Wall clock time and date at job start Mon Mar 30 2020 05:26:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47171 * 2 1
4 4 C 1.47199 * 109.47006 * 239.99617 * 2 1 3
5 5 N 2.60802 * 109.47252 * 239.99801 * 2 1 3
6 6 C 1.53002 * 109.46745 * 119.99738 * 2 1 3
7 7 N 1.46894 * 109.47534 * 297.62494 * 6 2 1
8 8 C 1.46900 * 111.00215 * 156.63734 * 7 6 2
9 9 C 1.50693 * 109.46912 * 288.14069 * 8 7 6
10 10 H 1.08004 * 120.00435 * 4.95889 * 9 8 7
11 11 C 1.37881 * 119.99962 * 184.95304 * 9 8 7
12 12 N 1.31512 * 120.00022 * 180.02562 * 11 9 8
13 13 Si 1.86803 * 119.99743 * 0.02562 * 11 9 8
14 14 H 1.48495 * 109.47387 * 89.99924 * 13 11 9
15 15 H 1.48505 * 109.46899 * 209.99599 * 13 11 9
16 16 H 1.48497 * 109.47075 * 329.99413 * 13 11 9
17 17 C 1.46900 * 110.99657 * 280.59285 * 7 6 2
18 18 C 1.50701 * 109.47438 * 77.51272 * 17 7 6
19 19 C 1.38677 * 120.41644 * 69.12480 * 18 17 7
20 20 C 1.38626 * 118.41927 * 179.97438 * 19 18 17
21 21 C 1.38230 * 119.15991 * 0.25119 * 20 19 18
22 22 N 1.31854 * 120.76455 * 359.49801 * 21 20 19
23 23 C 1.31887 * 121.72323 * 0.49620 * 22 21 20
24 24 H 1.09000 * 109.47778 * 184.89739 * 1 2 3
25 25 H 1.09001 * 109.47664 * 304.90610 * 1 2 3
26 26 H 1.09009 * 109.47001 * 64.89978 * 1 2 3
27 27 H 1.09005 * 109.46946 * 177.62103 * 6 2 1
28 28 H 1.09009 * 109.47185 * 57.62600 * 6 2 1
29 29 H 1.08997 * 109.47114 * 48.14743 * 8 7 6
30 30 H 1.09007 * 109.46796 * 168.14251 * 8 7 6
31 31 H 0.97006 * 120.00047 * 180.02562 * 12 11 9
32 32 H 1.09000 * 109.47450 * 317.51170 * 17 7 6
33 33 H 1.09006 * 109.47199 * 197.51169 * 17 7 6
34 34 H 1.07997 * 120.78771 * 359.96161 * 19 18 17
35 35 H 1.07998 * 120.42373 * 179.97438 * 20 19 18
36 36 H 1.08006 * 119.61818 * 179.75102 * 21 20 19
37 37 H 1.08005 * 119.61583 * 179.75079 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0206 -0.6940 -1.2018
5 7 2.3994 -1.2295 -2.1294
6 6 2.0399 -0.7212 1.2493
7 7 1.5977 0.0036 2.4480
8 6 1.5639 -0.8844 3.6177
9 6 0.4095 -1.8441 3.4866
10 1 -0.1859 -1.8529 2.5856
11 6 0.1134 -2.7112 4.5170
12 7 -0.8938 -3.5491 4.4024
13 14 1.1429 -2.6957 6.0757
14 1 0.5575 -1.7362 7.0461
15 1 1.1583 -4.0556 6.6722
16 1 2.5312 -2.2832 5.7478
17 6 2.4494 1.1737 2.6997
18 6 2.0679 2.2851 1.7561
19 6 0.8491 2.9328 1.8904
20 6 0.5406 3.9496 1.0001
21 6 1.4495 4.2782 0.0118
22 7 2.6015 3.6438 -0.0830
23 6 2.9283 2.6719 0.7465
24 1 -0.3635 -1.0239 0.0877
25 1 -0.3634 0.5880 0.8428
26 1 -0.3633 0.4360 -0.9307
27 1 3.1291 -0.7583 1.2283
28 1 1.6421 -1.7359 1.2709
29 1 2.4973 -1.4444 3.6758
30 1 1.4406 -0.2890 4.5224
31 1 -1.1023 -4.1588 5.1275
32 1 3.4934 0.9042 2.5404
33 1 2.3132 1.5077 3.7284
34 1 0.1566 2.6516 2.6700
35 1 -0.3997 4.4755 1.0749
36 1 1.2151 5.0665 -0.6883
37 1 3.8795 2.1725 0.6352
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000036677042.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:26:08
Heat of formation + Delta-G solvation = 50.370978 kcal
Electronic energy + Delta-G solvation = -19304.028700 eV
Core-core repulsion = 16466.881030 eV
Total energy + Delta-G solvation = -2837.147670 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.26920 -39.14497 -37.56922 -34.85832 -34.20115 -33.27709 -32.50947 -29.61214
-27.72784 -26.03469 -24.30424 -24.16611 -22.90583 -21.49237 -18.88948 -18.57850
-17.77323 -17.31138 -16.53455 -16.44962 -15.93548 -15.75539 -15.30055 -14.79797
-14.64006 -14.45078 -14.22143 -14.13451 -13.75673 -13.74687 -13.50383 -13.16172
-12.82730 -12.80211 -12.57664 -12.36648 -12.16269 -11.92225 -11.80852 -11.74343
-11.37233 -10.68670 -10.52531 -10.23939 -9.66495 -9.03820 -8.18219 -6.19827
0.28864 0.51750 1.41735 1.44027 1.52431 1.64847 1.70543 2.42062
2.76378 3.02244 3.16677 3.47358 3.67970 3.86262 4.00493 4.07512
4.16610 4.25793 4.31640 4.33531 4.57713 4.69118 4.70993 4.80018
4.90160 4.97577 4.97929 5.03806 5.13552 5.19557 5.40456 5.45164
5.54946 5.63957 5.92088 6.05040 6.31742 6.48605 6.68846 6.89429
7.15371 7.43213 8.97914
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.019786 B = 0.006577 C = 0.005630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1414.777534 B = 4256.488117 C = 4971.949080
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.008 3.992
3 H 0.128 0.872
4 C 0.236 3.764
5 N -0.484 5.484
6 C 0.072 3.928
7 N -0.520 5.520
8 C 0.172 3.828
9 C -0.504 4.504
10 H 0.047 0.953
11 C 0.008 3.992
12 N -0.950 5.950
13 Si 0.939 3.061
14 H -0.266 1.266
15 H -0.294 1.294
16 H -0.247 1.247
17 C 0.086 3.914
18 C -0.122 4.122
19 C -0.058 4.058
20 C -0.165 4.165
21 C 0.082 3.918
22 N -0.510 5.510
23 C 0.084 3.916
24 H 0.042 0.958
25 H 0.086 0.914
26 H 0.063 0.937
27 H 0.049 0.951
28 H 0.064 0.936
29 H -0.008 1.008
30 H 0.040 0.960
31 H 0.263 0.737
32 H 0.058 0.942
33 H 0.092 0.908
34 H 0.139 0.861
35 H 0.159 0.841
36 H 0.175 0.825
37 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.292 16.259 -2.988 17.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.013 4.013
3 H 0.146 0.854
4 C -0.081 4.081
5 N -0.161 5.161
6 C -0.058 4.058
7 N -0.243 5.243
8 C 0.045 3.955
9 C -0.543 4.543
10 H 0.066 0.934
11 C -0.189 4.189
12 N -0.592 5.592
13 Si 0.763 3.237
14 H -0.191 1.191
15 H -0.221 1.221
16 H -0.170 1.170
17 C -0.042 4.042
18 C -0.124 4.124
19 C -0.084 4.084
20 C -0.184 4.184
21 C -0.074 4.074
22 N -0.219 5.219
23 C -0.072 4.072
24 H 0.062 0.938
25 H 0.105 0.895
26 H 0.082 0.918
27 H 0.067 0.933
28 H 0.082 0.918
29 H 0.010 0.990
30 H 0.058 0.942
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.110 0.890
34 H 0.157 0.843
35 H 0.176 0.824
36 H 0.192 0.808
37 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 5.900 15.724 -5.029 17.531
hybrid contribution 0.059 -1.070 1.857 2.144
sum 5.959 14.654 -3.172 16.134
Atomic orbital electron populations
1.21578 0.91180 1.02565 1.02887 1.19252 0.98151 0.99331 0.84604
0.85437 1.29645 0.91841 0.92386 0.94217 1.81149 1.10866 1.10873
1.13175 1.21954 0.97632 0.97484 0.88701 1.61627 1.51236 1.08043
1.03392 1.20000 0.94642 0.91289 0.89524 1.21294 1.13506 1.16921
1.02577 0.93445 1.25764 0.96145 0.95046 1.01979 1.70052 1.30872
1.23908 1.34352 0.85848 0.80600 0.77317 0.79926 1.19084 1.22060
1.17043 1.21194 0.95347 0.88965 0.98697 1.20816 0.96068 0.97837
0.97704 1.21663 0.95323 0.93041 0.98360 1.22420 1.01921 0.98279
0.95797 1.23158 0.88984 0.98215 0.97075 1.67711 1.19836 1.07983
1.26360 1.22776 0.99752 0.93870 0.90844 0.93834 0.89479 0.91835
0.93305 0.91751 0.99048 0.94194 0.92847 0.92381 0.88961 0.84272
0.82379 0.80844 0.82470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.56 8.95 71.98 0.64 -2.91 16
2 C 0.01 0.23 2.53 -12.60 -0.03 0.20 16
3 H 0.13 3.22 3.63 -2.39 -0.01 3.21 16
4 C 0.24 7.48 14.65 89.44 1.31 8.79 16
5 N -0.48 -17.28 18.54 20.01 0.37 -16.91 16
6 C 0.07 2.29 4.19 86.31 0.36 2.65 16
7 N -0.52 -16.74 3.77 -905.35 -3.41 -20.15 16
8 C 0.17 6.92 3.77 85.55 0.32 7.24 16
9 C -0.50 -25.99 8.94 25.60 0.23 -25.76 16
10 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16
11 C 0.01 0.41 5.47 84.66 0.46 0.87 16
12 N -0.95 -56.75 13.96 21.45 0.30 -56.46 16
13 Si 0.94 40.89 27.37 68.60 1.88 42.76 16
14 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
16 H -0.25 -9.80 6.69 99.48 0.67 -9.14 16
17 C 0.09 2.10 5.22 85.56 0.45 2.54 16
18 C -0.12 -2.66 3.64 -19.77 -0.07 -2.74 16
19 C -0.06 -1.18 9.61 22.47 0.22 -0.96 16
20 C -0.16 -2.77 10.11 22.36 0.23 -2.54 16
21 C 0.08 1.50 11.18 84.69 0.95 2.45 16
22 N -0.51 -11.65 10.36 -195.84 -2.03 -13.68 16
23 C 0.08 1.84 8.60 84.67 0.73 2.56 16
24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
25 H 0.09 2.54 7.55 -2.39 -0.02 2.52 16
26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16
27 H 0.05 1.39 7.63 -2.38 -0.02 1.38 16
28 H 0.06 2.50 6.95 -2.38 -0.02 2.48 16
29 H -0.01 -0.33 7.46 -2.39 -0.02 -0.35 16
30 H 0.04 1.54 6.82 -2.38 -0.02 1.52 16
31 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16
32 H 0.06 1.26 7.43 -2.39 -0.02 1.25 16
33 H 0.09 2.14 7.61 -2.38 -0.02 2.13 16
34 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16
35 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16
36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16
37 H 0.16 3.02 7.97 -2.91 -0.02 3.00 16
Total: -1.00 -64.19 311.43 3.92 -60.28
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal
Atomic # 6 Polarization: -13.39 SS G_CDS: 5.79 Total: -7.60 kcal
Atomic # 7 Polarization: -102.43 SS G_CDS: -4.77 Total: -107.20 kcal
Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.76 kcal
Total: -64.19 3.92 -60.28 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036677042.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.648 kcal
(2) G-P(sol) polarization free energy of solvation -64.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds