Wall clock time and date at job start Mon Mar 30 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46894 * 111.00050 * 2 1 4 4 H 1.09001 * 109.47845 * 325.00686 * 3 2 1 5 5 C 1.53003 * 109.47138 * 85.00208 * 3 2 1 6 6 C 1.50702 * 109.47305 * 205.00082 * 3 2 1 7 7 C 1.38068 * 120.03946 * 334.11285 * 6 3 2 8 8 C 1.38308 * 120.08598 * 180.02562 * 7 6 3 9 9 C 1.38352 * 120.18124 * 0.02562 * 8 7 6 10 10 C 1.38034 * 120.08753 * 359.70265 * 9 8 7 11 11 C 1.39055 * 120.04644 * 154.13367 * 6 3 2 12 12 N 1.39304 * 120.09093 * 359.96088 * 11 6 3 13 13 C 1.36843 * 120.00238 * 95.07338 * 12 11 6 14 14 H 1.08004 * 120.00257 * 346.13161 * 13 12 11 15 15 C 1.38791 * 120.00103 * 166.12857 * 13 12 11 16 16 N 1.31598 * 119.99866 * 340.40684 * 15 13 12 17 17 Si 1.86800 * 120.00470 * 160.68418 * 15 13 12 18 18 H 1.48495 * 109.47353 * 89.99838 * 17 15 13 19 19 H 1.48505 * 109.47217 * 210.00199 * 17 15 13 20 20 H 1.48505 * 109.46856 * 329.99826 * 17 15 13 21 21 C 1.46503 * 119.99710 * 275.07590 * 12 11 6 22 22 C 1.47194 * 109.47031 * 275.96773 * 21 12 11 23 23 N 6.81740 * 105.67471 * 317.59234 * 2 1 3 24 24 H 1.09001 * 109.46919 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47003 * 59.99552 * 1 2 3 26 26 H 1.08992 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.00899 * 110.99556 * 123.96050 * 2 1 3 28 28 H 1.08990 * 109.47629 * 184.98278 * 5 3 2 29 29 H 1.09001 * 109.47293 * 304.98558 * 5 3 2 30 30 H 1.09001 * 109.47051 * 64.97752 * 5 3 2 31 31 H 1.07994 * 119.96141 * 359.97438 * 7 6 3 32 32 H 1.08000 * 119.91199 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.95490 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.04406 * 180.29832 * 10 9 8 35 35 H 0.96997 * 119.99969 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46727 * 35.96425 * 21 12 11 37 37 H 1.08994 * 109.47264 * 155.96586 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0124 -0.5893 5 6 2.0610 1.8925 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 4.1575 0.2405 -0.5544 8 6 5.4264 0.2465 -1.1048 9 6 5.9197 1.3923 -1.7028 10 6 5.1443 2.5329 -1.7579 11 6 3.8696 2.5325 -1.2012 12 7 3.0858 3.6831 -1.2501 13 6 3.2250 4.6472 -0.2889 14 1 3.7666 4.4296 0.6198 15 6 2.6702 5.9047 -0.4818 16 7 2.3573 6.3067 -1.6952 17 14 2.3747 7.0295 0.9799 18 1 3.5779 7.8689 1.2099 19 1 1.2066 7.9039 0.7035 20 1 2.1044 6.2100 2.1885 21 6 2.1125 3.8610 -2.3305 22 6 2.7889 4.4173 -3.5136 23 7 3.3110 4.8465 -4.4267 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5262 0.7813 28 1 2.3671 2.9385 1.4306 29 1 1.0784 1.8044 1.9006 30 1 2.7839 1.3058 2.0038 31 1 3.7766 -0.6557 -0.0874 32 1 6.0338 -0.6458 -1.0675 33 1 6.9112 1.3931 -2.1311 34 1 5.5282 3.4256 -2.2293 35 1 1.9699 7.1857 -1.8301 36 1 1.6710 2.8972 -2.5841 37 1 1.3290 4.5452 -2.0048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034838557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:19 Heat of formation + Delta-G solvation = 84.533658 kcal Electronic energy + Delta-G solvation = -19729.986573 eV Core-core repulsion = 16894.320307 eV Total energy + Delta-G solvation = -2835.666265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.27461 -36.34992 -35.98734 -34.32286 -31.80062 -31.01743 -29.23141 -28.29108 -26.95183 -24.93755 -23.63948 -22.84395 -20.65355 -19.86522 -17.53356 -16.91445 -15.93717 -15.68403 -14.83507 -14.65555 -14.32439 -13.79979 -13.71846 -13.40824 -13.26701 -12.72944 -12.39331 -12.22851 -11.97713 -11.86279 -11.61185 -11.40059 -11.35387 -11.13658 -11.05095 -10.97916 -10.55499 -10.37951 -10.34123 -9.97715 -9.93559 -8.87215 -8.25953 -8.09819 -7.83472 -7.37526 -6.06724 -3.47623 2.03194 2.11601 3.26226 3.34515 3.35337 4.02978 4.29101 4.37188 4.44921 4.58465 5.13564 5.29909 5.30706 5.43110 5.55708 5.59807 5.62026 5.71870 5.77962 5.83693 5.97882 6.03052 6.22501 6.26739 6.37148 6.41486 6.59169 6.71035 6.77670 6.94952 7.03937 7.15366 7.35086 7.49267 7.52577 7.60571 7.68401 8.14502 8.86878 9.11860 9.58573 9.93694 11.00986 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.009001 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.471723 B = 3110.186042 C = 3751.444365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.691 5.691 3 C 0.134 3.866 4 H 0.095 0.905 5 C -0.175 4.175 6 C -0.085 4.085 7 C -0.099 4.099 8 C -0.147 4.147 9 C -0.123 4.123 10 C -0.131 4.131 11 C 0.201 3.799 12 N -0.548 5.548 13 C -0.259 4.259 14 H 0.083 0.917 15 C 0.007 3.993 16 N -0.902 5.902 17 Si 0.909 3.091 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.257 3.743 22 C 0.250 3.750 23 N -0.505 5.505 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.335 0.665 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.261 0.739 36 H 0.057 0.943 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -11.720 5.597 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C 0.025 3.975 4 H 0.113 0.887 5 C -0.234 4.234 6 C -0.088 4.088 7 C -0.118 4.118 8 C -0.165 4.165 9 C -0.142 4.142 10 C -0.152 4.152 11 C 0.107 3.893 12 N -0.265 5.265 13 C -0.386 4.386 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.546 5.546 17 Si 0.738 3.262 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.128 3.872 22 C -0.068 4.068 23 N -0.186 5.186 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.673 -10.949 3.539 11.628 hybrid contribution -0.251 1.043 1.928 2.206 sum -1.925 -9.906 5.466 11.477 Atomic orbital electron populations 1.22176 0.88259 1.01093 1.00528 1.60587 1.07293 1.14751 1.49381 1.20248 0.93548 0.88084 0.95657 0.88732 1.22445 1.00319 1.04574 0.96049 1.20218 0.95666 0.93788 0.99101 1.20682 0.93525 0.97401 1.00220 1.20926 0.96331 0.97721 1.01524 1.20944 0.99215 0.93490 1.00584 1.21828 0.95692 0.97809 0.99829 1.17514 0.90237 0.87532 0.94009 1.41482 1.40625 1.17170 1.27198 1.19186 1.33288 0.90778 0.95329 0.89890 1.24869 1.01191 0.96499 0.96564 1.69928 1.46187 1.19864 1.18617 0.86184 0.77769 0.80335 0.81877 1.21393 1.21335 1.20198 1.18499 0.91276 0.97300 0.80091 1.30428 0.92882 0.90689 0.92843 1.80823 1.10322 1.12460 1.15016 0.96115 0.91642 0.92080 0.84806 0.89321 0.93627 0.93514 0.86664 0.87329 0.87401 0.86782 0.92803 0.92515 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.50 60.07 0.63 0.96 16 2 N -0.69 -8.93 5.64 -115.24 -0.65 -9.58 16 3 C 0.13 2.07 2.51 -68.87 -0.17 1.90 16 4 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 5 C -0.18 -2.64 9.16 37.16 0.34 -2.30 16 6 C -0.08 -1.47 5.07 -104.38 -0.53 -2.00 16 7 C -0.10 -1.55 9.31 -39.62 -0.37 -1.92 16 8 C -0.15 -2.25 10.04 -39.51 -0.40 -2.64 16 9 C -0.12 -2.08 10.04 -39.61 -0.40 -2.48 16 10 C -0.13 -2.61 9.98 -39.34 -0.39 -3.01 16 11 C 0.20 4.04 5.00 -83.84 -0.42 3.62 16 12 N -0.55 -11.94 1.74 -116.25 -0.20 -12.15 16 13 C -0.26 -6.15 8.45 -15.11 -0.13 -6.28 16 14 H 0.08 1.99 7.51 -52.48 -0.39 1.59 16 15 C 0.01 0.18 4.96 -17.45 -0.09 0.10 16 16 N -0.90 -23.49 9.27 55.49 0.51 -22.98 16 17 Si 0.91 19.91 29.59 -169.99 -5.03 14.88 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 21 C 0.26 5.46 4.72 -6.83 -0.03 5.43 16 22 C 0.25 6.00 13.88 -20.76 -0.29 5.71 16 23 N -0.51 -12.97 18.54 42.15 0.78 -12.19 16 24 H 0.02 0.22 7.36 -51.93 -0.38 -0.16 16 25 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.33 3.83 7.98 -39.29 -0.31 3.52 16 28 H 0.09 1.58 6.40 -51.93 -0.33 1.25 16 29 H 0.04 0.62 7.35 -51.93 -0.38 0.24 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 1.55 6.90 -52.49 -0.36 1.19 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.06 1.05 7.62 -51.93 -0.40 0.65 16 37 H 0.13 2.83 6.08 -51.93 -0.32 2.52 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -27.39 309.91 -7.02 -34.41 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.86 Total: 5.85 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.24 Total: -2.92 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.44 Total: -56.89 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.39 -7.02 -34.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034838557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.943 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds