Wall clock time and date at job start Mon Mar 30 2020 04:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99824 * 2 1 4 4 C 1.52999 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46593 * 55.00049 * 4 3 2 6 6 C 1.52997 * 109.46988 * 174.99950 * 4 3 2 7 7 N 1.46897 * 109.47247 * 297.29573 * 6 4 3 8 8 C 1.46898 * 111.00201 * 184.26967 * 7 6 4 9 9 C 1.53237 * 109.34356 * 187.25341 * 8 7 6 10 10 N 1.47078 * 108.52249 * 306.17476 * 9 8 7 11 11 C 1.36934 * 120.88267 * 231.18178 * 10 9 8 12 12 H 1.08006 * 120.00116 * 16.54368 * 11 10 9 13 13 C 1.38807 * 120.00175 * 196.27040 * 11 10 9 14 14 N 1.31621 * 120.00363 * 31.34289 * 13 11 10 15 15 Si 1.86799 * 120.00025 * 211.34922 * 13 11 10 16 16 H 1.48500 * 109.47481 * 94.99288 * 15 13 11 17 17 H 1.48499 * 109.47303 * 214.99555 * 15 13 11 18 18 H 1.48500 * 109.47071 * 334.99332 * 15 13 11 19 19 C 1.47076 * 118.23653 * 51.45733 * 10 9 8 20 20 C 1.46894 * 111.00368 * 308.57649 * 7 6 4 21 21 O 1.42897 * 109.47461 * 295.00435 * 4 3 2 22 22 C 1.42892 * 114.00276 * 154.62370 * 21 4 3 23 23 H 1.08996 * 109.46887 * 299.99157 * 1 2 3 24 24 H 1.08988 * 109.47580 * 60.00114 * 1 2 3 25 25 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47266 * 60.00200 * 3 2 1 27 27 H 1.09005 * 109.47136 * 300.00100 * 3 2 1 28 28 H 1.09004 * 109.46798 * 177.30010 * 6 4 3 29 29 H 1.08994 * 109.47388 * 57.29837 * 6 4 3 30 30 H 1.09004 * 109.49212 * 67.29872 * 8 7 6 31 31 H 1.08996 * 109.49887 * 307.21890 * 8 7 6 32 32 H 1.09005 * 109.63110 * 186.46254 * 9 8 7 33 33 H 1.09007 * 109.62661 * 65.88631 * 9 8 7 34 34 H 0.96994 * 120.00300 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.63028 * 68.24872 * 19 10 9 36 36 H 1.09001 * 109.63204 * 188.82893 * 19 10 9 37 37 H 1.09002 * 109.49666 * 292.70597 * 20 7 6 38 38 H 1.08998 * 109.49220 * 52.75708 * 20 7 6 39 39 H 1.09007 * 109.47033 * 184.98291 * 22 21 4 40 40 H 1.08991 * 109.47325 * 304.98690 * 22 21 4 41 41 H 1.09006 * 109.46989 * 64.99055 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8507 0.5686 -0.8428 6 6 4.1571 2.5771 -0.1264 7 7 3.7668 3.1734 -1.4109 8 6 4.4274 4.4701 -1.6117 9 6 3.8598 5.1398 -2.8676 10 7 3.9793 4.2001 -3.9927 11 6 4.5571 4.5862 -5.1727 12 1 5.1641 5.4787 -5.2101 13 6 4.3672 3.8274 -6.3194 14 7 3.2441 3.1628 -6.4904 15 14 5.7058 3.7494 -7.6199 16 1 6.5483 2.5480 -7.3918 17 1 5.0841 3.6697 -8.9661 18 1 6.5494 4.9687 -7.5358 19 6 3.4561 2.8365 -3.8191 20 6 4.0450 2.2557 -2.5236 21 8 3.9659 0.5793 1.2200 22 6 5.2223 -0.0944 1.1232 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 5.2431 2.4957 -0.0786 29 1 3.8038 3.2078 0.6893 30 1 5.4997 4.3169 -1.7343 31 1 4.2474 5.1080 -0.7464 32 1 4.4243 6.0463 -3.0862 33 1 2.8105 5.3881 -2.7077 34 1 3.1116 2.6323 -7.2915 35 1 2.3688 2.8677 -3.7488 36 1 3.7535 2.2194 -4.6669 37 1 5.1225 2.1332 -2.6335 38 1 3.5879 1.2875 -2.3194 39 1 5.4364 -0.6010 2.0643 40 1 5.1806 -0.8271 0.3174 41 1 6.0085 0.6312 0.9143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694697515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:31 Heat of formation + Delta-G solvation = -70.688921 kcal Electronic energy + Delta-G solvation = -20667.199126 eV Core-core repulsion = 17582.918896 eV Total energy + Delta-G solvation = -3084.280230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50077 -39.02621 -38.08489 -36.24280 -33.62072 -31.80566 -31.51449 -28.90496 -27.60787 -27.00049 -25.78756 -24.52205 -24.20712 -21.92689 -20.73655 -18.78099 -18.14204 -17.60406 -16.94862 -16.74871 -16.27198 -16.15777 -15.80511 -15.61743 -15.38043 -15.16469 -14.83645 -14.73693 -14.62275 -13.66989 -13.31740 -13.16852 -13.04705 -12.99667 -12.60744 -12.56485 -12.32297 -12.14041 -12.09274 -11.97592 -11.74990 -11.51991 -11.37763 -10.65861 -10.59605 -10.47021 -9.33948 -8.84158 -7.94210 -5.19481 1.45053 1.48763 1.57070 2.50638 2.57348 2.78266 3.13243 3.18675 3.63905 3.85654 3.94237 4.14140 4.22699 4.32018 4.41745 4.45201 4.48052 4.52463 4.57552 4.60043 4.63091 4.66939 4.69888 4.80832 4.82419 4.84675 4.86621 4.93237 4.99409 5.17196 5.35730 5.58340 5.65001 6.04412 6.09486 6.23858 6.25958 6.29539 7.08680 7.83740 8.34872 9.14148 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.005336 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.633242 B = 5246.071344 C = 5522.895592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.075 3.925 4 C 0.095 3.905 5 H 0.062 0.938 6 C 0.042 3.958 7 N -0.533 5.533 8 C 0.055 3.945 9 C 0.144 3.856 10 N -0.614 5.614 11 C -0.265 4.265 12 H 0.073 0.927 13 C -0.049 4.049 14 N -0.925 5.925 15 Si 0.952 3.048 16 H -0.289 1.289 17 H -0.297 1.297 18 H -0.268 1.268 19 C 0.179 3.821 20 C 0.046 3.954 21 O -0.392 6.392 22 C 0.025 3.975 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.251 0.749 35 H 0.001 0.999 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 -4.531 15.743 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.001 4.001 4 C 0.037 3.963 5 H 0.080 0.920 6 C -0.086 4.086 7 N -0.260 5.260 8 C -0.074 4.074 9 C 0.018 3.982 10 N -0.338 5.338 11 C -0.395 4.395 12 H 0.090 0.910 13 C -0.244 4.244 14 N -0.571 5.571 15 Si 0.781 3.219 16 H -0.216 1.216 17 H -0.224 1.224 18 H -0.193 1.193 19 C 0.053 3.947 20 C -0.083 4.083 21 O -0.310 6.310 22 C -0.071 4.071 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.103 -4.667 15.810 16.485 hybrid contribution 1.240 -0.051 -1.377 1.854 sum 1.136 -4.718 14.433 15.227 Atomic orbital electron populations 1.22892 0.79631 1.03732 1.00616 1.87825 1.21380 1.28463 1.95612 1.22526 0.91446 0.84554 1.01569 1.22133 0.93629 0.93277 0.87276 0.92028 1.22504 0.98197 0.95365 0.92497 1.61964 1.58718 1.03926 1.01343 1.22492 0.95397 0.90542 0.98937 1.21134 0.97753 0.92381 0.86884 1.44575 1.69645 1.08459 1.11098 1.19539 1.22448 1.10304 0.87168 0.90967 1.25418 0.98176 1.01977 0.98867 1.70329 1.22834 1.35766 1.28195 0.85463 0.80094 0.78116 0.78225 1.21617 1.22375 1.19294 1.20804 0.94032 0.85851 0.93997 1.22734 0.97682 0.95849 0.92028 1.87889 1.38689 1.71657 1.32763 1.22958 0.84628 0.96053 1.03437 0.92971 0.93981 0.88322 0.92005 0.91342 0.94076 0.88611 0.95593 0.88333 0.91851 0.96194 0.94010 0.98099 0.92169 0.96188 0.90297 0.87737 0.93995 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.01 10.67 -144.34 -1.54 -13.55 16 3 C 0.08 2.11 5.47 71.98 0.39 2.50 16 4 C 0.10 2.62 1.98 30.59 0.06 2.68 16 5 H 0.06 1.84 5.63 -2.38 -0.01 1.82 16 6 C 0.04 1.14 4.82 86.30 0.42 1.55 16 7 N -0.53 -17.58 4.01 -894.34 -3.58 -21.17 16 8 C 0.06 1.82 5.61 86.38 0.48 2.30 16 9 C 0.14 5.88 6.69 86.35 0.58 6.46 16 10 N -0.61 -31.00 3.06 -697.23 -2.13 -33.13 16 11 C -0.27 -14.66 9.63 84.03 0.81 -13.85 16 12 H 0.07 3.89 7.93 -2.91 -0.02 3.87 16 13 C -0.05 -2.73 4.66 84.86 0.40 -2.33 16 14 N -0.93 -55.02 11.39 21.65 0.25 -54.77 16 15 Si 0.95 44.84 29.65 68.60 2.03 46.88 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 17 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C 0.18 8.76 5.68 86.51 0.49 9.25 16 20 C 0.05 1.77 5.22 86.54 0.45 2.22 16 21 O -0.39 -10.45 10.33 -144.34 -1.49 -11.94 16 22 C 0.03 0.52 10.84 113.37 1.23 1.75 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.09 7.52 -2.38 -0.02 2.07 16 28 H 0.04 1.07 7.56 -2.38 -0.02 1.06 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 32 H 0.06 2.46 7.91 -2.38 -0.02 2.44 16 33 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 3.32 5.80 -2.39 -0.01 3.30 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 2.81 5.65 -2.39 -0.01 2.80 16 39 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.04 0.86 7.97 -2.39 -0.02 0.84 16 41 H 0.05 0.87 7.59 -2.38 -0.02 0.85 16 Total: -1.00 -65.06 323.41 1.07 -63.99 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.98 Total: 9.32 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.56 Total: 14.37 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -5.47 Total: -109.06 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -3.03 Total: -25.49 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.06 1.07 -63.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694697515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.700 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds