Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00080 * 2 1 4 4 C 1.50696 * 109.47174 * 293.95379 * 3 2 1 5 5 O 1.21286 * 119.99605 * 0.27535 * 4 3 2 6 6 N 1.34767 * 120.00482 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00408 * 180.02562 * 6 4 3 8 8 C 1.50707 * 109.46973 * 180.02562 * 7 6 4 9 9 H 1.08003 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99568 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00590 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99608 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47556 * 59.99749 * 12 10 8 14 14 H 1.48504 * 109.46943 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46677 * 299.99185 * 12 10 8 16 16 C 1.46898 * 111.00079 * 123.95301 * 2 1 3 17 17 H 1.08997 * 110.45649 * 294.63948 * 16 2 1 18 18 C 1.54479 * 110.51141 * 57.24408 * 16 2 1 19 19 O 1.44427 * 104.80418 * 142.62484 * 18 16 2 20 20 C 1.44422 * 105.27204 * 319.48660 * 19 18 16 21 21 C 1.54477 * 104.80476 * 40.51632 * 20 19 18 22 22 H 1.09002 * 110.51383 * 217.37372 * 21 20 19 23 23 O 1.42902 * 110.51432 * 94.66335 * 21 20 19 24 24 H 1.08994 * 109.47038 * 65.65335 * 1 2 3 25 25 H 1.08995 * 109.46840 * 185.65135 * 1 2 3 26 26 H 1.09004 * 109.47120 * 305.65316 * 1 2 3 27 27 H 1.08997 * 109.46918 * 173.95260 * 3 2 1 28 28 H 1.09002 * 109.46798 * 53.95461 * 3 2 1 29 29 H 0.97004 * 119.99479 * 0.02562 * 6 4 3 30 30 H 1.08996 * 109.46811 * 299.99557 * 7 6 4 31 31 H 1.08997 * 109.47507 * 60.00183 * 7 6 4 32 32 H 0.97004 * 120.00515 * 179.97438 * 11 10 8 33 33 H 1.08998 * 110.37446 * 261.45483 * 18 16 2 34 34 H 1.09004 * 110.37433 * 23.79019 * 18 16 2 35 35 H 1.08998 * 110.37050 * 159.34113 * 20 19 18 36 36 H 1.08995 * 110.37759 * 281.67647 * 20 19 18 37 37 H 0.96693 * 114.00085 * 65.35783 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0008 1.4471 -2.1388 6 7 2.0180 3.3201 -1.5233 7 6 1.6690 3.9772 -2.7854 8 6 2.2092 5.3841 -2.7854 9 1 2.7573 5.7521 -1.9306 10 6 2.0028 6.2017 -3.8762 11 7 1.3350 5.7538 -4.9168 12 14 2.6731 7.9454 -3.8765 13 1 4.1504 7.9080 -3.7306 14 1 2.3192 8.6114 -5.1558 15 1 2.0827 8.7027 -2.7438 16 6 1.9955 -0.7659 1.1376 17 1 1.7345 -0.2798 2.0776 18 6 1.4586 -2.2142 1.1099 19 8 2.5647 -3.0264 1.5601 20 6 3.7342 -2.4593 0.9305 21 6 3.5270 -0.9309 1.0169 22 1 3.8935 -0.4441 0.1132 23 8 4.1802 -0.4015 2.1724 24 1 -0.3633 0.4236 -0.9362 25 1 -0.3633 -1.0226 0.1012 26 1 -0.3633 0.5990 0.8351 27 1 3.0797 1.3444 0.1083 28 1 1.5611 1.9273 0.8309 29 1 2.5234 3.8013 -0.8495 30 1 2.1034 3.4216 -3.6164 31 1 0.5847 4.0040 -2.8934 32 1 1.1895 6.3291 -5.6841 33 1 0.6112 -2.3178 1.7876 34 1 1.1710 -2.4930 0.0961 35 1 4.6349 -2.7511 1.4705 36 1 3.7958 -2.7757 -0.1107 37 1 5.1438 -0.4790 2.1495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708734957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -117.129635 kcal Electronic energy + Delta-G solvation = -19633.360513 eV Core-core repulsion = 16411.233368 eV Total energy + Delta-G solvation = -3222.127145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28690 -38.83915 -36.31199 -36.20816 -34.13557 -32.35199 -30.24817 -29.35620 -28.06321 -26.79570 -24.57588 -22.67621 -22.36021 -20.45471 -19.61449 -17.76972 -17.28947 -16.72725 -16.52393 -15.76521 -15.50617 -15.19614 -14.94743 -14.48809 -14.11272 -14.00367 -13.53377 -13.20883 -13.06297 -12.57079 -12.41251 -12.02847 -11.97292 -11.81415 -11.49950 -11.24376 -11.13230 -10.98707 -10.84975 -10.41456 -10.32371 -9.84165 -9.42801 -9.06553 -8.74579 -8.35066 -7.88075 -6.18074 -4.25278 3.24049 3.28378 3.29858 3.33436 3.36144 3.72103 3.91854 4.25968 4.36544 4.44975 4.52479 4.79509 5.01409 5.17875 5.21806 5.21958 5.34116 5.35843 5.43563 5.51850 5.54402 5.58192 5.58639 5.71940 6.23352 6.40596 6.80677 6.98603 7.29584 7.35378 7.42948 7.50181 7.65462 7.95522 8.61174 8.76943 9.09712 9.41562 10.92035 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.003867 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.500462 B = 7238.592067 C = 7644.532071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.512 5.512 3 C 0.033 3.967 4 C 0.500 3.500 5 O -0.539 6.539 6 N -0.714 5.714 7 C 0.252 3.748 8 C -0.545 4.545 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.055 3.945 17 H 0.068 0.932 18 C 0.054 3.946 19 O -0.371 6.371 20 C 0.020 3.980 21 C 0.071 3.929 22 H 0.086 0.914 23 O -0.559 6.559 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.390 0.610 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -12.806 13.300 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.238 5.238 3 C -0.098 4.098 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.363 5.363 7 C 0.131 3.869 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.054 4.054 17 H 0.086 0.914 18 C -0.023 4.023 19 O -0.289 6.289 20 C -0.057 4.057 21 C 0.012 3.988 22 H 0.104 0.896 23 O -0.365 6.365 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.222 0.778 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.133 -13.460 12.364 18.544 hybrid contribution 0.949 1.737 0.666 2.088 sum 4.082 -11.723 13.030 17.997 Atomic orbital electron populations 1.22639 0.85705 1.01626 1.03141 1.61737 1.09268 1.12559 1.40231 1.22093 1.01820 0.89183 0.96718 1.20230 0.80756 0.82462 0.88216 1.90622 1.40021 1.64412 1.46676 1.46453 1.55666 1.12376 1.21819 1.19086 0.96470 0.91471 0.79878 1.21195 1.36906 0.97222 1.02987 0.91965 1.24945 0.94916 0.98973 0.95116 1.69960 1.39435 1.36888 1.06001 0.86477 0.79357 0.83622 0.77460 1.20060 1.21050 1.20070 1.22951 0.92833 0.95797 0.93838 0.91419 1.23507 0.90239 0.87500 1.01022 1.89133 1.16269 1.53606 1.69875 1.24118 0.90160 0.92683 0.98743 1.23201 0.93033 0.93484 0.89097 0.89634 1.86527 1.24109 1.83667 1.42212 0.88240 0.91533 0.95844 0.88351 0.92108 0.77798 0.95525 0.95588 0.92371 0.88759 0.90433 0.88741 0.90983 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.01 60.06 0.54 0.76 16 2 N -0.51 -7.10 4.28 -234.44 -1.00 -8.11 16 3 C 0.03 0.48 5.24 -4.97 -0.03 0.45 16 4 C 0.50 9.74 7.59 -10.99 -0.08 9.66 16 5 O -0.54 -12.55 14.29 5.55 0.08 -12.47 16 6 N -0.71 -14.77 5.55 -61.47 -0.34 -15.12 16 7 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 8 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 9 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 12 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.05 0.65 2.64 -66.15 -0.17 0.47 16 17 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 18 C 0.05 0.59 5.87 37.93 0.22 0.82 16 19 O -0.37 -4.45 11.65 -35.23 -0.41 -4.87 16 20 C 0.02 0.20 7.38 37.93 0.28 0.48 16 21 C 0.07 0.75 3.51 -25.16 -0.09 0.66 16 22 H 0.09 0.92 6.85 -51.93 -0.36 0.56 16 23 O -0.56 -5.57 13.30 -35.23 -0.47 -6.03 16 24 H 0.10 1.65 5.99 -51.93 -0.31 1.34 16 25 H 0.07 0.74 6.49 -51.93 -0.34 0.40 16 26 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 27 H 0.10 1.27 6.43 -51.93 -0.33 0.94 16 28 H 0.06 0.80 8.07 -51.93 -0.42 0.39 16 29 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.85 7.63 -51.93 -0.40 0.46 16 35 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.38 2.04 9.12 45.56 0.42 2.45 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -33.21 306.16 -6.14 -39.35 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.56 Total: 5.61 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.23 Total: 6.56 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.61 Total: -48.43 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.80 Total: -23.37 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.21 -6.14 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708734957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.779 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds