Wall clock time and date at job start Mon Mar 30 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47022 * 110.99770 * 2 1 4 4 C 1.53090 * 109.25918 * 177.60422 * 3 2 1 5 5 O 1.43020 * 109.25947 * 56.85055 * 4 3 2 6 6 C 1.43020 * 113.73459 * 301.33226 * 5 4 3 7 7 C 1.47007 * 111.00392 * 236.36638 * 2 1 3 8 8 H 1.08997 * 109.53988 * 62.43279 * 7 2 1 9 9 C 1.52995 * 109.50630 * 302.32445 * 7 2 1 10 10 N 1.46896 * 109.47329 * 305.35122 * 9 7 2 11 11 C 1.46906 * 111.00291 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47204 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47162 * 64.99558 * 12 11 10 14 14 C 1.42900 * 113.99923 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47294 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00151 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47448 * 90.00469 * 19 17 15 21 21 H 1.48503 * 109.47121 * 210.00382 * 19 17 15 22 22 H 1.48502 * 109.47419 * 330.00107 * 19 17 15 23 23 H 1.09002 * 109.46915 * 189.63788 * 1 2 3 24 24 H 1.08997 * 109.47392 * 309.63967 * 1 2 3 25 25 H 1.08995 * 109.47289 * 69.64241 * 1 2 3 26 26 H 1.09001 * 109.50211 * 57.67219 * 3 2 1 27 27 H 1.08992 * 109.50739 * 297.54454 * 3 2 1 28 28 H 1.09002 * 109.50989 * 296.91414 * 4 3 2 29 29 H 1.08996 * 109.54300 * 176.80685 * 4 3 2 30 30 H 1.09006 * 109.50547 * 298.72701 * 6 5 4 31 31 H 1.09005 * 109.50098 * 178.60672 * 6 5 4 32 32 H 1.09003 * 109.47389 * 185.34926 * 9 7 2 33 33 H 1.09003 * 109.47255 * 65.35277 * 9 7 2 34 34 H 1.00902 * 110.99786 * 56.04503 * 10 9 7 35 35 H 1.08997 * 109.47141 * 60.00002 * 11 10 9 36 36 H 1.08999 * 109.46888 * 299.99836 * 11 10 9 37 37 H 1.09001 * 109.47036 * 304.99674 * 12 11 10 38 38 H 1.08995 * 109.47386 * 185.00081 * 12 11 10 39 39 H 1.09002 * 109.47477 * 300.00589 * 14 13 12 40 40 H 1.09004 * 109.46709 * 60.00273 * 14 13 12 41 41 H 0.96996 * 119.99989 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5248 1.3266 0.0604 5 8 4.0175 0.5576 -1.0402 6 6 3.5250 -0.7847 -1.0708 7 6 1.9959 -0.7601 -1.1427 8 1 1.6828 -0.2849 -2.0722 9 6 1.4591 -2.1920 -1.0949 10 7 1.7741 -2.7898 0.2094 11 6 1.2732 -4.1684 0.2916 12 6 1.6189 -4.7559 1.6613 13 8 0.9178 -4.0376 2.6784 14 6 1.1715 -4.5095 4.0032 15 6 0.3848 -3.6852 4.9894 16 1 -0.2461 -2.8815 4.6395 17 6 0.4698 -3.9576 6.3383 18 7 1.2377 -4.9365 6.7644 19 14 -0.5059 -2.9362 7.5606 20 1 -1.8383 -3.5569 7.7723 21 1 0.2244 -2.8792 8.8524 22 1 -0.6795 -1.5605 7.0291 23 1 -0.3633 -1.0132 0.1721 24 1 -0.3634 0.6556 0.7913 25 1 -0.3633 0.3575 -0.9634 26 1 1.6132 1.9092 0.8682 27 1 1.6827 1.8826 -0.9109 28 1 3.8384 0.8646 0.9965 29 1 3.9226 2.3398 0.0035 30 1 3.8386 -1.3082 -0.1676 31 1 3.9223 -1.2983 -1.9464 32 1 1.9235 -2.7808 -1.8860 33 1 0.3785 -2.1800 -1.2376 34 1 1.4092 -2.2266 0.9629 35 1 1.7367 -4.7705 -0.4899 36 1 0.1914 -4.1704 0.1584 37 1 2.6923 -4.6727 1.8320 38 1 1.3268 -5.8056 1.6907 39 1 0.8697 -5.5541 4.0809 40 1 2.2356 -4.4215 4.2226 41 1 1.2972 -5.1284 7.7133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704024773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:28 Heat of formation + Delta-G solvation = -86.168193 kcal Electronic energy + Delta-G solvation = -20082.023705 eV Core-core repulsion = 16997.072243 eV Total energy + Delta-G solvation = -3084.951462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86662 -37.21302 -36.20347 -34.79872 -32.72718 -31.70453 -29.15162 -28.37172 -26.77354 -25.11440 -24.18073 -22.41925 -22.32074 -21.31315 -19.81434 -16.64363 -16.46033 -16.31290 -15.83849 -15.66859 -15.20068 -15.00481 -14.77003 -14.58396 -14.20895 -13.80689 -13.44051 -13.33745 -12.59806 -12.54051 -12.30820 -11.96666 -11.81910 -11.60888 -11.44181 -11.12990 -11.03697 -10.79123 -10.70731 -10.60091 -10.43062 -9.98732 -9.65943 -9.07618 -8.79206 -8.43594 -8.13553 -8.09846 -6.08426 -4.09839 3.31216 3.36248 3.41482 3.66564 3.84490 4.36813 4.40422 4.76717 4.83437 4.87953 4.98976 5.11248 5.20562 5.24174 5.28103 5.39075 5.45287 5.49583 5.53989 5.61131 5.67643 5.74460 5.76913 5.83448 5.90140 6.06246 6.11882 6.25313 6.38961 6.85747 6.88021 7.11193 7.14928 7.30676 7.47652 7.81317 7.83294 8.18586 8.61620 9.03460 9.54823 11.03190 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.004682 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.019918 B = 5979.457306 C = 6637.792483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.021 3.979 4 C 0.063 3.937 5 O -0.392 6.392 6 C 0.073 3.927 7 C 0.053 3.947 8 H 0.047 0.953 9 C 0.066 3.934 10 N -0.679 5.679 11 C 0.065 3.935 12 C 0.063 3.937 13 O -0.398 6.398 14 C 0.198 3.802 15 C -0.512 4.512 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.023 0.977 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.367 0.633 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 9.035 -16.702 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.108 4.108 4 C -0.014 4.014 5 O -0.310 6.310 6 C -0.004 4.004 7 C -0.056 4.056 8 H 0.065 0.935 9 C -0.065 4.065 10 N -0.314 5.314 11 C -0.065 4.065 12 C -0.015 4.015 13 O -0.318 6.318 14 C 0.123 3.877 15 C -0.551 4.551 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.190 0.810 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.522 8.755 -16.448 18.803 hybrid contribution -1.835 0.584 0.347 1.957 sum 0.687 9.339 -16.101 18.626 Atomic orbital electron populations 1.22431 0.86959 1.03067 1.00066 1.62119 1.08029 1.13145 1.42254 1.22781 0.96714 0.89857 1.01403 1.22646 0.92046 0.96214 0.90511 1.87937 1.70104 1.24504 1.48500 1.22676 0.91030 0.83191 1.03536 1.22391 0.97015 0.94406 0.91804 0.93521 1.21902 0.97748 0.93127 0.93699 1.60428 1.63687 1.03169 1.04157 1.21950 0.97523 0.90392 0.96589 1.22275 0.96508 0.94519 0.88201 1.87792 1.68605 1.58522 1.16874 1.20159 0.95925 0.94475 0.77097 1.21046 1.26900 1.16709 0.90405 0.91661 1.24938 0.95763 0.95590 0.98200 1.69964 1.38746 1.29896 1.15199 0.86357 0.79691 0.80488 0.80057 1.20553 1.21088 1.19657 0.90901 0.90999 0.95865 0.89517 0.94441 0.91761 0.88798 0.90278 0.88963 0.90801 0.95293 0.81049 0.90916 0.95135 0.93587 0.94329 0.97938 0.97635 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.84 60.06 0.53 0.79 16 2 N -0.53 -6.61 3.91 -234.59 -0.92 -7.52 16 3 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 4 C 0.06 0.70 7.01 37.20 0.26 0.96 16 5 O -0.39 -5.04 10.83 -35.23 -0.38 -5.42 16 6 C 0.07 0.88 6.22 37.21 0.23 1.11 16 7 C 0.05 0.62 2.34 -67.61 -0.16 0.46 16 8 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 9 C 0.07 0.78 4.75 -3.83 -0.02 0.76 16 10 N -0.68 -10.08 5.90 -113.78 -0.67 -10.76 16 11 C 0.06 0.98 6.11 -3.82 -0.02 0.95 16 12 C 0.06 1.18 6.28 37.16 0.23 1.42 16 13 O -0.40 -9.57 9.85 -35.23 -0.35 -9.92 16 14 C 0.20 5.48 5.69 36.00 0.20 5.68 16 15 C -0.51 -15.15 9.43 -34.44 -0.32 -15.48 16 16 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 24 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 25 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 26 H 0.09 0.87 8.09 -51.93 -0.42 0.44 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.10 7.68 -51.93 -0.40 0.70 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.34 6.82 -51.93 -0.35 -0.01 16 34 H 0.37 6.39 6.92 -39.29 -0.27 6.12 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -31.29 328.29 -8.07 -39.36 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.23 Total: 0.38 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.82 Total: -1.61 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.85 Total: -44.64 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.73 Total: -15.34 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.29 -8.07 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704024773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.812 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds