Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47167 * 2 1 4 4 C 1.42891 * 114.00357 * 175.06355 * 3 2 1 5 5 H 1.09003 * 109.47095 * 334.11662 * 4 3 2 6 6 C 1.52995 * 109.47472 * 214.12050 * 4 3 2 7 7 O 1.42904 * 109.46917 * 294.99955 * 6 4 3 8 8 C 1.42903 * 113.99896 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46685 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47205 * 65.00348 * 9 8 7 11 11 C 1.42896 * 114.00335 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47357 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99954 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99676 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00019 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47336 * 89.99912 * 16 14 12 18 18 H 1.48497 * 109.47217 * 210.00232 * 16 14 12 19 19 H 1.48502 * 109.47227 * 330.00267 * 16 14 12 20 20 C 1.53000 * 109.47316 * 94.11725 * 4 3 2 21 21 C 1.53005 * 117.49611 * 254.25443 * 20 4 3 22 22 C 1.53008 * 117.49824 * 185.59729 * 20 4 3 23 23 H 1.09006 * 109.46604 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47261 * 300.00249 * 1 2 3 25 25 H 1.09001 * 109.46563 * 60.00394 * 1 2 3 26 26 H 1.09004 * 109.47060 * 119.99606 * 2 1 3 27 27 H 1.08991 * 109.47261 * 239.99751 * 2 1 3 28 28 H 1.09002 * 109.47479 * 54.99653 * 6 4 3 29 29 H 1.09000 * 109.47480 * 174.99604 * 6 4 3 30 30 H 1.08994 * 109.47250 * 299.99629 * 8 7 6 31 31 H 1.08996 * 109.46790 * 60.00119 * 8 7 6 32 32 H 1.09008 * 109.46705 * 184.99900 * 9 8 7 33 33 H 1.08994 * 109.47617 * 304.99978 * 9 8 7 34 34 H 1.09005 * 109.47242 * 299.99874 * 11 10 9 35 35 H 1.09003 * 109.47173 * 59.99499 * 11 10 9 36 36 H 0.97001 * 119.99289 * 179.97438 * 15 14 12 37 37 H 1.08994 * 115.54991 * 39.92377 * 20 4 3 38 38 H 1.08992 * 117.50074 * 0.02562 * 21 20 4 39 39 H 1.09002 * 117.49322 * 145.01692 * 21 20 4 40 40 H 1.08993 * 117.49867 * 214.97485 * 22 20 4 41 41 H 1.08995 * 117.49799 * 0.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4263 1.4618 0.1123 5 1 3.8226 0.5825 0.6202 6 6 3.7748 2.7157 0.9167 7 8 3.3579 3.8761 0.1944 8 6 3.6379 5.1081 0.8622 9 6 3.1519 6.2763 0.0019 10 8 1.7285 6.2235 -0.1128 11 6 1.1694 7.2766 -0.9005 12 6 -0.3289 7.1235 -0.9530 13 1 -0.8063 6.3037 -0.4368 14 6 -1.0900 8.0294 -1.6608 15 7 -2.3975 7.8955 -1.7070 16 14 -0.2641 9.4469 -2.5541 17 1 0.0766 9.0288 -3.9377 18 1 -1.1885 10.6081 -2.6014 19 1 0.9763 9.8307 -1.8334 20 6 4.0418 1.5646 -1.2846 21 6 4.7705 0.3337 -1.8278 22 6 5.5685 1.5630 -1.3858 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.2639 2.6837 1.8791 29 1 4.8520 2.7559 1.0785 30 1 3.1238 5.1255 1.8231 31 1 4.7122 5.1981 1.0231 32 1 3.4442 7.2172 0.4683 33 1 3.5991 6.2081 -0.9897 34 1 1.4205 8.2381 -0.4524 35 1 1.5755 7.2295 -1.9109 36 1 -2.9330 8.5331 -2.2047 37 1 3.4908 2.1785 -1.9971 38 1 4.8110 -0.5493 -1.1902 39 1 4.6991 0.1381 -2.8978 40 1 6.0219 2.1754 -2.1651 41 1 6.1343 1.4882 -0.4572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703563711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = -142.203164 kcal Electronic energy + Delta-G solvation = -19632.233201 eV Core-core repulsion = 16512.559129 eV Total energy + Delta-G solvation = -3119.674072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18709 -38.99956 -37.83680 -37.27608 -34.89031 -32.69077 -31.51914 -29.98473 -28.90012 -24.66421 -24.03586 -23.72727 -23.36247 -23.13999 -21.24058 -19.09199 -18.35936 -17.77214 -17.42804 -16.81670 -16.66939 -16.07458 -16.06267 -15.92223 -15.73843 -15.02631 -14.71350 -14.49722 -13.83944 -13.54625 -13.34979 -13.26257 -13.14195 -12.81220 -12.68943 -12.43834 -12.38614 -12.15007 -12.03919 -11.84517 -11.78090 -11.37728 -11.31497 -10.94964 -10.92402 -10.48538 -10.37701 -10.35130 -8.38070 -6.46412 1.31803 1.36147 1.47028 2.29132 2.67132 2.81390 2.93372 2.94063 3.09343 3.72335 3.92540 4.04446 4.09723 4.16956 4.20049 4.27136 4.33175 4.41011 4.41930 4.49736 4.52613 4.59684 4.61320 4.62868 4.76650 4.78521 4.86798 4.89368 4.99260 5.00554 5.05387 5.24124 5.25397 5.31549 5.42238 5.93030 6.29515 6.49824 6.57542 6.76638 7.18041 8.79705 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.004544 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.140012 B = 6160.014150 C = 6850.126901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.404 6.404 4 C 0.122 3.878 5 H 0.102 0.898 6 C 0.060 3.940 7 O -0.395 6.395 8 C 0.068 3.932 9 C 0.048 3.952 10 O -0.406 6.406 11 C 0.179 3.821 12 C -0.549 4.549 13 H 0.024 0.976 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.243 1.243 20 C -0.185 4.185 21 C -0.172 4.172 22 C -0.160 4.160 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.018 0.982 35 H 0.007 0.993 36 H 0.274 0.726 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.572 -14.909 4.020 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.324 6.324 4 C 0.065 3.935 5 H 0.120 0.880 6 C -0.017 4.017 7 O -0.315 6.315 8 C -0.008 4.008 9 C -0.028 4.028 10 O -0.326 6.326 11 C 0.104 3.896 12 C -0.586 4.586 13 H 0.042 0.958 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.781 3.219 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.166 1.166 20 C -0.204 4.204 21 C -0.209 4.209 22 C -0.196 4.196 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.075 -14.839 3.856 24.473 hybrid contribution -0.211 0.615 -0.370 0.748 sum 18.865 -14.224 3.486 23.882 Atomic orbital electron populations 1.21792 0.94255 1.03172 1.01916 1.22692 0.95533 0.83145 1.01020 1.88123 1.21921 1.27810 1.94588 1.21862 0.81096 0.96930 0.93619 0.88042 1.22832 0.99685 0.84790 0.94375 1.88078 1.83548 1.13961 1.45915 1.22605 1.00131 0.83157 0.94880 1.22758 0.82030 0.98066 0.99995 1.87952 1.20510 1.51522 1.72624 1.20321 0.92437 0.86754 0.90125 1.21179 0.91434 1.12718 1.33291 0.95784 1.25900 0.95333 1.00921 0.96422 1.70047 1.06567 1.38653 1.42995 0.85549 0.79418 0.77630 0.79353 1.18535 1.19426 1.16607 1.22523 0.95900 1.03340 0.98598 1.23142 1.03445 0.92328 1.01951 1.22964 0.91837 1.00935 1.03911 0.88421 0.93065 0.93855 0.91411 0.92536 0.93198 0.89184 0.93294 0.88282 0.90361 0.93196 0.96475 0.97536 0.91730 0.90669 0.87124 0.88789 0.88759 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 10.28 71.98 0.74 -2.95 16 2 C 0.05 1.20 6.53 71.98 0.47 1.67 16 3 O -0.40 -12.92 9.95 -144.34 -1.44 -14.36 16 4 C 0.12 2.97 2.72 30.59 0.08 3.05 16 5 H 0.10 1.72 7.47 -2.39 -0.02 1.70 16 6 C 0.06 1.49 5.65 71.98 0.41 1.90 16 7 O -0.40 -13.78 9.76 -135.05 -1.32 -15.09 16 8 C 0.07 2.06 6.32 71.98 0.45 2.51 16 9 C 0.05 1.75 6.32 71.98 0.45 2.21 16 10 O -0.41 -20.96 10.29 -144.34 -1.49 -22.44 16 11 C 0.18 9.67 4.76 71.24 0.34 10.01 16 12 C -0.55 -35.66 9.99 25.60 0.26 -35.41 16 13 H 0.02 1.77 8.06 -2.91 -0.02 1.74 16 14 C 0.01 0.74 5.47 84.66 0.46 1.20 16 15 N -0.94 -61.71 13.96 21.45 0.30 -61.41 16 16 Si 0.96 45.01 27.47 68.60 1.88 46.89 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 20 C -0.18 -4.47 4.96 -10.79 -0.05 -4.53 16 21 C -0.17 -2.93 10.18 30.62 0.31 -2.61 16 22 C -0.16 -2.76 9.91 30.62 0.30 -2.45 16 23 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.19 7.98 -2.38 -0.02 1.17 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.56 7.87 -2.39 -0.02 1.55 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 35 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 36 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.11 1.42 8.08 -2.39 -0.02 1.41 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.45 8.03 -2.39 -0.02 1.43 16 Total: -1.00 -81.37 343.55 3.08 -78.29 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.91 Total: 13.51 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.23 Total: -25.39 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.30 Total: -61.41 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -4.24 Total: -51.90 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -81.37 3.08 -78.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703563711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.912 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds