Wall clock time and date at job start Mon Mar 30 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99943 * 2 1 4 4 H 1.48503 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47177 * 299.99158 * 3 2 1 6 6 H 1.48501 * 109.47280 * 59.99688 * 3 2 1 7 7 C 1.38813 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00152 * 200.55905 * 7 2 1 9 9 N 1.36943 * 119.99998 * 20.55768 * 7 2 1 10 10 C 1.46496 * 119.99973 * 38.13664 * 9 7 2 11 11 C 1.52991 * 109.47609 * 89.99975 * 10 9 7 12 12 H 1.09002 * 110.66291 * 303.23942 * 11 10 9 13 13 C 1.54699 * 110.75387 * 179.81676 * 11 10 9 14 14 C 1.51648 * 101.93393 * 216.39974 * 13 11 10 15 15 C 1.37736 * 132.17725 * 195.85925 * 14 13 11 16 16 C 1.38352 * 119.97971 * 179.07301 * 15 14 13 17 17 C 1.38289 * 119.76477 * 0.02562 * 16 15 14 18 18 C 1.37923 * 120.35394 * 0.44105 * 17 16 15 19 19 C 1.38883 * 107.03582 * 15.33404 * 14 13 11 20 20 O 1.36131 * 111.23567 * 1.14723 * 19 14 13 21 21 C 1.46502 * 119.99669 * 218.13525 * 9 7 2 22 22 C 1.52999 * 117.50408 * 13.67245 * 21 9 7 23 23 C 1.52996 * 117.50030 * 305.04801 * 21 9 7 24 24 H 0.96995 * 120.00691 * 354.98710 * 1 2 3 25 25 H 1.09005 * 109.47086 * 329.99665 * 10 9 7 26 26 H 1.08998 * 109.46934 * 210.00222 * 10 9 7 27 27 H 1.09001 * 110.94141 * 98.24281 * 13 11 10 28 28 H 1.09005 * 110.94123 * 334.55373 * 13 11 10 29 29 H 1.07999 * 120.01079 * 359.05517 * 15 14 13 30 30 H 1.08003 * 120.11937 * 179.97438 * 16 15 14 31 31 H 1.08003 * 119.82015 * 180.16717 * 17 16 15 32 32 H 1.08003 * 119.88376 * 179.72416 * 18 17 16 33 33 H 1.09003 * 115.54666 * 159.37872 * 21 9 7 34 34 H 1.09000 * 117.49294 * 359.97438 * 22 21 9 35 35 H 1.09000 * 117.49937 * 145.01460 * 22 21 9 36 36 H 1.09001 * 117.49481 * 214.98091 * 23 21 9 37 37 H 1.08999 * 117.49975 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0386 -1.2318 0.3290 9 7 1.3909 -2.3505 -0.4154 10 6 0.4613 -2.3128 -1.5469 11 6 1.2294 -2.5604 -2.8467 12 1 2.0310 -1.8312 -2.9646 13 6 0.2733 -2.5314 -4.0625 14 6 0.8656 -3.6066 -4.9529 15 6 0.6875 -3.9053 -6.2857 16 6 1.3846 -4.9543 -6.8582 17 6 2.2583 -5.6996 -6.0877 18 6 2.4309 -5.4084 -4.7507 19 6 1.7352 -4.3519 -4.1674 20 8 1.7501 -3.9001 -2.8834 21 6 1.6582 -3.6168 0.2713 22 6 2.3717 -3.5506 1.6231 23 6 3.1171 -4.0624 0.3889 24 1 -0.4851 0.8367 0.0734 25 1 -0.0197 -1.3355 -1.5896 26 1 -0.2969 -3.0856 -1.4201 27 1 0.2993 -1.5595 -4.5554 28 1 -0.7433 -2.7886 -3.7649 29 1 0.0037 -3.3210 -6.8835 30 1 1.2464 -5.1908 -7.9029 31 1 2.8050 -6.5170 -6.5344 32 1 3.1119 -5.9982 -4.1550 33 1 0.9042 -4.3925 0.1372 34 1 2.6426 -2.5649 2.0013 35 1 2.0870 -4.2827 2.3788 36 1 3.3228 -5.1314 0.3326 37 1 3.8780 -3.4138 -0.0450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706729346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:10 Heat of formation + Delta-G solvation = 28.624645 kcal Electronic energy + Delta-G solvation = -19369.863522 eV Core-core repulsion = 16499.480108 eV Total energy + Delta-G solvation = -2870.383413 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94163 -38.90185 -38.07878 -35.44340 -33.76716 -32.66459 -30.84435 -30.36218 -27.32088 -25.49009 -23.30865 -22.94874 -22.54215 -22.32929 -21.68067 -18.44436 -18.28908 -17.61787 -17.20680 -16.68467 -16.19609 -15.91078 -15.59661 -15.00721 -14.77166 -14.33668 -13.99630 -13.89915 -13.66577 -13.36730 -13.11198 -12.95066 -12.71922 -12.56702 -12.32955 -12.20185 -12.06179 -11.90884 -11.75613 -11.58085 -11.32437 -10.91325 -10.48684 -9.78453 -8.98879 -8.46017 -7.89807 -5.50216 0.40784 0.50208 1.41187 1.45459 1.55212 2.43375 2.49091 2.85599 3.11278 3.32294 3.48860 3.61047 3.83638 4.05462 4.14277 4.26491 4.29153 4.40082 4.45660 4.50227 4.59545 4.62941 4.73240 4.79322 4.90806 4.93251 5.01623 5.07696 5.24989 5.34693 5.46267 5.47752 5.53167 5.59172 5.59976 5.67686 5.87739 6.41216 6.43245 7.10144 7.77661 8.32867 9.08113 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.006444 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.236249 B = 4343.813528 C = 5113.838678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.027 4.027 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.264 4.264 8 H 0.050 0.950 9 N -0.563 5.563 10 C 0.162 3.838 11 C 0.072 3.928 12 H 0.056 0.944 13 C -0.098 4.098 14 C -0.192 4.192 15 C -0.077 4.077 16 C -0.152 4.152 17 C -0.084 4.084 18 C -0.160 4.160 19 C 0.075 3.925 20 O -0.310 6.310 21 C 0.111 3.889 22 C -0.193 4.193 23 C -0.200 4.200 24 H 0.258 0.742 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -8.832 -12.106 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.225 4.225 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.394 4.394 8 H 0.068 0.932 9 N -0.279 5.279 10 C 0.036 3.964 11 C 0.014 3.986 12 H 0.074 0.926 13 C -0.135 4.135 14 C -0.193 4.193 15 C -0.095 4.095 16 C -0.170 4.170 17 C -0.102 4.102 18 C -0.179 4.179 19 C 0.029 3.971 20 O -0.225 6.225 21 C 0.003 3.997 22 C -0.231 4.231 23 C -0.240 4.240 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.297 -8.759 -11.936 14.861 hybrid contribution 0.387 1.244 0.498 1.395 sum 1.684 -7.514 -11.437 13.788 Atomic orbital electron populations 1.69973 1.06584 1.26669 1.52819 1.25829 0.95829 1.01228 0.99628 0.85392 0.78632 0.80210 0.77349 1.19910 1.20891 1.21316 1.19059 0.93835 0.85871 1.40624 0.93246 1.43431 1.50480 1.02942 1.31076 1.21018 0.90336 1.01823 0.83261 1.24163 0.95410 0.80932 0.98080 0.92634 1.21745 0.99725 0.98636 0.93439 1.21079 1.00992 1.00869 0.96334 1.20660 0.99257 0.97648 0.91900 1.21409 0.98131 0.95997 1.01479 1.21235 0.97672 0.99687 0.91594 1.20561 1.02282 0.98733 0.96329 1.20272 0.95538 0.96517 0.84741 1.86939 1.81243 1.30817 1.23457 1.21236 0.92947 0.89922 0.95615 1.23093 1.06561 1.01630 0.91863 1.23154 0.98051 0.99936 1.02861 0.93295 0.88824 0.94564 0.88590 0.89013 0.83827 0.82299 0.82186 0.85391 0.88834 0.90773 0.87974 0.88328 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.66 11.45 21.65 0.25 -51.41 16 2 C -0.03 -1.49 4.97 84.86 0.42 -1.07 16 3 Si 0.96 43.90 29.60 68.60 2.03 45.93 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.26 -14.42 8.04 84.03 0.68 -13.75 16 8 H 0.05 2.79 7.24 -2.91 -0.02 2.77 16 9 N -0.56 -28.61 2.77 -678.05 -1.88 -30.49 16 10 C 0.16 7.65 5.01 86.38 0.43 8.09 16 11 C 0.07 3.02 3.87 31.17 0.12 3.14 16 12 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.10 -3.30 6.65 30.73 0.20 -3.09 16 14 C -0.19 -6.09 6.27 -19.53 -0.12 -6.22 16 15 C -0.08 -1.87 10.03 22.18 0.22 -1.65 16 16 C -0.15 -3.07 10.07 22.31 0.22 -2.85 16 17 C -0.08 -1.81 10.01 22.21 0.22 -1.59 16 18 C -0.16 -4.61 10.06 22.45 0.23 -4.38 16 19 C 0.07 2.66 7.04 22.68 0.16 2.82 16 20 O -0.31 -13.01 10.55 -95.04 -1.00 -14.02 16 21 C 0.11 5.03 6.37 44.99 0.29 5.31 16 22 C -0.19 -7.97 9.81 30.59 0.30 -7.67 16 23 C -0.20 -8.09 10.10 30.59 0.31 -7.78 16 24 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 25 H 0.09 4.86 5.52 -2.38 -0.01 4.85 16 26 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 27 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.09 2.96 7.92 -2.38 -0.02 2.94 16 29 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.09 4.02 8.10 -2.39 -0.02 4.00 16 34 H 0.07 3.42 6.94 -2.39 -0.02 3.40 16 35 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.06 2.81 8.02 -2.39 -0.02 2.80 16 Total: -1.00 -62.62 308.91 4.13 -58.49 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.05 Total: 22.19 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 3.68 Total: -30.69 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.63 Total: -81.90 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.00 Total: -14.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.62 4.13 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706729346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.111 kcal (2) G-P(sol) polarization free energy of solvation -62.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds