Wall clock time and date at job start Mon Mar 30 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48506 * 109.47109 * 270.00685 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00314 * 3 2 1 7 7 C 1.37875 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46846 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00335 * 11 10 9 13 13 N 1.46896 * 109.47053 * 65.00581 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 11 10 9 15 15 O 1.21285 * 119.99889 * 260.00048 * 14 11 10 16 16 N 1.34769 * 119.99927 * 80.00142 * 14 11 10 17 17 C 1.46928 * 120.63459 * 359.72143 * 16 14 11 18 18 C 1.52763 * 109.00689 * 233.58347 * 17 16 14 19 19 C 1.53038 * 109.38354 * 305.58552 * 18 17 16 20 20 C 1.53037 * 109.53702 * 61.24374 * 19 18 17 21 21 H 1.08999 * 109.49952 * 58.58782 * 20 19 18 22 22 F 1.39906 * 109.52045 * 178.66728 * 20 19 18 23 23 C 1.46929 * 120.62890 * 180.02562 * 16 14 11 24 24 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47229 * 60.00097 * 9 7 2 26 26 H 1.09001 * 109.47286 * 299.99924 * 9 7 2 27 27 H 1.09002 * 109.46824 * 60.00111 * 10 9 7 28 28 H 1.08991 * 109.47210 * 300.00195 * 10 9 7 29 29 H 1.00900 * 111.00550 * 59.99664 * 13 11 10 30 30 H 1.00896 * 111.00310 * 183.95250 * 13 11 10 31 31 H 1.09001 * 109.58332 * 353.41418 * 17 16 14 32 32 H 1.08992 * 109.58896 * 113.84310 * 17 16 14 33 33 H 1.09005 * 109.55807 * 185.54624 * 18 17 16 34 34 H 1.09002 * 109.38613 * 65.51893 * 18 17 16 35 35 H 1.09001 * 109.45982 * 301.21603 * 19 18 17 36 36 H 1.09007 * 109.45851 * 181.26130 * 19 18 17 37 37 H 1.09004 * 109.58858 * 246.15868 * 23 16 14 38 38 H 1.08996 * 109.58873 * 6.44123 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.7890 -5.0072 0.8414 13 7 0.7272 -5.1183 -1.2556 14 6 2.4550 -6.1299 0.1215 15 8 2.7857 -6.7533 -0.8649 16 7 2.9591 -6.4591 1.3272 17 6 2.5727 -5.7094 2.5303 18 6 3.8349 -5.2265 3.2424 19 6 4.7535 -6.4202 3.5132 20 6 5.1618 -7.0633 2.1859 21 1 5.6672 -6.3245 1.5639 22 9 6.0258 -8.1358 2.4323 23 6 3.9108 -7.5703 1.4626 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 1.3462 -5.1025 -2.0523 30 1 0.1628 -5.9546 -1.2528 31 1 1.9640 -4.8510 2.2461 32 1 2.0051 -6.3574 3.1980 33 1 3.5633 -4.7547 4.1867 34 1 4.3529 -4.5046 2.6109 35 1 4.2265 -7.1526 4.1248 36 1 5.6445 -6.0803 4.0413 37 1 3.4547 -8.3736 2.0413 38 1 4.1827 -7.9410 0.4743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701808681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:27 Heat of formation + Delta-G solvation = -104.504031 kcal Electronic energy + Delta-G solvation = -20001.692664 eV Core-core repulsion = 16792.485795 eV Total energy + Delta-G solvation = -3209.206869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.86350 -40.32569 -37.40576 -35.38151 -32.88122 -32.77422 -30.91655 -30.12093 -26.85604 -25.50563 -23.66559 -22.99978 -21.16814 -20.38269 -18.89666 -17.49403 -16.56215 -16.29241 -16.07279 -15.68284 -15.51943 -15.23672 -14.58278 -14.39443 -14.19182 -13.74801 -13.48786 -13.14987 -12.78415 -12.57847 -12.33038 -12.04168 -11.66762 -11.47811 -11.22291 -11.10905 -10.92096 -10.73110 -10.64679 -10.56638 -10.13119 -9.84176 -9.41358 -9.04448 -8.79888 -8.39969 -8.24842 -5.97205 -3.99612 2.62622 2.87044 3.32524 3.39172 3.41382 4.21031 4.27690 4.43679 4.47141 4.60373 4.71702 4.80185 4.95191 5.06794 5.23485 5.31200 5.38409 5.43342 5.49564 5.56020 5.60091 5.73472 5.76010 5.77698 6.03382 6.32473 6.40486 6.59921 7.01817 7.23555 7.44460 7.71419 7.74973 7.91475 8.08968 8.16369 8.44270 9.08236 9.63902 11.13636 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.005188 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.822461 B = 5396.284689 C = 6114.589479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.097 4.097 11 C 0.079 3.921 12 H 0.100 0.900 13 N -0.807 5.807 14 C 0.487 3.513 15 O -0.551 6.551 16 N -0.610 5.610 17 C 0.098 3.902 18 C -0.135 4.135 19 C -0.144 4.144 20 C 0.077 3.923 21 H 0.088 0.912 22 F -0.210 7.210 23 C 0.087 3.913 24 H 0.260 0.740 25 H 0.035 0.965 26 H 0.013 0.987 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.348 0.652 30 H 0.334 0.666 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.137 -13.708 7.576 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.275 3.725 15 O -0.429 6.429 16 N -0.345 5.345 17 C -0.025 4.025 18 C -0.173 4.173 19 C -0.182 4.182 20 C 0.040 3.960 21 H 0.106 0.894 22 F -0.191 7.191 23 C -0.037 4.037 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.799 -13.245 7.238 16.170 hybrid contribution 1.174 -0.060 0.027 1.176 sum 6.972 -13.305 7.266 16.687 Atomic orbital electron populations 1.69970 1.05949 1.26458 1.50735 1.24978 0.94784 0.99026 0.95424 0.86663 0.79810 0.83790 0.78113 1.20710 1.21275 1.20020 1.21256 0.92861 0.91274 1.50739 0.93016 1.19016 0.93506 0.89764 0.98239 1.21716 0.98942 0.92083 1.00790 1.21890 0.93506 0.93195 0.95128 0.88258 1.59010 1.26866 1.44308 1.03248 1.22877 0.82192 0.85623 0.81841 1.90643 1.61277 1.54341 1.36616 1.48164 1.44903 1.33156 1.08253 1.21887 0.97292 0.97139 0.86176 1.21827 0.95977 0.97472 1.02014 1.22126 1.01084 0.98671 0.96309 1.21926 0.89481 0.86471 0.98102 0.89418 1.92811 1.71733 1.58874 1.95705 1.22009 0.89040 0.89825 1.02850 0.93066 0.94649 0.96863 0.92669 0.92795 0.83786 0.85396 0.87660 0.91115 0.89315 0.90391 0.90614 0.90362 0.90695 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.88 4.45 -26.73 -0.12 -2.00 16 11 C 0.08 1.28 2.29 -68.87 -0.16 1.12 16 12 H 0.10 1.51 6.81 -51.93 -0.35 1.16 16 13 N -0.81 -13.35 8.44 -5.65 -0.05 -13.40 16 14 C 0.49 7.61 6.94 -10.99 -0.08 7.54 16 15 O -0.55 -10.10 15.66 5.55 0.09 -10.01 16 16 N -0.61 -7.74 2.98 -173.05 -0.52 -8.26 16 17 C 0.10 1.02 5.73 -3.93 -0.02 1.00 16 18 C -0.13 -1.26 6.06 -26.83 -0.16 -1.42 16 19 C -0.14 -1.27 5.62 -26.69 -0.15 -1.42 16 20 C 0.08 0.83 4.02 -26.63 -0.11 0.72 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 22 F -0.21 -2.51 17.09 2.25 0.04 -2.47 16 23 C 0.09 1.01 6.17 -3.73 -0.02 0.99 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.04 0.96 7.75 -51.93 -0.40 0.55 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.99 6.94 -51.93 -0.36 0.63 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 30 H 0.33 4.80 9.06 -39.29 -0.36 4.45 16 31 H 0.11 1.23 4.82 -51.93 -0.25 0.98 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -31.39 309.34 -7.20 -38.58 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.77 Total: 6.16 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.36 Total: -5.94 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.17 Total: -47.28 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.39 -7.20 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701808681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.922 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds