Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47167 * 2 1 4 4 C 1.42891 * 114.00357 * 175.06355 * 3 2 1 5 5 H 1.09003 * 109.47095 * 334.11662 * 4 3 2 6 6 C 1.52995 * 109.47472 * 214.12050 * 4 3 2 7 7 O 1.42904 * 109.46917 * 294.99955 * 6 4 3 8 8 C 1.42903 * 113.99896 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46685 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47205 * 65.00348 * 9 8 7 11 11 C 1.42896 * 114.00335 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47357 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99954 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99676 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00019 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47336 * 89.99912 * 16 14 12 18 18 H 1.48497 * 109.47217 * 210.00232 * 16 14 12 19 19 H 1.48502 * 109.47227 * 330.00267 * 16 14 12 20 20 C 1.53000 * 109.47316 * 94.11725 * 4 3 2 21 21 C 1.53005 * 117.49611 * 254.25443 * 20 4 3 22 22 C 1.53008 * 117.49824 * 185.59729 * 20 4 3 23 23 H 1.09006 * 109.46604 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47261 * 300.00249 * 1 2 3 25 25 H 1.09001 * 109.46563 * 60.00394 * 1 2 3 26 26 H 1.09004 * 109.47060 * 119.99606 * 2 1 3 27 27 H 1.08991 * 109.47261 * 239.99751 * 2 1 3 28 28 H 1.09002 * 109.47479 * 54.99653 * 6 4 3 29 29 H 1.09000 * 109.47480 * 174.99604 * 6 4 3 30 30 H 1.08994 * 109.47250 * 299.99629 * 8 7 6 31 31 H 1.08996 * 109.46790 * 60.00119 * 8 7 6 32 32 H 1.09008 * 109.46705 * 184.99900 * 9 8 7 33 33 H 1.08994 * 109.47617 * 304.99978 * 9 8 7 34 34 H 1.09005 * 109.47242 * 299.99874 * 11 10 9 35 35 H 1.09003 * 109.47173 * 59.99499 * 11 10 9 36 36 H 0.97001 * 119.99289 * 179.97438 * 15 14 12 37 37 H 1.08994 * 115.54991 * 39.92377 * 20 4 3 38 38 H 1.08992 * 117.50074 * 0.02562 * 21 20 4 39 39 H 1.09002 * 117.49322 * 145.01692 * 21 20 4 40 40 H 1.08993 * 117.49867 * 214.97485 * 22 20 4 41 41 H 1.08995 * 117.49799 * 0.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4263 1.4618 0.1123 5 1 3.8226 0.5825 0.6202 6 6 3.7748 2.7157 0.9167 7 8 3.3579 3.8761 0.1944 8 6 3.6379 5.1081 0.8622 9 6 3.1519 6.2763 0.0019 10 8 1.7285 6.2235 -0.1128 11 6 1.1694 7.2766 -0.9005 12 6 -0.3289 7.1235 -0.9530 13 1 -0.8063 6.3037 -0.4368 14 6 -1.0900 8.0294 -1.6608 15 7 -2.3975 7.8955 -1.7070 16 14 -0.2641 9.4469 -2.5541 17 1 0.0766 9.0288 -3.9377 18 1 -1.1885 10.6081 -2.6014 19 1 0.9763 9.8307 -1.8334 20 6 4.0418 1.5646 -1.2846 21 6 4.7705 0.3337 -1.8278 22 6 5.5685 1.5630 -1.3858 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.2639 2.6837 1.8791 29 1 4.8520 2.7559 1.0785 30 1 3.1238 5.1255 1.8231 31 1 4.7122 5.1981 1.0231 32 1 3.4442 7.2172 0.4683 33 1 3.5991 6.2081 -0.9897 34 1 1.4205 8.2381 -0.4524 35 1 1.5755 7.2295 -1.9109 36 1 -2.9330 8.5331 -2.2047 37 1 3.4908 2.1785 -1.9971 38 1 4.8110 -0.5493 -1.1902 39 1 4.6991 0.1381 -2.8978 40 1 6.0219 2.1754 -2.1651 41 1 6.1343 1.4882 -0.4572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703563711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = -117.815278 kcal Electronic energy + Delta-G solvation = -19631.175663 eV Core-core repulsion = 16512.559129 eV Total energy + Delta-G solvation = -3118.616534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20419 -37.55476 -36.45453 -36.21172 -32.60254 -31.67511 -30.10901 -28.48911 -27.18872 -23.73380 -22.79737 -22.39004 -22.07548 -21.70947 -20.31186 -17.35117 -16.84438 -16.50140 -15.93301 -15.68568 -15.25987 -14.91481 -14.70274 -14.33895 -14.33465 -13.94215 -13.27450 -12.66681 -12.51176 -12.40085 -12.12626 -11.95211 -11.84391 -11.67639 -11.34537 -11.17794 -11.03366 -10.92137 -10.71968 -10.48008 -10.33842 -10.09986 -9.80791 -9.42311 -9.34092 -9.08468 -8.76833 -8.38274 -6.03788 -4.01842 3.30093 3.36287 3.38107 3.55853 3.75655 3.87338 4.42112 4.56735 4.71532 4.73627 4.90293 5.01909 5.07849 5.19555 5.24335 5.27411 5.31442 5.37664 5.46785 5.51057 5.52238 5.60435 5.65644 5.77920 5.81310 5.92090 5.96268 5.97379 5.99468 6.18732 6.20698 6.28772 6.67625 7.08044 7.28680 7.51296 7.67948 8.11656 8.76116 9.09887 9.55887 11.09511 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.004544 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.140012 B = 6160.014150 C = 6850.126901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.359 6.359 4 C 0.126 3.874 5 H 0.069 0.931 6 C 0.066 3.934 7 O -0.356 6.356 8 C 0.067 3.933 9 C 0.061 3.939 10 O -0.371 6.371 11 C 0.168 3.832 12 C -0.515 4.515 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.159 4.159 21 C -0.187 4.187 22 C -0.172 4.172 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.001 0.999 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.341 -15.093 4.051 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.068 3.932 5 H 0.087 0.913 6 C -0.011 4.011 7 O -0.275 6.275 8 C -0.010 4.010 9 C -0.017 4.017 10 O -0.290 6.290 11 C 0.093 3.907 12 C -0.553 4.553 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.177 4.177 21 C -0.224 4.224 22 C -0.209 4.209 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.826 -14.998 3.868 22.145 hybrid contribution 0.841 0.797 -0.429 1.235 sum 16.667 -14.202 3.439 22.166 Atomic orbital electron populations 1.21742 0.93614 1.01778 1.03876 1.22523 0.95927 0.84219 0.99372 1.88169 1.19809 1.25515 1.94286 1.21650 0.82331 0.96009 0.93259 0.91315 1.22541 0.97729 0.85945 0.94867 1.88120 1.82520 1.12456 1.44406 1.22526 0.97689 0.84478 0.96269 1.22312 0.85654 0.95121 0.98599 1.88003 1.16326 1.51774 1.72857 1.20600 0.95282 0.85613 0.89234 1.20915 0.88423 1.13484 1.32450 0.89887 1.24764 0.94724 0.97505 0.96007 1.69885 1.04437 1.37036 1.42214 0.86853 0.79765 0.82449 0.80684 1.19952 1.20839 1.19155 1.22742 0.94424 1.01346 0.99216 1.23050 1.05490 0.92314 1.01541 1.22857 0.93759 1.01314 1.03018 0.91496 0.91686 0.91371 0.93994 0.93557 0.92857 0.92693 0.92745 0.92990 0.93064 0.93644 0.98122 0.98411 0.92466 0.86323 0.89237 0.88814 0.88617 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.06 0.66 6.53 37.16 0.24 0.90 16 3 O -0.36 -5.58 9.95 -40.09 -0.40 -5.98 16 4 C 0.13 1.58 2.72 -26.73 -0.07 1.51 16 5 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 6 C 0.07 0.87 5.65 37.15 0.21 1.08 16 7 O -0.36 -6.22 9.76 -49.80 -0.49 -6.70 16 8 C 0.07 1.05 6.32 37.16 0.23 1.29 16 9 C 0.06 1.14 6.32 37.16 0.23 1.38 16 10 O -0.37 -9.36 10.29 -40.08 -0.41 -9.77 16 11 C 0.17 4.51 4.76 36.01 0.17 4.69 16 12 C -0.51 -16.04 9.99 -34.44 -0.34 -16.38 16 13 H 0.08 2.84 8.06 -52.49 -0.42 2.42 16 14 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.90 -28.49 13.96 55.43 0.77 -27.71 16 16 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 C -0.16 -1.96 4.96 -90.61 -0.45 -2.41 16 21 C -0.19 -1.79 10.18 -26.69 -0.27 -2.06 16 22 C -0.17 -1.69 9.91 -26.69 -0.26 -1.96 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.41 7.98 -51.93 -0.41 -0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 35 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 36 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -34.98 343.55 -7.52 -42.50 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.48 Total: -3.61 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.02 Total: -11.27 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.77 Total: -27.71 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.30 Total: -22.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.98 -7.52 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703563711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.318 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds