4.004 4 C 0.033 3.967 5 H 0.092 0.908 6 C -0.094 4.094 7 N -0.256 5.256 8 C -0.084 4.084 9 C 0.023 3.977 10 N -0.319 5.319 11 C -0.383 4.383 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.216 1.216 17 H -0.220 1.220 18 H -0.204 1.204 19 C 0.047 3.953 20 C -0.103 4.103 21 O -0.298 6.298 22 C -0.065 4.065 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.037 -4.777 14.056 14.882 hybrid contribution 1.586 -0.039 -0.904 1.826 sum 0.549 -4.815 13.153 14.017 Atomic orbital electron populations 1.22692 0.81281 1.02337 1.00005 1.87860 1.19469 1.28214 1.95506 1.22593 0.91331 0.84594 1.01870 1.22248 0.93565 0.93527 0.87372 0.90812 1.22521 0.97748 0.95192 0.93964 1.62040 1.58405 1.04198 1.00908 1.22621 0.96063 0.90241 0.99492 1.20952 0.97729 0.92374 0.86655 1.44289 1.69604 1.07348 1.10674 1.19216 1.22685 1.10271 0.86163 0.91060 1.24702 0.96646 1.01688 0.96676 1.70216 1.21223 1.34539 1.27534 0.86481 0.82826 0.78015 0.80998 1.21624 1.21960 1.20437 1.21030 0.95367 0.86198 0.92745 1.23104 0.98625 0.95221 0.93319 1.87909 1.37286 1.71418 1.33169 1.22756 0.85670 0.95908 1.02165 0.94381 0.93833 0.90001 0.92966 0.89892 0.94777 0.90319 0.95238 0.91862 0.92474 0.95618 0.93624 0.95679 0.88984 0.95491 0.91600 0.89874 0.93919 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.91 10.67 -40.08 -0.43 -6.33 16 3 C 0.07 1.06 5.47 37.16 0.20 1.26 16 4 C 0.09 1.33 1.98 -26.73 -0.05 1.28 16 5 H 0.07 1.14 5.63 -51.93 -0.29 0.85 16 6 C 0.03 0.51 4.82 -3.83 -0.02 0.49 16 7 N -0.53 -9.18 4.01 -234.03 -0.94 -10.12 16 8 C 0.05 0.80 5.61 -3.70 -0.02 0.77 16 9 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16 10 N -0.60 -14.92 3.06 -171.73 -0.53 -15.45 16 11 C -0.25 -6.99 9.63 -15.06 -0.15 -7.13 16 12 H 0.07 1.92 7.93 -52.48 -0.42 1.51 16 13 C 0.00 0.04 4.66 -17.43 -0.08 -0.04 16 14 N -0.89 -25.79 11.39 55.49 0.63 -25.16 16 15 Si 0.89 21.54 29.65 -169.99 -5.04 16.50 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.17 4.12 5.68 -3.36 -0.02 4.10 16 20 C 0.03 0.51 5.22 -3.46 -0.02 0.49 16 21 O -0.38 -5.50 10.33 -40.08 -0.41 -5.91 16 22 C 0.03 0.36 10.84 101.05 1.09 1.46 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.48 8.14 -51.94 -0.42 0.06 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.29 7.52 -51.93 -0.39 0.90 16 28 H 0.03 0.50 7.56 -51.93 -0.39 0.11 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.06 1.14 7.91 -51.93 -0.41 0.73 16 33 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.44 5.80 -51.93 -0.30 2.14 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.18 5.65 -51.93 -0.29 0.89 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.04 0.47 7.97 -51.93 -0.41 0.06 16 41 H 0.04 0.41 7.59 -51.93 -0.39 0.02 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -30.32 323.41 -6.90 -37.22 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -7.09 Total: -2.89 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 2.03 Total: 7.27 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.83 Total: -50.72 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.84 Total: -12.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.04 Total: 16.50 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.32 -6.90 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694697515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds