Wall clock time and date at job start Mon Mar 30 2020 05:26:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47171 * 2 1
4 4 C 1.47199 * 109.47006 * 239.99617 * 2 1 3
5 5 N 2.60802 * 109.47252 * 239.99801 * 2 1 3
6 6 C 1.53002 * 109.46745 * 119.99738 * 2 1 3
7 7 N 1.46894 * 109.47534 * 297.62494 * 6 2 1
8 8 C 1.46900 * 111.00215 * 156.63734 * 7 6 2
9 9 C 1.50693 * 109.46912 * 288.14069 * 8 7 6
10 10 H 1.08004 * 120.00435 * 4.95889 * 9 8 7
11 11 C 1.37881 * 119.99962 * 184.95304 * 9 8 7
12 12 N 1.31512 * 120.00022 * 180.02562 * 11 9 8
13 13 Si 1.86803 * 119.99743 * 0.02562 * 11 9 8
14 14 H 1.48495 * 109.47387 * 89.99924 * 13 11 9
15 15 H 1.48505 * 109.46899 * 209.99599 * 13 11 9
16 16 H 1.48497 * 109.47075 * 329.99413 * 13 11 9
17 17 C 1.46900 * 110.99657 * 280.59285 * 7 6 2
18 18 C 1.50701 * 109.47438 * 77.51272 * 17 7 6
19 19 C 1.38677 * 120.41644 * 69.12480 * 18 17 7
20 20 C 1.38626 * 118.41927 * 179.97438 * 19 18 17
21 21 C 1.38230 * 119.15991 * 0.25119 * 20 19 18
22 22 N 1.31854 * 120.76455 * 359.49801 * 21 20 19
23 23 C 1.31887 * 121.72323 * 0.49620 * 22 21 20
24 24 H 1.09000 * 109.47778 * 184.89739 * 1 2 3
25 25 H 1.09001 * 109.47664 * 304.90610 * 1 2 3
26 26 H 1.09009 * 109.47001 * 64.89978 * 1 2 3
27 27 H 1.09005 * 109.46946 * 177.62103 * 6 2 1
28 28 H 1.09009 * 109.47185 * 57.62600 * 6 2 1
29 29 H 1.08997 * 109.47114 * 48.14743 * 8 7 6
30 30 H 1.09007 * 109.46796 * 168.14251 * 8 7 6
31 31 H 0.97006 * 120.00047 * 180.02562 * 12 11 9
32 32 H 1.09000 * 109.47450 * 317.51170 * 17 7 6
33 33 H 1.09006 * 109.47199 * 197.51169 * 17 7 6
34 34 H 1.07997 * 120.78771 * 359.96161 * 19 18 17
35 35 H 1.07998 * 120.42373 * 179.97438 * 20 19 18
36 36 H 1.08006 * 119.61818 * 179.75102 * 21 20 19
37 37 H 1.08005 * 119.61583 * 179.75079 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0206 -0.6940 -1.2018
5 7 2.3994 -1.2295 -2.1294
6 6 2.0399 -0.7212 1.2493
7 7 1.5977 0.0036 2.4480
8 6 1.5639 -0.8844 3.6177
9 6 0.4095 -1.8441 3.4866
10 1 -0.1859 -1.8529 2.5856
11 6 0.1134 -2.7112 4.5170
12 7 -0.8938 -3.5491 4.4024
13 14 1.1429 -2.6957 6.0757
14 1 0.5575 -1.7362 7.0461
15 1 1.1583 -4.0556 6.6722
16 1 2.5312 -2.2832 5.7478
17 6 2.4494 1.1737 2.6997
18 6 2.0679 2.2851 1.7561
19 6 0.8491 2.9328 1.8904
20 6 0.5406 3.9496 1.0001
21 6 1.4495 4.2782 0.0118
22 7 2.6015 3.6438 -0.0830
23 6 2.9283 2.6719 0.7465
24 1 -0.3635 -1.0239 0.0877
25 1 -0.3634 0.5880 0.8428
26 1 -0.3633 0.4360 -0.9307
27 1 3.1291 -0.7583 1.2283
28 1 1.6421 -1.7359 1.2709
29 1 2.4973 -1.4444 3.6758
30 1 1.4406 -0.2890 4.5224
31 1 -1.1023 -4.1588 5.1275
32 1 3.4934 0.9042 2.5404
33 1 2.3132 1.5077 3.7284
34 1 0.1566 2.6516 2.6700
35 1 -0.3997 4.4755 1.0749
36 1 1.2151 5.0665 -0.6883
37 1 3.8795 2.1725 0.6352
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000036677042.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:26:09
Heat of formation + Delta-G solvation = 68.481159 kcal
Electronic energy + Delta-G solvation = -19303.243384 eV
Core-core repulsion = 16466.881030 eV
Total energy + Delta-G solvation = -2836.362354 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.33770 -37.88278 -36.19377 -33.11618 -32.99011 -32.04068 -31.48356 -27.97628
-26.54535 -24.72923 -23.40866 -22.73472 -21.69812 -20.14235 -17.32320 -17.08931
-16.76849 -16.34438 -15.26535 -15.13879 -14.57224 -14.41684 -13.83861 -13.63333
-13.54402 -13.23517 -12.88551 -12.81663 -12.53863 -12.39674 -12.00156 -11.81846
-11.63352 -11.45505 -11.23366 -10.89756 -10.65938 -10.62073 -10.38038 -10.05627
-9.64457 -9.45705 -9.31657 -8.74765 -8.64889 -7.66910 -6.13259 -4.11558
1.14431 1.39148 2.99279 3.03890 3.21493 3.29807 3.30960 3.83169
4.15275 4.33891 4.46727 4.71159 4.93011 4.94961 5.13865 5.14363
5.19218 5.21298 5.35938 5.52223 5.57241 5.67430 5.79126 5.89794
5.99106 6.11613 6.23784 6.24271 6.40671 6.46393 6.64478 6.71403
6.75237 6.78488 7.43144 7.67411 7.77078 7.83475 8.00535 8.52680
8.95891 9.47617 10.99467
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.019786 B = 0.006577 C = 0.005630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1414.777534 B = 4256.488117 C = 4971.949080
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.006 4.006
3 H 0.110 0.890
4 C 0.221 3.779
5 N -0.453 5.453
6 C 0.069 3.931
7 N -0.515 5.515
8 C 0.164 3.836
9 C -0.511 4.511
10 H 0.084 0.916
11 C 0.071 3.929
12 N -0.897 5.897
13 Si 0.872 3.128
14 H -0.276 1.276
15 H -0.287 1.287
16 H -0.268 1.268
17 C 0.085 3.915
18 C -0.115 4.115
19 C -0.050 4.050
20 C -0.172 4.172
21 C 0.085 3.915
22 N -0.488 5.488
23 C 0.091 3.909
24 H 0.066 0.934
25 H 0.088 0.912
26 H 0.044 0.956
27 H 0.033 0.967
28 H 0.099 0.901
29 H -0.008 1.008
30 H 0.028 0.972
31 H 0.264 0.736
32 H 0.043 0.957
33 H 0.085 0.915
34 H 0.141 0.859
35 H 0.132 0.868
36 H 0.150 0.850
37 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.130 13.918 -3.374 14.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.027 4.027
3 H 0.127 0.873
4 C -0.097 4.097
5 N -0.129 5.129
6 C -0.061 4.061
7 N -0.239 5.239
8 C 0.039 3.961
9 C -0.550 4.550
10 H 0.102 0.898
11 C -0.132 4.132
12 N -0.535 5.535
13 Si 0.700 3.300
14 H -0.202 1.202
15 H -0.213 1.213
16 H -0.193 1.193
17 C -0.044 4.044
18 C -0.117 4.117
19 C -0.076 4.076
20 C -0.192 4.192
21 C -0.072 4.072
22 N -0.196 5.196
23 C -0.066 4.066
24 H 0.085 0.915
25 H 0.106 0.894
26 H 0.063 0.937
27 H 0.052 0.948
28 H 0.117 0.883
29 H 0.009 0.991
30 H 0.046 0.954
31 H 0.074 0.926
32 H 0.061 0.939
33 H 0.104 0.896
34 H 0.158 0.842
35 H 0.150 0.850
36 H 0.167 0.833
37 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 4.716 13.350 -5.400 15.153
hybrid contribution 0.481 -0.424 2.075 2.172
sum 5.197 12.926 -3.325 14.323
Atomic orbital electron populations
1.21638 0.91158 1.03925 1.01981 1.19290 0.98394 0.98970 0.86094
0.87266 1.29434 0.92701 0.93162 0.94442 1.81134 1.09784 1.09896
1.12083 1.22058 0.96895 0.99043 0.88091 1.61794 1.49400 1.07924
1.04754 1.20237 0.96942 0.91448 0.87490 1.20993 1.13102 1.16545
1.04328 0.89800 1.24882 0.94872 0.95220 0.98182 1.69881 1.28289
1.22260 1.33078 0.86918 0.81299 0.77602 0.84219 1.20163 1.21258
1.19311 1.21156 0.95203 0.90275 0.97763 1.20979 0.95445 0.97776
0.97533 1.21528 0.95525 0.92576 0.97957 1.22159 1.01107 0.99050
0.96870 1.22672 0.89611 0.98166 0.96702 1.67671 1.18721 1.07431
1.25820 1.22639 0.99326 0.93706 0.90954 0.91492 0.89359 0.93675
0.94847 0.88315 0.99057 0.95374 0.92585 0.93887 0.89635 0.84158
0.85011 0.83308 0.83341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.88 8.95 37.16 0.33 -1.55 16
2 C -0.01 -0.08 2.53 -93.41 -0.24 -0.32 16
3 H 0.11 1.49 3.63 -51.93 -0.19 1.31 16
4 C 0.22 3.58 14.65 -20.76 -0.30 3.27 16
5 N -0.45 -8.21 18.54 42.15 0.78 -7.43 16
6 C 0.07 1.12 4.19 -3.83 -0.02 1.10 16
7 N -0.52 -8.63 3.77 -237.51 -0.90 -9.53 16
8 C 0.16 3.41 3.77 -4.98 -0.02 3.39 16
9 C -0.51 -12.97 8.94 -34.44 -0.31 -13.28 16
10 H 0.08 2.31 7.83 -52.48 -0.41 1.90 16
11 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16
12 N -0.90 -25.92 13.96 55.43 0.77 -25.15 16
13 Si 0.87 19.98 27.37 -169.99 -4.65 15.33 16
14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
16 H -0.27 -5.87 6.69 56.52 0.38 -5.49 16
17 C 0.08 1.14 5.22 -4.98 -0.03 1.11 16
18 C -0.11 -1.40 3.64 -104.48 -0.38 -1.78 16
19 C -0.05 -0.57 9.61 -39.28 -0.38 -0.95 16
20 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16
21 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16
22 N -0.49 -6.22 10.36 -13.25 -0.14 -6.36 16
23 C 0.09 1.11 8.60 -17.55 -0.15 0.95 16
24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
25 H 0.09 1.32 7.55 -51.93 -0.39 0.93 16
26 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16
27 H 0.03 0.50 7.63 -51.93 -0.40 0.11 16
28 H 0.10 1.87 6.95 -51.92 -0.36 1.51 16
29 H -0.01 -0.18 7.46 -51.93 -0.39 -0.56 16
30 H 0.03 0.58 6.82 -51.92 -0.35 0.22 16
31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
32 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16
33 H 0.09 1.12 7.61 -51.93 -0.40 0.72 16
34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16
35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16
36 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16
37 H 0.15 1.62 7.97 -52.48 -0.42 1.20 16
LS Contribution 311.43 15.07 4.69 4.69
Total: -1.00 -29.36 311.43 -6.58 -35.94
By element:
Atomic # 1 Polarization: 5.11 SS G_CDS: -4.96 Total: 0.15 kcal
Atomic # 6 Polarization: -5.46 SS G_CDS: -2.18 Total: -7.64 kcal
Atomic # 7 Polarization: -48.98 SS G_CDS: 0.52 Total: -48.46 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -4.65 Total: 15.33 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -29.36 -6.58 -35.94 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036677042.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.417 kcal
(2) G-P(sol) polarization free energy of solvation -29.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds