Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00080 * 2 1 4 4 C 1.50696 * 109.47174 * 293.95379 * 3 2 1 5 5 O 1.21286 * 119.99605 * 0.27535 * 4 3 2 6 6 N 1.34767 * 120.00482 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00408 * 180.02562 * 6 4 3 8 8 C 1.50707 * 109.46973 * 180.02562 * 7 6 4 9 9 H 1.08003 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99568 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00590 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99608 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47556 * 59.99749 * 12 10 8 14 14 H 1.48504 * 109.46943 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46677 * 299.99185 * 12 10 8 16 16 C 1.46898 * 111.00079 * 123.95301 * 2 1 3 17 17 H 1.08997 * 110.45649 * 294.63948 * 16 2 1 18 18 C 1.54479 * 110.51141 * 57.24408 * 16 2 1 19 19 O 1.44427 * 104.80418 * 142.62484 * 18 16 2 20 20 C 1.44422 * 105.27204 * 319.48660 * 19 18 16 21 21 C 1.54477 * 104.80476 * 40.51632 * 20 19 18 22 22 H 1.09002 * 110.51383 * 217.37372 * 21 20 19 23 23 O 1.42902 * 110.51432 * 94.66335 * 21 20 19 24 24 H 1.08994 * 109.47038 * 65.65335 * 1 2 3 25 25 H 1.08995 * 109.46840 * 185.65135 * 1 2 3 26 26 H 1.09004 * 109.47120 * 305.65316 * 1 2 3 27 27 H 1.08997 * 109.46918 * 173.95260 * 3 2 1 28 28 H 1.09002 * 109.46798 * 53.95461 * 3 2 1 29 29 H 0.97004 * 119.99479 * 0.02562 * 6 4 3 30 30 H 1.08996 * 109.46811 * 299.99557 * 7 6 4 31 31 H 1.08997 * 109.47507 * 60.00183 * 7 6 4 32 32 H 0.97004 * 120.00515 * 179.97438 * 11 10 8 33 33 H 1.08998 * 110.37446 * 261.45483 * 18 16 2 34 34 H 1.09004 * 110.37433 * 23.79019 * 18 16 2 35 35 H 1.08998 * 110.37050 * 159.34113 * 20 19 18 36 36 H 1.08995 * 110.37759 * 281.67647 * 20 19 18 37 37 H 0.96693 * 114.00085 * 65.35783 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0008 1.4471 -2.1388 6 7 2.0180 3.3201 -1.5233 7 6 1.6690 3.9772 -2.7854 8 6 2.2092 5.3841 -2.7854 9 1 2.7573 5.7521 -1.9306 10 6 2.0028 6.2017 -3.8762 11 7 1.3350 5.7538 -4.9168 12 14 2.6731 7.9454 -3.8765 13 1 4.1504 7.9080 -3.7306 14 1 2.3192 8.6114 -5.1558 15 1 2.0827 8.7027 -2.7438 16 6 1.9955 -0.7659 1.1376 17 1 1.7345 -0.2798 2.0776 18 6 1.4586 -2.2142 1.1099 19 8 2.5647 -3.0264 1.5601 20 6 3.7342 -2.4593 0.9305 21 6 3.5270 -0.9309 1.0169 22 1 3.8935 -0.4441 0.1132 23 8 4.1802 -0.4015 2.1724 24 1 -0.3633 0.4236 -0.9362 25 1 -0.3633 -1.0226 0.1012 26 1 -0.3633 0.5990 0.8351 27 1 3.0797 1.3444 0.1083 28 1 1.5611 1.9273 0.8309 29 1 2.5234 3.8013 -0.8495 30 1 2.1034 3.4216 -3.6164 31 1 0.5847 4.0040 -2.8934 32 1 1.1895 6.3291 -5.6841 33 1 0.6112 -2.3178 1.7876 34 1 1.1710 -2.4930 0.0961 35 1 4.6349 -2.7511 1.4705 36 1 3.7958 -2.7757 -0.1107 37 1 5.1438 -0.4790 2.1495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708734957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -147.158279 kcal Electronic energy + Delta-G solvation = -19634.662653 eV Core-core repulsion = 16411.233368 eV Total energy + Delta-G solvation = -3223.429285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27407 -40.29790 -37.40820 -37.03578 -36.03392 -34.34565 -31.29360 -30.45541 -29.34304 -28.30628 -25.87572 -24.23386 -23.48024 -21.59836 -21.10849 -18.99119 -18.55003 -17.88912 -17.46576 -17.19638 -16.99315 -16.54117 -16.34751 -15.94119 -15.42115 -15.12198 -14.87285 -14.29308 -14.21905 -14.03963 -13.81361 -13.67600 -13.19973 -12.93650 -12.76923 -12.71244 -12.52576 -12.44040 -12.23073 -11.94602 -11.50506 -11.19162 -10.78617 -10.71982 -10.59632 -9.81879 -9.42874 -8.28653 -6.45385 1.43558 1.47389 1.55589 1.77027 2.16270 2.40116 2.79793 2.96701 3.06222 3.27697 3.57796 3.72781 3.91874 3.97793 4.13862 4.24714 4.30737 4.44425 4.48909 4.52738 4.62600 4.72975 4.76293 4.79826 5.09562 5.12285 5.25325 5.49247 5.57279 5.68558 5.78627 5.85801 6.00083 6.65507 6.82574 6.93457 7.24194 7.51517 8.83221 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.003867 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.500462 B = 7238.592067 C = 7644.532071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.526 5.526 3 C 0.048 3.952 4 C 0.497 3.503 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.269 3.731 8 C -0.558 4.558 9 H 0.083 0.917 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.984 3.016 13 H -0.262 1.262 14 H -0.286 1.286 15 H -0.263 1.263 16 C 0.056 3.944 17 H 0.067 0.933 18 C 0.056 3.944 19 O -0.388 6.388 20 C 0.019 3.981 21 C 0.075 3.925 22 H 0.083 0.917 23 O -0.571 6.571 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.407 0.593 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.269 0.731 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -12.357 15.418 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.252 5.252 3 C -0.082 4.082 4 C 0.284 3.716 5 O -0.461 6.461 6 N -0.360 5.360 7 C 0.146 3.854 8 C -0.595 4.595 9 H 0.102 0.898 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.807 3.193 13 H -0.186 1.186 14 H -0.211 1.211 15 H -0.187 1.187 16 C -0.053 4.053 17 H 0.085 0.915 18 C -0.021 4.021 19 O -0.306 6.306 20 C -0.058 4.058 21 C 0.015 3.985 22 H 0.101 0.899 23 O -0.380 6.380 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.054 0.946 27 H 0.139 0.861 28 H 0.100 0.900 29 H 0.243 0.757 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.686 -13.028 14.538 20.076 hybrid contribution 0.469 1.505 0.014 1.576 sum 5.155 -11.523 14.552 19.264 Atomic orbital electron populations 1.22548 0.85774 1.02964 1.01568 1.61666 1.09461 1.12244 1.41847 1.21964 1.03255 0.89472 0.93554 1.21171 0.79232 0.81671 0.89569 1.90614 1.41604 1.65228 1.48658 1.46184 1.56239 1.13115 1.20475 1.18509 0.93734 0.91862 0.81299 1.21602 1.36865 0.97277 1.03800 0.89849 1.26046 0.94922 1.04017 0.94494 1.70127 1.40988 1.38883 1.06939 0.85225 0.79117 0.77352 0.77632 1.18634 1.21132 1.18709 1.22967 0.93903 0.95759 0.92628 0.91503 1.23538 0.90556 0.86798 1.01243 1.89118 1.17110 1.54124 1.70272 1.24260 0.90273 0.92044 0.99260 1.23094 0.92181 0.94004 0.89179 0.89932 1.86482 1.26023 1.83636 1.41822 0.91914 0.89364 0.94649 0.86107 0.89968 0.75728 0.99465 0.99495 0.92253 0.87253 0.90881 0.86616 0.90667 0.74839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.01 127.69 1.15 1.65 16 2 N -0.53 -13.89 4.28 -895.65 -3.83 -17.73 16 3 C 0.05 1.32 5.24 85.55 0.45 1.76 16 4 C 0.50 19.50 7.59 87.66 0.67 20.17 16 5 O -0.58 -28.06 14.29 -3.05 -0.04 -28.11 16 6 N -0.71 -29.52 5.55 -466.80 -2.59 -32.11 16 7 C 0.27 14.66 5.43 85.64 0.46 15.12 16 8 C -0.56 -30.11 9.28 25.60 0.24 -29.87 16 9 H 0.08 4.05 7.60 -2.91 -0.02 4.02 16 10 C 0.00 0.27 5.46 84.65 0.46 0.73 16 11 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 12 Si 0.98 41.94 29.54 68.60 2.03 43.96 16 13 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 14 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 C 0.06 1.20 2.64 45.93 0.12 1.32 16 17 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 18 C 0.06 1.11 5.87 72.48 0.43 1.53 16 19 O -0.39 -8.52 11.65 -148.98 -1.74 -10.26 16 20 C 0.02 0.31 7.38 72.48 0.53 0.85 16 21 C 0.08 1.39 3.51 31.61 0.11 1.50 16 22 H 0.08 1.58 6.85 -2.39 -0.02 1.57 16 23 O -0.57 -9.65 13.30 -148.98 -1.98 -11.63 16 24 H 0.06 2.14 5.99 -2.39 -0.01 2.12 16 25 H 0.09 1.86 6.49 -2.39 -0.02 1.85 16 26 H 0.03 0.82 8.07 -2.39 -0.02 0.81 16 27 H 0.12 2.79 6.43 -2.39 -0.02 2.78 16 28 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.51 7.63 -2.38 -0.02 1.49 16 35 H 0.12 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.40 3.04 9.12 -74.06 -0.68 2.36 16 Total: -1.00 -73.63 306.16 -3.60 -77.23 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.35 Total: 19.53 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 4.62 Total: 14.77 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -6.14 Total: -105.50 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -3.76 Total: -50.00 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -73.63 -3.60 -77.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708734957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.927 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds