Wall clock time and date at job start Mon Mar 30 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47171 * 2 1 4 4 C 1.47199 * 109.47006 * 239.99617 * 2 1 3 5 5 N 2.60802 * 109.47252 * 239.99801 * 2 1 3 6 6 C 1.53002 * 109.46745 * 119.99738 * 2 1 3 7 7 N 1.46894 * 109.47534 * 297.62494 * 6 2 1 8 8 C 1.46900 * 111.00215 * 156.63734 * 7 6 2 9 9 C 1.50693 * 109.46912 * 288.14069 * 8 7 6 10 10 H 1.08004 * 120.00435 * 4.95889 * 9 8 7 11 11 C 1.37881 * 119.99962 * 184.95304 * 9 8 7 12 12 N 1.31512 * 120.00022 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47387 * 89.99924 * 13 11 9 15 15 H 1.48505 * 109.46899 * 209.99599 * 13 11 9 16 16 H 1.48497 * 109.47075 * 329.99413 * 13 11 9 17 17 C 1.46900 * 110.99657 * 280.59285 * 7 6 2 18 18 C 1.50701 * 109.47438 * 77.51272 * 17 7 6 19 19 C 1.38677 * 120.41644 * 69.12480 * 18 17 7 20 20 C 1.38626 * 118.41927 * 179.97438 * 19 18 17 21 21 C 1.38230 * 119.15991 * 0.25119 * 20 19 18 22 22 N 1.31854 * 120.76455 * 359.49801 * 21 20 19 23 23 C 1.31887 * 121.72323 * 0.49620 * 22 21 20 24 24 H 1.09000 * 109.47778 * 184.89739 * 1 2 3 25 25 H 1.09001 * 109.47664 * 304.90610 * 1 2 3 26 26 H 1.09009 * 109.47001 * 64.89978 * 1 2 3 27 27 H 1.09005 * 109.46946 * 177.62103 * 6 2 1 28 28 H 1.09009 * 109.47185 * 57.62600 * 6 2 1 29 29 H 1.08997 * 109.47114 * 48.14743 * 8 7 6 30 30 H 1.09007 * 109.46796 * 168.14251 * 8 7 6 31 31 H 0.97006 * 120.00047 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47450 * 317.51170 * 17 7 6 33 33 H 1.09006 * 109.47199 * 197.51169 * 17 7 6 34 34 H 1.07997 * 120.78771 * 359.96161 * 19 18 17 35 35 H 1.07998 * 120.42373 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.61818 * 179.75102 * 21 20 19 37 37 H 1.08005 * 119.61583 * 179.75079 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0399 -0.7212 1.2493 7 7 1.5977 0.0036 2.4480 8 6 1.5639 -0.8844 3.6177 9 6 0.4095 -1.8441 3.4866 10 1 -0.1859 -1.8529 2.5856 11 6 0.1134 -2.7112 4.5170 12 7 -0.8938 -3.5491 4.4024 13 14 1.1429 -2.6957 6.0757 14 1 0.5575 -1.7362 7.0461 15 1 1.1583 -4.0556 6.6722 16 1 2.5312 -2.2832 5.7478 17 6 2.4494 1.1737 2.6997 18 6 2.0679 2.2851 1.7561 19 6 0.8491 2.9328 1.8904 20 6 0.5406 3.9496 1.0001 21 6 1.4495 4.2782 0.0118 22 7 2.6015 3.6438 -0.0830 23 6 2.9283 2.6719 0.7465 24 1 -0.3635 -1.0239 0.0877 25 1 -0.3634 0.5880 0.8428 26 1 -0.3633 0.4360 -0.9307 27 1 3.1291 -0.7583 1.2283 28 1 1.6421 -1.7359 1.2709 29 1 2.4973 -1.4444 3.6758 30 1 1.4406 -0.2890 4.5224 31 1 -1.1023 -4.1588 5.1275 32 1 3.4934 0.9042 2.5404 33 1 2.3132 1.5077 3.7284 34 1 0.1566 2.6516 2.6700 35 1 -0.3997 4.4755 1.0749 36 1 1.2151 5.0665 -0.6883 37 1 3.8795 2.1725 0.6352 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:09 Heat of formation + Delta-G solvation = 68.481159 kcal Electronic energy + Delta-G solvation = -19303.243384 eV Core-core repulsion = 16466.881030 eV Total energy + Delta-G solvation = -2836.362354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33770 -37.88278 -36.19377 -33.11618 -32.99011 -32.04068 -31.48356 -27.97628 -26.54535 -24.72923 -23.40866 -22.73472 -21.69812 -20.14235 -17.32320 -17.08931 -16.76849 -16.34438 -15.26535 -15.13879 -14.57224 -14.41684 -13.83861 -13.63333 -13.54402 -13.23517 -12.88551 -12.81663 -12.53863 -12.39674 -12.00156 -11.81846 -11.63352 -11.45505 -11.23366 -10.89756 -10.65938 -10.62073 -10.38038 -10.05627 -9.64457 -9.45705 -9.31657 -8.74765 -8.64889 -7.66910 -6.13259 -4.11558 1.14431 1.39148 2.99279 3.03890 3.21493 3.29807 3.30960 3.83169 4.15275 4.33891 4.46727 4.71159 4.93011 4.94961 5.13865 5.14363 5.19218 5.21298 5.35938 5.52223 5.57241 5.67430 5.79126 5.89794 5.99106 6.11613 6.23784 6.24271 6.40671 6.46393 6.64478 6.71403 6.75237 6.78488 7.43144 7.67411 7.77078 7.83475 8.00535 8.52680 8.95891 9.47617 10.99467 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.006577 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.777534 B = 4256.488117 C = 4971.949080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 H 0.110 0.890 4 C 0.221 3.779 5 N -0.453 5.453 6 C 0.069 3.931 7 N -0.515 5.515 8 C 0.164 3.836 9 C -0.511 4.511 10 H 0.084 0.916 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.872 3.128 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.085 3.915 18 C -0.115 4.115 19 C -0.050 4.050 20 C -0.172 4.172 21 C 0.085 3.915 22 N -0.488 5.488 23 C 0.091 3.909 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.099 0.901 29 H -0.008 1.008 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 13.918 -3.374 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.027 4.027 3 H 0.127 0.873 4 C -0.097 4.097 5 N -0.129 5.129 6 C -0.061 4.061 7 N -0.239 5.239 8 C 0.039 3.961 9 C -0.550 4.550 10 H 0.102 0.898 11 C -0.132 4.132 12 N -0.535 5.535 13 Si 0.700 3.300 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.044 4.044 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.192 4.192 21 C -0.072 4.072 22 N -0.196 5.196 23 C -0.066 4.066 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.009 0.991 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.716 13.350 -5.400 15.153 hybrid contribution 0.481 -0.424 2.075 2.172 sum 5.197 12.926 -3.325 14.323 Atomic orbital electron populations 1.21638 0.91158 1.03925 1.01981 1.19290 0.98394 0.98970 0.86094 0.87266 1.29434 0.92701 0.93162 0.94442 1.81134 1.09784 1.09896 1.12083 1.22058 0.96895 0.99043 0.88091 1.61794 1.49400 1.07924 1.04754 1.20237 0.96942 0.91448 0.87490 1.20993 1.13102 1.16545 1.04328 0.89800 1.24882 0.94872 0.95220 0.98182 1.69881 1.28289 1.22260 1.33078 0.86918 0.81299 0.77602 0.84219 1.20163 1.21258 1.19311 1.21156 0.95203 0.90275 0.97763 1.20979 0.95445 0.97776 0.97533 1.21528 0.95525 0.92576 0.97957 1.22159 1.01107 0.99050 0.96870 1.22672 0.89611 0.98166 0.96702 1.67671 1.18721 1.07431 1.25820 1.22639 0.99326 0.93706 0.90954 0.91492 0.89359 0.93675 0.94847 0.88315 0.99057 0.95374 0.92585 0.93887 0.89635 0.84158 0.85011 0.83308 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.95 37.16 0.33 -1.55 16 2 C -0.01 -0.08 2.53 -93.41 -0.24 -0.32 16 3 H 0.11 1.49 3.63 -51.93 -0.19 1.31 16 4 C 0.22 3.58 14.65 -20.76 -0.30 3.27 16 5 N -0.45 -8.21 18.54 42.15 0.78 -7.43 16 6 C 0.07 1.12 4.19 -3.83 -0.02 1.10 16 7 N -0.52 -8.63 3.77 -237.51 -0.90 -9.53 16 8 C 0.16 3.41 3.77 -4.98 -0.02 3.39 16 9 C -0.51 -12.97 8.94 -34.44 -0.31 -13.28 16 10 H 0.08 2.31 7.83 -52.48 -0.41 1.90 16 11 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 12 N -0.90 -25.92 13.96 55.43 0.77 -25.15 16 13 Si 0.87 19.98 27.37 -169.99 -4.65 15.33 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -5.87 6.69 56.52 0.38 -5.49 16 17 C 0.08 1.14 5.22 -4.98 -0.03 1.11 16 18 C -0.11 -1.40 3.64 -104.48 -0.38 -1.78 16 19 C -0.05 -0.57 9.61 -39.28 -0.38 -0.95 16 20 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16 21 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 22 N -0.49 -6.22 10.36 -13.25 -0.14 -6.36 16 23 C 0.09 1.11 8.60 -17.55 -0.15 0.95 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 1.32 7.55 -51.93 -0.39 0.93 16 26 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.03 0.50 7.63 -51.93 -0.40 0.11 16 28 H 0.10 1.87 6.95 -51.92 -0.36 1.51 16 29 H -0.01 -0.18 7.46 -51.93 -0.39 -0.56 16 30 H 0.03 0.58 6.82 -51.92 -0.35 0.22 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 33 H 0.09 1.12 7.61 -51.93 -0.40 0.72 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.15 1.62 7.97 -52.48 -0.42 1.20 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -29.36 311.43 -6.58 -35.94 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.96 Total: 0.15 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.18 Total: -7.64 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.52 Total: -48.46 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.65 Total: 15.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.36 -6.58 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.417 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds