Wall clock time and date at job start Mon Mar 30 2020 04:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36051 * 126.02497 * 2 1 4 4 C 1.35589 * 107.63975 * 180.02562 * 3 2 1 5 5 N 1.40907 * 126.08405 * 180.02562 * 4 3 2 6 6 C 1.40679 * 107.83035 * 0.02562 * 4 3 2 7 7 O 1.35971 * 125.87245 * 180.02562 * 6 4 3 8 8 C 1.35619 * 118.00123 * 175.94050 * 7 6 4 9 9 C 1.39371 * 119.81777 * 353.60568 * 8 7 6 10 10 C 1.36403 * 120.17613 * 180.02562 * 9 8 7 11 11 C 1.40853 * 119.81882 * 359.97438 * 10 9 8 12 12 C 1.41177 * 120.17704 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00198 * 324.23144 * 12 11 10 14 14 C 1.39882 * 120.00299 * 144.22795 * 12 11 10 15 15 N 1.30884 * 119.99452 * 6.65917 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 186.65652 * 14 12 11 17 17 H 1.48497 * 109.47172 * 59.99845 * 16 14 12 18 18 H 1.48500 * 109.47297 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47394 * 300.00150 * 16 14 12 20 20 C 1.40855 * 119.64902 * 0.25272 * 11 10 9 21 21 C 1.36403 * 119.81549 * 359.46584 * 20 11 10 22 22 N 1.31148 * 108.25418 * 0.26313 * 6 4 3 23 23 H 1.08999 * 109.47199 * 90.00194 * 1 2 3 24 24 H 1.09002 * 109.47075 * 209.99786 * 1 2 3 25 25 H 1.08994 * 109.47788 * 330.00091 * 1 2 3 26 26 H 1.08003 * 126.17699 * 0.05645 * 3 2 1 27 27 H 0.96997 * 119.99922 * 179.97438 * 5 4 3 28 28 H 0.97000 * 119.99976 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.91401 * 359.97438 * 9 8 7 30 30 H 1.08001 * 120.09492 * 179.97438 * 10 9 8 31 31 H 0.97002 * 119.99474 * 180.02562 * 15 14 12 32 32 H 1.08006 * 120.09039 * 179.74893 * 20 11 10 33 33 H 1.08003 * 119.90756 * 180.24955 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2651 1.1003 0.0000 4 6 3.5518 0.6727 -0.0006 5 7 4.6985 1.4915 -0.0003 6 6 3.5382 -0.7341 -0.0015 7 8 4.6322 -1.5415 -0.0018 8 6 4.4352 -2.8806 0.0820 9 6 3.1524 -3.3802 0.2989 10 6 2.9460 -4.7258 0.3850 11 6 4.0337 -5.6110 0.2534 12 6 3.8288 -7.0050 0.3417 13 1 3.0917 -7.4003 1.0250 14 6 4.5804 -7.8744 -0.4558 15 7 5.5613 -7.4088 -1.1866 16 14 4.1841 -9.6997 -0.4777 17 1 2.7893 -9.8978 -0.9470 18 1 5.1196 -10.3984 -1.3952 19 1 4.3288 -10.2542 0.8923 20 6 5.3278 -5.0978 0.0391 21 6 5.5166 -3.7499 -0.0503 22 7 2.2888 -1.1328 -0.0073 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.9350 2.1287 0.0009 27 1 5.5814 1.0898 -0.0004 28 1 4.6050 2.4570 0.0000 29 1 2.3195 -2.7001 0.4000 30 1 1.9514 -5.1114 0.5535 31 1 6.0823 -8.0116 -1.7400 32 1 6.1675 -5.7699 -0.0588 33 1 6.5076 -3.3549 -0.2186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231663005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:19 Heat of formation + Delta-G solvation = 74.699482 kcal Electronic energy + Delta-G solvation = -18407.177609 eV Core-core repulsion = 15435.251807 eV Total energy + Delta-G solvation = -2971.925802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36211 -40.41535 -38.38710 -35.47483 -35.06819 -33.16228 -31.59421 -31.04764 -29.60350 -27.49272 -26.25494 -23.54147 -23.25423 -21.81726 -21.34077 -19.37224 -18.77263 -17.89917 -17.13974 -17.02266 -16.90330 -16.17005 -15.75469 -15.57165 -15.47847 -14.88434 -14.29921 -14.21916 -13.79753 -13.62797 -13.35472 -13.30122 -13.07110 -12.84728 -12.57915 -12.19605 -11.94836 -11.56088 -11.42017 -11.03938 -10.62536 -10.05603 -9.54244 -8.89375 -8.51094 -7.96070 -6.34496 0.69950 1.03608 1.06589 1.39365 1.49015 1.51631 1.54751 1.97943 2.24419 2.35318 2.78108 3.21581 3.62616 3.86103 4.11950 4.30432 4.49987 4.57179 4.60332 4.77314 4.81089 4.85035 4.92446 5.07661 5.30436 5.35218 5.65876 5.74444 5.88237 6.06315 6.21025 6.36174 6.56938 6.65950 6.75501 6.85873 6.95189 7.06992 7.32245 8.43047 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.004664 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.127287 B = 6002.268620 C = 6652.015494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.014 3.986 4 C 0.041 3.959 5 N -0.867 5.867 6 C 0.193 3.807 7 O -0.236 6.236 8 C -0.031 4.031 9 C -0.170 4.170 10 C -0.206 4.206 11 C 0.059 3.941 12 C -0.499 4.499 13 H 0.076 0.924 14 C 0.027 3.973 15 N -0.846 5.846 16 Si 0.992 3.008 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.150 4.150 21 C -0.121 4.121 22 N -0.346 5.346 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.226 0.774 27 H 0.399 0.601 28 H 0.410 0.590 29 H 0.181 0.819 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.125 0.875 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 15.763 1.177 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.167 5.167 3 C -0.135 4.135 4 C -0.068 4.068 5 N -0.417 5.417 6 C -0.011 4.011 7 O -0.138 6.138 8 C -0.073 4.073 9 C -0.190 4.190 10 C -0.226 4.226 11 C 0.057 3.943 12 C -0.530 4.530 13 H 0.094 0.906 14 C -0.185 4.185 15 N -0.474 5.474 16 Si 0.813 3.187 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.182 1.182 20 C -0.169 4.169 21 C -0.140 4.140 22 N -0.185 5.185 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.144 0.856 26 H 0.243 0.757 27 H 0.226 0.774 28 H 0.241 0.759 29 H 0.197 0.803 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.569 14.743 0.994 16.602 hybrid contribution 0.886 -0.310 -0.198 0.959 sum -6.683 14.433 0.796 15.925 Atomic orbital electron populations 1.22152 0.71325 1.05873 1.04373 1.48373 1.07192 1.02057 1.59068 1.22322 0.87144 0.94979 1.09023 1.17239 0.90346 0.85542 1.13702 1.41339 1.03406 1.07027 1.89918 1.20912 0.85895 0.90209 1.04077 1.84223 1.27750 1.15955 1.85851 1.18971 0.95548 0.79709 1.13085 1.22599 0.97317 0.97358 1.01705 1.21019 0.97823 0.92970 1.10749 1.18104 0.91326 0.94239 0.90657 1.19671 1.19830 0.91453 1.22072 0.90620 1.26794 0.92766 1.05822 0.93082 1.69836 1.16364 1.38869 1.22303 0.85104 0.79053 0.75229 0.79345 1.18732 1.19285 1.18235 1.21150 0.98172 0.92669 1.04959 1.20083 0.96633 0.92652 1.04673 1.77141 1.00479 1.08821 1.32019 0.89933 0.90151 0.85625 0.75745 0.77390 0.75912 0.80339 0.87734 0.90450 0.85767 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 11.48 127.77 1.47 3.04 16 2 N -0.38 -9.95 4.04 -368.43 -1.49 -11.44 16 3 C 0.01 0.30 11.56 83.43 0.96 1.27 16 4 C 0.04 1.21 7.28 37.66 0.27 1.48 16 5 N -0.87 -19.52 9.20 -51.44 -0.47 -19.99 16 6 C 0.19 7.70 7.78 85.39 0.66 8.36 16 7 O -0.24 -10.87 10.12 -33.55 -0.34 -11.21 16 8 C -0.03 -1.58 6.69 22.82 0.15 -1.42 16 9 C -0.17 -8.73 8.89 22.11 0.20 -8.54 16 10 C -0.21 -11.16 9.74 22.48 0.22 -10.94 16 11 C 0.06 3.42 5.55 -21.28 -0.12 3.30 16 12 C -0.50 -28.31 9.01 23.39 0.21 -28.10 16 13 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 14 C 0.03 1.42 5.43 85.23 0.46 1.88 16 15 N -0.85 -46.33 10.62 21.82 0.23 -46.10 16 16 Si 0.99 40.02 29.56 68.60 2.03 42.05 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.15 -8.51 8.62 22.48 0.19 -8.31 16 21 C -0.12 -6.36 9.92 22.11 0.22 -6.14 16 22 N -0.35 -13.33 8.29 -170.21 -1.41 -14.74 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.23 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.40 9.48 8.96 -92.71 -0.83 8.65 16 28 H 0.41 6.01 8.96 -92.71 -0.83 5.18 16 29 H 0.18 8.56 4.15 -122.50 -0.51 8.05 16 30 H 0.10 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 32 H 0.12 7.24 6.16 -2.91 -0.02 7.22 16 33 H 0.12 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -73.63 288.10 2.46 -71.16 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.99 Total: 34.39 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 4.91 Total: -44.13 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.14 Total: -92.28 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.34 Total: -11.21 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -73.63 2.46 -71.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231663005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.862 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds