Wall clock time and date at job start Mon Mar 30 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99816 * 2 1 4 4 C 1.50692 * 109.47182 * 293.95639 * 3 2 1 5 5 O 1.21281 * 120.00617 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99906 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00359 * 180.02562 * 6 4 3 8 8 C 1.50692 * 109.47340 * 179.97438 * 7 6 4 9 9 H 1.08003 * 120.00534 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00105 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99773 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47201 * 89.99466 * 12 10 8 14 14 H 1.48499 * 109.47247 * 209.99519 * 12 10 8 15 15 H 1.48506 * 109.47345 * 329.99789 * 12 10 8 16 16 C 1.46901 * 111.00146 * 123.95858 * 2 1 3 17 17 H 1.08997 * 110.45327 * 192.95972 * 16 2 1 18 18 C 1.54475 * 110.50923 * 315.71295 * 16 2 1 19 19 O 1.44425 * 104.80205 * 142.62464 * 18 16 2 20 20 C 1.44634 * 105.37050 * 319.56266 * 19 18 16 21 21 C 1.54480 * 104.69667 * 40.34908 * 20 19 18 22 22 H 1.08998 * 110.51654 * 94.90312 * 21 20 19 23 23 O 1.42906 * 110.51485 * 217.47763 * 21 20 19 24 24 H 1.09002 * 109.46859 * 306.77076 * 1 2 3 25 25 H 1.08995 * 109.47534 * 66.76855 * 1 2 3 26 26 H 1.09006 * 109.47153 * 186.77257 * 1 2 3 27 27 H 1.08997 * 109.46688 * 53.95936 * 3 2 1 28 28 H 1.09005 * 109.46827 * 173.95597 * 3 2 1 29 29 H 0.97006 * 119.99831 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.46968 * 300.00142 * 7 6 4 31 31 H 1.08998 * 109.47347 * 59.99578 * 7 6 4 32 32 H 0.97001 * 119.99908 * 179.97438 * 11 10 8 33 33 H 1.09004 * 110.37208 * 261.45640 * 18 16 2 34 34 H 1.09006 * 110.37644 * 23.79327 * 18 16 2 35 35 H 1.09003 * 110.34429 * 281.59463 * 20 19 18 36 36 H 1.09005 * 110.51106 * 159.18521 * 20 19 18 37 37 H 0.96704 * 113.99561 * 296.69596 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2983 5 8 1.0054 1.4454 -2.1410 6 7 2.0188 3.3199 -1.5236 7 6 1.6698 3.9771 -2.7855 8 6 2.2099 5.3839 -2.7855 9 1 2.7587 5.7517 -1.9311 10 6 2.0044 6.2013 -3.8767 11 7 2.4753 7.4292 -3.8765 12 14 1.0558 5.5650 -5.3548 13 1 -0.3897 5.8554 -5.1777 14 1 1.5482 6.2354 -6.5850 15 1 1.2547 4.0984 -5.4768 16 6 1.9955 -0.7661 1.1375 17 1 3.0611 -0.5755 1.2645 18 6 1.2225 -0.4177 2.4288 19 8 1.1177 -1.6677 3.1447 20 6 0.8373 -2.6651 2.1354 21 6 1.7353 -2.2763 0.9401 22 1 2.6723 -2.8323 0.9695 23 8 1.0546 -2.5098 -0.2945 24 1 -0.3633 0.6152 0.8232 25 1 -0.3634 0.4053 -0.9443 26 1 -0.3634 -1.0205 0.1212 27 1 1.5611 1.9273 0.8310 28 1 3.0797 1.3444 0.1082 29 1 2.5248 3.8009 -0.8501 30 1 2.1033 3.4210 -3.6167 31 1 0.5855 4.0046 -2.8931 32 1 2.3311 8.0041 -4.6443 33 1 1.7779 0.3118 3.0184 34 1 0.2311 -0.0351 2.1862 35 1 -0.2135 -2.6286 1.8482 36 1 1.0981 -3.6593 2.4983 37 1 0.8399 -3.4389 -0.4556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708734956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:02 Heat of formation + Delta-G solvation = -101.391707 kcal Electronic energy + Delta-G solvation = -19812.988606 eV Core-core repulsion = 16591.543908 eV Total energy + Delta-G solvation = -3221.444698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51744 -38.88765 -36.38399 -35.97213 -34.19168 -32.34540 -30.29887 -28.99922 -28.43974 -27.16025 -24.87732 -22.91184 -21.82470 -20.20853 -19.77468 -18.04414 -17.39633 -16.69329 -16.07532 -15.97398 -15.54218 -15.41215 -14.94488 -14.58097 -14.32197 -13.80087 -13.62381 -13.31680 -13.03453 -12.76716 -12.41958 -12.30705 -11.89206 -11.74008 -11.63326 -11.32938 -10.99557 -10.96993 -10.73438 -10.34161 -9.95746 -9.93595 -9.48445 -9.11665 -8.76484 -8.19060 -8.04647 -6.20755 -4.22841 3.26264 3.27079 3.30667 3.34958 3.43854 3.74696 4.07210 4.24965 4.30332 4.34748 4.43939 4.68279 4.84917 4.92185 5.14593 5.22285 5.28873 5.33394 5.36518 5.41135 5.44673 5.54795 5.69898 5.83615 6.32630 6.39087 6.79632 6.97650 7.05584 7.10057 7.27519 7.41829 7.50105 8.16439 8.54488 8.76918 8.99992 9.39805 10.91217 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.048021 B = 0.003998 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.942358 B = 7002.304335 C = 7348.628126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.489 5.489 3 C 0.030 3.970 4 C 0.501 3.499 5 O -0.537 6.537 6 N -0.709 5.709 7 C 0.222 3.778 8 C -0.543 4.543 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.893 5.893 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.260 1.260 16 C 0.057 3.943 17 H 0.102 0.898 18 C 0.002 3.998 19 O -0.369 6.369 20 C 0.009 3.991 21 C 0.080 3.920 22 H 0.074 0.926 23 O -0.526 6.526 24 H 0.016 0.984 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.395 0.605 30 H 0.025 0.975 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 -18.991 12.855 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.212 5.212 3 C -0.101 4.101 4 C 0.285 3.715 5 O -0.415 6.415 6 N -0.359 5.359 7 C 0.100 3.900 8 C -0.581 4.581 9 H 0.097 0.903 10 C -0.127 4.127 11 N -0.531 5.531 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.184 1.184 16 C -0.053 4.053 17 H 0.120 0.880 18 C -0.076 4.076 19 O -0.287 6.287 20 C -0.068 4.068 21 C 0.020 3.980 22 H 0.092 0.908 23 O -0.329 6.329 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.228 0.772 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.914 -18.840 11.852 22.340 hybrid contribution -0.461 -0.018 0.217 0.510 sum -2.375 -18.859 12.068 22.515 Atomic orbital electron populations 1.22706 0.86164 1.02026 1.01913 1.61611 1.09302 1.11212 1.39095 1.22132 1.01786 0.89828 0.96375 1.20281 0.80500 0.82186 0.88485 1.90629 1.40079 1.64247 1.46518 1.46165 1.55957 1.12481 1.21252 1.19457 0.95797 0.92947 0.81788 1.21104 1.37155 0.95094 1.04772 0.90291 1.24802 0.95007 0.94541 0.98304 1.69881 1.45218 1.06891 1.31063 0.86809 0.80531 0.80148 0.82167 1.19883 1.20912 1.18444 1.23233 1.00301 0.92835 0.88969 0.87976 1.24408 1.01611 0.87981 0.93640 1.89158 1.92580 1.17104 1.29870 1.24342 0.99782 0.93485 0.89191 1.23113 0.94894 0.95659 0.84352 0.90844 1.86879 1.78528 1.30127 1.37392 0.96547 0.89006 0.90339 0.92362 0.88224 0.77177 0.95711 0.96289 0.92276 0.88693 0.90613 0.91342 0.88773 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 7.64 60.06 0.46 0.73 16 2 N -0.49 -6.77 3.92 -234.44 -0.92 -7.69 16 3 C 0.03 0.41 5.27 -4.98 -0.03 0.39 16 4 C 0.50 9.59 7.59 -10.99 -0.08 9.50 16 5 O -0.54 -12.34 14.31 5.56 0.08 -12.26 16 6 N -0.71 -14.35 5.55 -61.48 -0.34 -14.69 16 7 C 0.22 5.51 4.50 -5.20 -0.02 5.49 16 8 C -0.54 -14.97 9.83 -34.44 -0.34 -15.30 16 9 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 10 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 11 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 12 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 16 C 0.06 0.60 3.15 -66.15 -0.21 0.40 16 17 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 18 C 0.00 0.02 6.80 37.93 0.26 0.28 16 19 O -0.37 -3.97 11.65 -35.23 -0.41 -4.38 16 20 C 0.01 0.08 7.31 37.93 0.28 0.35 16 21 C 0.08 0.73 4.15 -25.16 -0.10 0.63 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 O -0.53 -5.42 10.31 -35.23 -0.36 -5.79 16 24 H 0.02 0.21 6.20 -51.93 -0.32 -0.11 16 25 H 0.09 1.60 6.03 -51.93 -0.31 1.28 16 26 H 0.08 1.01 5.72 -51.93 -0.30 0.72 16 27 H 0.06 0.69 7.98 -51.93 -0.41 0.28 16 28 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16 29 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.80 5.14 -51.93 -0.27 0.54 16 35 H 0.07 0.56 7.95 -51.93 -0.41 0.15 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.37 2.07 9.12 45.56 0.42 2.49 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -34.41 297.16 -5.64 -40.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.38 Total: 4.63 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.11 Total: 4.55 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.49 Total: -48.22 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.69 Total: -22.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.41 -5.64 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708734956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.340 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds