Wall clock time and date at job start Mon Mar 30 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48506 * 109.47109 * 270.00685 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00314 * 3 2 1 7 7 C 1.37875 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46846 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00335 * 11 10 9 13 13 N 1.46896 * 109.47053 * 65.00581 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 11 10 9 15 15 O 1.21285 * 119.99889 * 260.00048 * 14 11 10 16 16 N 1.34769 * 119.99927 * 80.00142 * 14 11 10 17 17 C 1.46928 * 120.63459 * 359.72143 * 16 14 11 18 18 C 1.52763 * 109.00689 * 233.58347 * 17 16 14 19 19 C 1.53038 * 109.38354 * 305.58552 * 18 17 16 20 20 C 1.53037 * 109.53702 * 61.24374 * 19 18 17 21 21 H 1.08999 * 109.49952 * 58.58782 * 20 19 18 22 22 F 1.39906 * 109.52045 * 178.66728 * 20 19 18 23 23 C 1.46929 * 120.62890 * 180.02562 * 16 14 11 24 24 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47229 * 60.00097 * 9 7 2 26 26 H 1.09001 * 109.47286 * 299.99924 * 9 7 2 27 27 H 1.09002 * 109.46824 * 60.00111 * 10 9 7 28 28 H 1.08991 * 109.47210 * 300.00195 * 10 9 7 29 29 H 1.00900 * 111.00550 * 59.99664 * 13 11 10 30 30 H 1.00896 * 111.00310 * 183.95250 * 13 11 10 31 31 H 1.09001 * 109.58332 * 353.41418 * 17 16 14 32 32 H 1.08992 * 109.58896 * 113.84310 * 17 16 14 33 33 H 1.09005 * 109.55807 * 185.54624 * 18 17 16 34 34 H 1.09002 * 109.38613 * 65.51893 * 18 17 16 35 35 H 1.09001 * 109.45982 * 301.21603 * 19 18 17 36 36 H 1.09007 * 109.45851 * 181.26130 * 19 18 17 37 37 H 1.09004 * 109.58858 * 246.15868 * 23 16 14 38 38 H 1.08996 * 109.58873 * 6.44123 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.7890 -5.0072 0.8414 13 7 0.7272 -5.1183 -1.2556 14 6 2.4550 -6.1299 0.1215 15 8 2.7857 -6.7533 -0.8649 16 7 2.9591 -6.4591 1.3272 17 6 2.5727 -5.7094 2.5303 18 6 3.8349 -5.2265 3.2424 19 6 4.7535 -6.4202 3.5132 20 6 5.1618 -7.0633 2.1859 21 1 5.6672 -6.3245 1.5639 22 9 6.0258 -8.1358 2.4323 23 6 3.9108 -7.5703 1.4626 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 1.3462 -5.1025 -2.0523 30 1 0.1628 -5.9546 -1.2528 31 1 1.9640 -4.8510 2.2461 32 1 2.0051 -6.3574 3.1980 33 1 3.5633 -4.7547 4.1867 34 1 4.3529 -4.5046 2.6109 35 1 4.2265 -7.1526 4.1248 36 1 5.6445 -6.0803 4.0413 37 1 3.4547 -8.3736 2.0413 38 1 4.1827 -7.9410 0.4743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701808681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:27 Heat of formation + Delta-G solvation = -125.843272 kcal Electronic energy + Delta-G solvation = -20002.618003 eV Core-core repulsion = 16792.485795 eV Total energy + Delta-G solvation = -3210.132208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.76413 -41.49335 -38.43895 -36.91588 -34.83063 -33.74018 -31.97291 -31.75841 -28.33027 -26.82456 -25.06084 -24.05210 -22.37965 -21.82985 -20.01776 -18.74334 -18.28354 -17.49995 -17.12353 -16.91034 -16.65299 -16.43698 -16.13799 -15.65770 -15.26783 -15.07560 -14.53376 -14.27628 -14.09840 -13.84646 -13.67522 -13.43559 -13.38882 -12.80001 -12.53111 -12.39669 -12.17923 -12.03079 -11.99145 -11.70708 -11.62494 -11.47039 -11.21409 -10.99337 -10.47203 -9.82038 -9.65877 -8.12070 -6.21898 1.38150 1.43595 1.44697 1.54685 1.81424 2.45920 3.21501 3.31518 3.40986 3.51980 3.65200 3.70635 3.82027 3.99412 4.05991 4.24292 4.28470 4.39217 4.50484 4.65894 4.71947 4.73196 4.82341 4.93209 5.00444 5.04739 5.22833 5.32353 5.40970 5.59229 5.85928 6.00243 6.04228 6.22813 6.32037 6.48953 6.96032 6.96710 7.46312 8.99069 Molecular weight = 258.15amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.005188 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.822461 B = 5396.284689 C = 6114.589479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.113 0.887 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.582 6.582 16 N -0.602 5.602 17 C 0.091 3.909 18 C -0.131 4.131 19 C -0.136 4.136 20 C 0.079 3.921 21 H 0.079 0.921 22 F -0.216 7.216 23 C 0.087 3.913 24 H 0.262 0.738 25 H 0.004 0.996 26 H -0.002 1.002 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.345 0.655 30 H 0.347 0.653 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -13.886 9.278 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.120 4.120 11 C -0.029 4.029 12 H 0.131 0.869 13 N -0.347 5.347 14 C 0.276 3.724 15 O -0.462 6.462 16 N -0.335 5.335 17 C -0.031 4.031 18 C -0.169 4.169 19 C -0.174 4.174 20 C 0.042 3.958 21 H 0.097 0.903 22 F -0.197 7.197 23 C -0.037 4.037 24 H 0.070 0.930 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.727 -13.438 8.980 17.506 hybrid contribution 0.877 -0.040 -0.482 1.001 sum 7.604 -13.478 8.499 17.655 Atomic orbital electron populations 1.70097 1.07580 1.27463 1.51779 1.25841 0.95622 1.02824 0.95024 0.85590 0.78865 0.79228 0.78200 1.20437 1.20789 1.18719 1.21703 0.93298 0.92658 1.50283 0.92679 1.18815 0.93784 0.91132 0.95894 1.21428 0.97786 0.91940 1.00816 1.21685 0.93671 0.91995 0.95545 0.86890 1.59001 1.27163 1.45283 1.03285 1.22541 0.82096 0.85307 0.82410 1.90633 1.62320 1.55397 1.37898 1.48170 1.44140 1.33156 1.08024 1.22121 0.98165 0.97144 0.85623 1.21820 0.95208 0.97395 1.02505 1.22095 1.01574 0.98551 0.95195 1.21929 0.88716 0.86021 0.99157 0.90316 1.92801 1.71931 1.59258 1.95753 1.22076 0.89431 0.89872 1.02314 0.92960 0.97767 0.98343 0.91111 0.94221 0.84178 0.84007 0.88905 0.88272 0.87135 0.92050 0.88999 0.89293 0.88676 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.04 2.05 4.86 29.85 0.15 2.20 16 10 C -0.08 -3.16 4.45 30.60 0.14 -3.02 16 11 C 0.09 2.79 2.29 44.17 0.10 2.90 16 12 H 0.11 3.33 6.81 -2.39 -0.02 3.31 16 13 N -0.82 -27.34 8.44 -171.80 -1.45 -28.79 16 14 C 0.49 14.98 6.94 87.66 0.61 15.59 16 15 O -0.58 -21.33 15.66 -3.05 -0.05 -21.38 16 16 N -0.60 -14.30 2.98 -819.81 -2.44 -16.74 16 17 C 0.09 1.67 5.73 86.22 0.49 2.17 16 18 C -0.13 -2.08 6.06 30.53 0.19 -1.90 16 19 C -0.14 -1.98 5.62 30.62 0.17 -1.81 16 20 C 0.08 1.54 4.02 30.66 0.12 1.66 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 F -0.22 -4.78 17.09 44.97 0.77 -4.01 16 23 C 0.09 1.88 6.17 86.35 0.53 2.41 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.00 0.22 7.75 -2.39 -0.02 0.20 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.07 2.50 6.94 -2.39 -0.02 2.48 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.34 11.88 8.58 -89.69 -0.77 11.11 16 30 H 0.35 9.93 9.06 -89.70 -0.81 9.11 16 31 H 0.09 1.99 4.82 -2.39 -0.01 1.98 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 Total: -1.00 -67.40 309.34 1.82 -65.57 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.51 Total: 23.71 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 3.19 Total: -8.69 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -3.61 Total: -100.73 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.77 Total: -4.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.40 1.82 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701808681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.269 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds