Wall clock time and date at job start Mon Mar 30 2020 05:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00184 * 2 1 4 4 C 1.52999 * 109.47218 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46585 * 64.99913 * 4 3 2 6 6 C 1.37111 * 119.99876 * 91.87061 * 5 4 3 7 7 H 1.07999 * 119.99500 * 219.27938 * 6 5 4 8 8 C 1.38945 * 119.99923 * 39.27981 * 6 5 4 9 9 N 1.31412 * 119.99583 * 213.08686 * 8 6 5 10 10 Si 1.86795 * 120.00484 * 33.08373 * 8 6 5 11 11 H 1.48496 * 109.47147 * 93.09546 * 10 8 6 12 12 H 1.48498 * 109.47426 * 213.09801 * 10 8 6 13 13 H 1.48501 * 109.46955 * 333.09799 * 10 8 6 14 14 C 1.34774 * 120.00406 * 271.86378 * 5 4 3 15 15 O 1.21295 * 119.99837 * 5.88102 * 14 5 4 16 16 C 1.50696 * 120.00211 * 185.88442 * 14 5 4 17 17 H 1.08998 * 109.52900 * 308.72642 * 16 14 5 18 18 C 1.53145 * 109.53005 * 68.92662 * 16 14 5 19 19 O 1.43068 * 109.15709 * 175.21524 * 18 16 14 20 20 C 1.43074 * 113.59097 * 302.04793 * 19 18 16 21 21 C 1.53143 * 109.15389 * 57.95151 * 20 19 18 22 22 O 1.43078 * 109.52523 * 188.59645 * 16 14 5 23 23 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47471 * 300.00547 * 1 2 3 25 25 H 1.09000 * 109.46681 * 59.99919 * 1 2 3 26 26 H 1.09002 * 109.47196 * 59.99549 * 3 2 1 27 27 H 1.08994 * 109.46869 * 299.99764 * 3 2 1 28 28 H 1.08997 * 109.47066 * 184.99703 * 4 3 2 29 29 H 1.08998 * 109.47238 * 305.00421 * 4 3 2 30 30 H 0.96997 * 120.00101 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.51856 * 295.11671 * 18 16 14 32 32 H 1.09001 * 109.52046 * 55.30569 * 18 16 14 33 33 H 1.09000 * 109.52479 * 298.04632 * 20 19 18 34 34 H 1.09002 * 109.52949 * 177.85520 * 20 19 18 35 35 H 1.09003 * 109.52337 * 184.78680 * 21 20 19 36 36 H 1.08996 * 109.57815 * 64.62224 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.3050 1.3481 -2.3265 7 1 4.0245 1.0421 -3.3235 8 6 4.9986 2.5366 -2.1338 9 7 4.7772 3.5622 -2.9250 10 14 6.2457 2.6765 -0.7502 11 1 7.5966 2.3375 -1.2653 12 1 6.2500 4.0659 -0.2263 13 1 5.8819 1.7371 0.3409 14 6 4.0597 -0.7780 -1.3450 15 8 3.6690 -1.4752 -0.4326 16 6 4.6381 -1.4121 -2.5836 17 1 4.1445 -1.0049 -3.4659 18 6 6.1397 -1.1198 -2.6549 19 8 6.7013 -1.8170 -3.7709 20 6 6.5005 -3.2327 -3.7215 21 6 4.9990 -3.5251 -3.6503 22 8 4.4375 -2.8279 -2.5342 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.9785 2.1765 0.0902 29 1 3.8508 0.5684 0.8426 30 1 5.2616 4.3917 -2.7908 31 1 6.2967 -0.0482 -2.7783 32 1 6.6202 -1.4559 -1.7360 33 1 6.9933 -3.6399 -2.8386 34 1 6.9189 -3.6915 -4.6174 35 1 4.8420 -4.5967 -3.5269 36 1 4.5176 -3.1899 -4.5690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318895136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:32 Heat of formation + Delta-G solvation = -148.022164 kcal Electronic energy + Delta-G solvation = -21087.740062 eV Core-core repulsion = 17766.554654 eV Total energy + Delta-G solvation = -3321.185408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.78218 -38.34777 -36.90862 -35.56513 -34.69236 -32.11016 -31.38236 -29.36434 -27.44699 -25.78258 -25.01340 -24.23571 -22.44836 -21.01701 -19.18828 -17.46383 -16.62302 -16.25021 -15.83911 -15.71172 -15.49049 -15.29709 -14.84690 -14.54522 -14.44634 -14.14625 -13.37085 -13.22331 -12.88595 -12.49441 -12.22542 -12.04904 -11.91762 -11.54886 -11.17429 -11.06329 -10.96782 -10.58991 -10.42666 -10.28375 -10.11167 -9.99628 -9.16309 -9.00798 -8.76914 -8.38093 -7.77464 -6.65930 -4.13598 3.02622 3.17012 3.23463 3.68978 3.74911 4.06958 4.13371 4.44590 4.63430 4.87865 5.01757 5.32382 5.39122 5.51643 5.61249 5.67274 5.72442 5.80710 5.87741 5.90736 5.95937 5.98792 6.04416 6.08188 6.25948 6.30252 6.46815 6.62806 7.26641 7.35753 7.48615 7.81278 8.00596 8.21312 8.91376 9.33084 9.72164 10.44842 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.010581 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.863898 B = 2645.606266 C = 3954.125691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.459 5.459 6 C -0.364 4.364 7 H 0.100 0.900 8 C 0.080 3.920 9 N -0.835 5.835 10 Si 0.843 3.157 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.254 1.254 14 C 0.493 3.507 15 O -0.553 6.553 16 C 0.060 3.940 17 H 0.087 0.913 18 C 0.042 3.958 19 O -0.378 6.378 20 C 0.021 3.979 21 C 0.024 3.976 22 O -0.359 6.359 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.276 0.724 31 H 0.130 0.870 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -5.568 0.649 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.182 5.182 6 C -0.490 4.490 7 H 0.117 0.883 8 C -0.130 4.130 9 N -0.467 5.467 10 Si 0.666 3.334 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.178 1.178 14 C 0.280 3.720 15 O -0.433 6.433 16 C -0.001 4.001 17 H 0.104 0.896 18 C -0.035 4.035 19 O -0.297 6.297 20 C -0.056 4.056 21 C -0.053 4.053 22 O -0.277 6.277 23 H 0.096 0.904 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.495 -5.866 1.051 5.980 hybrid contribution 0.449 0.648 0.409 0.888 sum -0.045 -5.219 1.461 5.419 Atomic orbital electron populations 1.22636 0.83085 1.01812 0.98922 1.88184 1.17697 1.27121 1.95103 1.22989 0.95306 0.85029 0.99616 1.21608 0.91592 0.98089 0.88784 1.43436 1.58976 1.03647 1.12149 1.18952 1.38529 1.03505 0.88027 0.88260 1.25337 0.96437 0.94513 0.96702 1.69949 1.36378 1.01316 1.39095 0.87452 0.83668 0.78428 0.83819 1.19714 1.20524 1.17771 1.19682 0.81900 0.82933 0.87478 1.90602 1.50277 1.62048 1.40399 1.22341 0.96664 0.81626 0.99495 0.89563 1.23194 0.91588 0.99772 0.88945 1.88103 1.77924 1.17925 1.45705 1.23215 0.96357 0.83498 1.02562 1.23202 0.93542 0.97905 0.90660 1.88178 1.77651 1.18094 1.43780 0.90418 0.95112 0.94782 0.94078 0.92467 0.90235 0.90923 0.91342 0.85251 0.92814 0.92518 0.88367 0.88258 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.74 9.04 -51.58 -0.47 -8.20 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.12 2.70 4.21 -4.04 -0.02 2.68 16 5 N -0.46 -10.92 2.10 -114.82 -0.24 -11.16 16 6 C -0.36 -8.99 7.29 -14.93 -0.11 -9.10 16 7 H 0.10 2.61 7.08 -52.49 -0.37 2.24 16 8 C 0.08 1.98 5.03 -17.47 -0.09 1.89 16 9 N -0.83 -21.60 13.96 55.50 0.77 -20.83 16 10 Si 0.84 18.55 26.39 -169.99 -4.49 14.06 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.25 -5.52 5.91 56.52 0.33 -5.19 16 14 C 0.49 12.00 6.68 -10.99 -0.07 11.93 16 15 O -0.55 -14.83 14.92 -22.61 -0.34 -15.17 16 16 C 0.06 1.29 2.54 -27.81 -0.07 1.22 16 17 H 0.09 1.87 7.13 -51.93 -0.37 1.50 16 18 C 0.04 0.84 6.16 37.23 0.23 1.07 16 19 O -0.38 -6.96 10.85 -48.80 -0.53 -7.49 16 20 C 0.02 0.30 7.05 37.23 0.26 0.57 16 21 C 0.02 0.37 7.05 37.23 0.26 0.64 16 22 O -0.36 -7.44 10.04 -62.46 -0.63 -8.07 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.68 4.65 -51.93 -0.24 1.44 16 29 H 0.07 1.62 7.57 -51.93 -0.39 1.23 16 30 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.13 2.74 6.62 -51.93 -0.34 2.40 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -30.37 293.49 -4.90 -35.27 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.15 Total: 3.43 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 1.74 Total: 13.73 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.53 Total: -31.99 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.96 Total: -38.93 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.49 Total: 14.06 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.37 -4.90 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318895136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.751 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds