Wall clock time and date at job start Mon Mar 30 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46894 * 111.00050 * 2 1 4 4 H 1.09001 * 109.47845 * 325.00686 * 3 2 1 5 5 C 1.53003 * 109.47138 * 85.00208 * 3 2 1 6 6 C 1.50702 * 109.47305 * 205.00082 * 3 2 1 7 7 C 1.38068 * 120.03946 * 334.11285 * 6 3 2 8 8 C 1.38308 * 120.08598 * 180.02562 * 7 6 3 9 9 C 1.38352 * 120.18124 * 0.02562 * 8 7 6 10 10 C 1.38034 * 120.08753 * 359.70265 * 9 8 7 11 11 C 1.39055 * 120.04644 * 154.13367 * 6 3 2 12 12 N 1.39304 * 120.09093 * 359.96088 * 11 6 3 13 13 C 1.36843 * 120.00238 * 95.07338 * 12 11 6 14 14 H 1.08004 * 120.00257 * 346.13161 * 13 12 11 15 15 C 1.38791 * 120.00103 * 166.12857 * 13 12 11 16 16 N 1.31598 * 119.99866 * 340.40684 * 15 13 12 17 17 Si 1.86800 * 120.00470 * 160.68418 * 15 13 12 18 18 H 1.48495 * 109.47353 * 89.99838 * 17 15 13 19 19 H 1.48505 * 109.47217 * 210.00199 * 17 15 13 20 20 H 1.48505 * 109.46856 * 329.99826 * 17 15 13 21 21 C 1.46503 * 119.99710 * 275.07590 * 12 11 6 22 22 C 1.47194 * 109.47031 * 275.96773 * 21 12 11 23 23 N 6.81740 * 105.67471 * 317.59234 * 2 1 3 24 24 H 1.09001 * 109.46919 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47003 * 59.99552 * 1 2 3 26 26 H 1.08992 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.00899 * 110.99556 * 123.96050 * 2 1 3 28 28 H 1.08990 * 109.47629 * 184.98278 * 5 3 2 29 29 H 1.09001 * 109.47293 * 304.98558 * 5 3 2 30 30 H 1.09001 * 109.47051 * 64.97752 * 5 3 2 31 31 H 1.07994 * 119.96141 * 359.97438 * 7 6 3 32 32 H 1.08000 * 119.91199 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.95490 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.04406 * 180.29832 * 10 9 8 35 35 H 0.96997 * 119.99969 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46727 * 35.96425 * 21 12 11 37 37 H 1.08994 * 109.47264 * 155.96586 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0124 -0.5893 5 6 2.0610 1.8925 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 4.1575 0.2405 -0.5544 8 6 5.4264 0.2465 -1.1048 9 6 5.9197 1.3923 -1.7028 10 6 5.1443 2.5329 -1.7579 11 6 3.8696 2.5325 -1.2012 12 7 3.0858 3.6831 -1.2501 13 6 3.2250 4.6472 -0.2889 14 1 3.7666 4.4296 0.6198 15 6 2.6702 5.9047 -0.4818 16 7 2.3573 6.3067 -1.6952 17 14 2.3747 7.0295 0.9799 18 1 3.5779 7.8689 1.2099 19 1 1.2066 7.9039 0.7035 20 1 2.1044 6.2100 2.1885 21 6 2.1125 3.8610 -2.3305 22 6 2.7889 4.4173 -3.5136 23 7 3.3110 4.8465 -4.4267 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5262 0.7813 28 1 2.3671 2.9385 1.4306 29 1 1.0784 1.8044 1.9006 30 1 2.7839 1.3058 2.0038 31 1 3.7766 -0.6557 -0.0874 32 1 6.0338 -0.6458 -1.0675 33 1 6.9112 1.3931 -2.1311 34 1 5.5282 3.4256 -2.2293 35 1 1.9699 7.1857 -1.8301 36 1 1.6710 2.8972 -2.5841 37 1 1.3290 4.5452 -2.0048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034838557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:19 Heat of formation + Delta-G solvation = 69.814175 kcal Electronic energy + Delta-G solvation = -19730.624857 eV Core-core repulsion = 16894.320307 eV Total energy + Delta-G solvation = -2836.304550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66541 -37.88781 -37.29437 -36.20173 -33.52045 -32.24201 -30.69228 -29.61223 -28.72428 -26.02134 -25.26694 -24.09538 -22.11463 -21.14649 -19.35723 -18.47027 -17.55402 -17.02956 -16.20810 -16.00021 -15.77750 -15.52910 -15.04679 -14.71160 -14.57966 -14.14561 -13.97049 -13.69376 -13.30254 -13.27912 -13.20206 -12.91513 -12.87612 -12.69919 -12.49612 -12.43725 -12.17784 -11.98566 -11.86133 -11.64799 -11.45061 -10.69229 -9.47385 -9.41403 -9.17977 -9.05750 -7.95653 -5.36027 0.68296 0.73310 1.49125 1.53627 1.61102 2.19142 2.43278 2.55477 3.08764 3.24726 3.46363 3.64087 3.83796 4.10952 4.28582 4.37489 4.48568 4.55684 4.69051 4.72838 4.75890 4.79433 4.95246 5.05230 5.11250 5.18315 5.19199 5.29236 5.44507 5.48215 5.65099 5.72826 5.81402 6.03989 6.17507 6.29697 6.42169 6.67094 7.01327 7.21824 7.79732 8.14023 9.10548 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.009001 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.471723 B = 3110.186042 C = 3751.444365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.689 5.689 3 C 0.140 3.860 4 H 0.075 0.925 5 C -0.168 4.168 6 C -0.085 4.085 7 C -0.094 4.094 8 C -0.134 4.134 9 C -0.125 4.125 10 C -0.157 4.157 11 C 0.169 3.831 12 N -0.549 5.549 13 C -0.247 4.247 14 H 0.079 0.921 15 C -0.037 4.037 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.300 1.300 19 H -0.293 1.293 20 H -0.264 1.264 21 C 0.261 3.739 22 C 0.260 3.740 23 N -0.544 5.544 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.347 0.653 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -14.701 7.163 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C 0.030 3.970 4 H 0.093 0.907 5 C -0.226 4.226 6 C -0.088 4.088 7 C -0.112 4.112 8 C -0.152 4.152 9 C -0.144 4.144 10 C -0.178 4.178 11 C 0.076 3.924 12 N -0.266 5.266 13 C -0.375 4.375 14 H 0.097 0.903 15 C -0.233 4.233 16 N -0.577 5.577 17 Si 0.793 3.207 18 H -0.227 1.227 19 H -0.219 1.219 20 H -0.188 1.188 21 C 0.132 3.868 22 C -0.058 4.058 23 N -0.225 5.225 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.165 0.835 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.817 -13.975 5.130 14.997 hybrid contribution -0.135 1.820 1.470 2.343 sum -1.952 -12.154 6.600 13.968 Atomic orbital electron populations 1.22225 0.87065 1.02456 1.00313 1.60529 1.08406 1.12988 1.50075 1.20065 0.92284 0.89364 0.95251 0.90663 1.22342 1.01416 1.02667 0.96217 1.20351 0.96762 0.93183 0.98483 1.21050 0.93327 0.97557 0.99302 1.21351 0.96418 0.98129 0.99271 1.21163 0.99772 0.92942 1.00503 1.21706 0.96580 0.98011 1.01512 1.17746 0.90442 0.87988 0.96252 1.41497 1.41136 1.17381 1.26591 1.19316 1.31676 0.90967 0.95503 0.90292 1.25409 1.01981 0.97723 0.98151 1.70061 1.47903 1.19715 1.19991 0.85334 0.76603 0.78651 0.80152 1.22732 1.21936 1.18798 1.18644 0.90763 0.98266 0.79113 1.31110 0.92142 0.89799 0.92752 1.80797 1.11632 1.13769 1.16349 0.95745 0.92496 0.89899 0.83476 0.92446 0.92169 0.92307 0.83700 0.83516 0.85465 0.90283 0.93780 0.89450 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.50 127.69 1.34 1.90 16 2 N -0.69 -15.46 5.64 -518.51 -2.92 -18.38 16 3 C 0.14 4.04 2.51 44.17 0.11 4.15 16 4 H 0.08 2.48 6.16 -2.39 -0.01 2.46 16 5 C -0.17 -4.71 9.16 71.98 0.66 -4.05 16 6 C -0.09 -2.78 5.07 -19.71 -0.10 -2.88 16 7 C -0.09 -2.56 9.31 22.25 0.21 -2.35 16 8 C -0.13 -3.56 10.04 22.31 0.22 -3.34 16 9 C -0.13 -3.99 10.04 22.25 0.22 -3.76 16 10 C -0.16 -6.34 9.98 22.43 0.22 -6.11 16 11 C 0.17 6.74 5.00 38.36 0.19 6.93 16 12 N -0.55 -24.29 1.74 -521.72 -0.91 -25.20 16 13 C -0.25 -11.92 8.45 84.04 0.71 -11.21 16 14 H 0.08 3.83 7.51 -2.91 -0.02 3.81 16 15 C -0.04 -1.87 4.96 84.86 0.42 -1.45 16 16 N -0.93 -49.91 9.27 21.65 0.20 -49.70 16 17 Si 0.96 41.66 29.59 68.60 2.03 43.69 16 18 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 C 0.26 11.27 4.72 84.57 0.40 11.67 16 22 C 0.26 12.79 13.88 89.44 1.24 14.03 16 23 N -0.54 -28.77 18.54 20.00 0.37 -28.40 16 24 H 0.02 0.45 7.36 -2.39 -0.02 0.44 16 25 H 0.06 1.20 8.06 -2.38 -0.02 1.18 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.35 6.42 7.98 -89.70 -0.72 5.71 16 28 H 0.06 1.99 6.40 -2.39 -0.02 1.97 16 29 H 0.06 1.49 7.35 -2.39 -0.02 1.47 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.15 3.12 6.90 -2.91 -0.02 3.10 16 32 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.08 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 36 H 0.09 3.21 7.62 -2.39 -0.02 3.19 16 37 H 0.12 5.35 6.08 -2.39 -0.01 5.34 16 Total: -1.00 -60.25 309.91 4.99 -55.25 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.37 Total: 19.21 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 5.85 Total: 3.52 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -3.26 Total: -121.68 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -60.25 4.99 -55.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034838557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.067 kcal (2) G-P(sol) polarization free energy of solvation -60.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds