Wall clock time and date at job start Mon Mar 30 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47171 * 2 1 4 4 C 1.47199 * 109.47006 * 239.99617 * 2 1 3 5 5 N 2.60802 * 109.47252 * 239.99801 * 2 1 3 6 6 C 1.53002 * 109.46745 * 119.99738 * 2 1 3 7 7 N 1.46894 * 109.47534 * 297.62494 * 6 2 1 8 8 C 1.46900 * 111.00215 * 156.63734 * 7 6 2 9 9 C 1.50693 * 109.46912 * 288.14069 * 8 7 6 10 10 H 1.08004 * 120.00435 * 4.95889 * 9 8 7 11 11 C 1.37881 * 119.99962 * 184.95304 * 9 8 7 12 12 N 1.31512 * 120.00022 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47387 * 89.99924 * 13 11 9 15 15 H 1.48505 * 109.46899 * 209.99599 * 13 11 9 16 16 H 1.48497 * 109.47075 * 329.99413 * 13 11 9 17 17 C 1.46900 * 110.99657 * 280.59285 * 7 6 2 18 18 C 1.50701 * 109.47438 * 77.51272 * 17 7 6 19 19 C 1.38677 * 120.41644 * 69.12480 * 18 17 7 20 20 C 1.38626 * 118.41927 * 179.97438 * 19 18 17 21 21 C 1.38230 * 119.15991 * 0.25119 * 20 19 18 22 22 N 1.31854 * 120.76455 * 359.49801 * 21 20 19 23 23 C 1.31887 * 121.72323 * 0.49620 * 22 21 20 24 24 H 1.09000 * 109.47778 * 184.89739 * 1 2 3 25 25 H 1.09001 * 109.47664 * 304.90610 * 1 2 3 26 26 H 1.09009 * 109.47001 * 64.89978 * 1 2 3 27 27 H 1.09005 * 109.46946 * 177.62103 * 6 2 1 28 28 H 1.09009 * 109.47185 * 57.62600 * 6 2 1 29 29 H 1.08997 * 109.47114 * 48.14743 * 8 7 6 30 30 H 1.09007 * 109.46796 * 168.14251 * 8 7 6 31 31 H 0.97006 * 120.00047 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47450 * 317.51170 * 17 7 6 33 33 H 1.09006 * 109.47199 * 197.51169 * 17 7 6 34 34 H 1.07997 * 120.78771 * 359.96161 * 19 18 17 35 35 H 1.07998 * 120.42373 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.61818 * 179.75102 * 21 20 19 37 37 H 1.08005 * 119.61583 * 179.75079 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0399 -0.7212 1.2493 7 7 1.5977 0.0036 2.4480 8 6 1.5639 -0.8844 3.6177 9 6 0.4095 -1.8441 3.4866 10 1 -0.1859 -1.8529 2.5856 11 6 0.1134 -2.7112 4.5170 12 7 -0.8938 -3.5491 4.4024 13 14 1.1429 -2.6957 6.0757 14 1 0.5575 -1.7362 7.0461 15 1 1.1583 -4.0556 6.6722 16 1 2.5312 -2.2832 5.7478 17 6 2.4494 1.1737 2.6997 18 6 2.0679 2.2851 1.7561 19 6 0.8491 2.9328 1.8904 20 6 0.5406 3.9496 1.0001 21 6 1.4495 4.2782 0.0118 22 7 2.6015 3.6438 -0.0830 23 6 2.9283 2.6719 0.7465 24 1 -0.3635 -1.0239 0.0877 25 1 -0.3634 0.5880 0.8428 26 1 -0.3633 0.4360 -0.9307 27 1 3.1291 -0.7583 1.2283 28 1 1.6421 -1.7359 1.2709 29 1 2.4973 -1.4444 3.6758 30 1 1.4406 -0.2890 4.5224 31 1 -1.1023 -4.1588 5.1275 32 1 3.4934 0.9042 2.5404 33 1 2.3132 1.5077 3.7284 34 1 0.1566 2.6516 2.6700 35 1 -0.3997 4.4755 1.0749 36 1 1.2151 5.0665 -0.6883 37 1 3.8795 2.1725 0.6352 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:08 Heat of formation + Delta-G solvation = 50.370978 kcal Electronic energy + Delta-G solvation = -19304.028700 eV Core-core repulsion = 16466.881030 eV Total energy + Delta-G solvation = -2837.147670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26920 -39.14497 -37.56922 -34.85832 -34.20115 -33.27709 -32.50947 -29.61214 -27.72784 -26.03469 -24.30424 -24.16611 -22.90583 -21.49237 -18.88948 -18.57850 -17.77323 -17.31138 -16.53455 -16.44962 -15.93548 -15.75539 -15.30055 -14.79797 -14.64006 -14.45078 -14.22143 -14.13451 -13.75673 -13.74687 -13.50383 -13.16172 -12.82730 -12.80211 -12.57664 -12.36648 -12.16269 -11.92225 -11.80852 -11.74343 -11.37233 -10.68670 -10.52531 -10.23939 -9.66495 -9.03820 -8.18219 -6.19827 0.28864 0.51750 1.41735 1.44027 1.52431 1.64847 1.70543 2.42062 2.76378 3.02244 3.16677 3.47358 3.67970 3.86262 4.00493 4.07512 4.16610 4.25793 4.31640 4.33531 4.57713 4.69118 4.70993 4.80018 4.90160 4.97577 4.97929 5.03806 5.13552 5.19557 5.40456 5.45164 5.54946 5.63957 5.92088 6.05040 6.31742 6.48605 6.68846 6.89429 7.15371 7.43213 8.97914 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.006577 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.777534 B = 4256.488117 C = 4971.949080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.008 3.992 3 H 0.128 0.872 4 C 0.236 3.764 5 N -0.484 5.484 6 C 0.072 3.928 7 N -0.520 5.520 8 C 0.172 3.828 9 C -0.504 4.504 10 H 0.047 0.953 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.939 3.061 14 H -0.266 1.266 15 H -0.294 1.294 16 H -0.247 1.247 17 C 0.086 3.914 18 C -0.122 4.122 19 C -0.058 4.058 20 C -0.165 4.165 21 C 0.082 3.918 22 N -0.510 5.510 23 C 0.084 3.916 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.064 0.936 29 H -0.008 1.008 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.175 0.825 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 16.259 -2.988 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.013 4.013 3 H 0.146 0.854 4 C -0.081 4.081 5 N -0.161 5.161 6 C -0.058 4.058 7 N -0.243 5.243 8 C 0.045 3.955 9 C -0.543 4.543 10 H 0.066 0.934 11 C -0.189 4.189 12 N -0.592 5.592 13 Si 0.763 3.237 14 H -0.191 1.191 15 H -0.221 1.221 16 H -0.170 1.170 17 C -0.042 4.042 18 C -0.124 4.124 19 C -0.084 4.084 20 C -0.184 4.184 21 C -0.074 4.074 22 N -0.219 5.219 23 C -0.072 4.072 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.010 0.990 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.157 0.843 35 H 0.176 0.824 36 H 0.192 0.808 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.900 15.724 -5.029 17.531 hybrid contribution 0.059 -1.070 1.857 2.144 sum 5.959 14.654 -3.172 16.134 Atomic orbital electron populations 1.21578 0.91180 1.02565 1.02887 1.19252 0.98151 0.99331 0.84604 0.85437 1.29645 0.91841 0.92386 0.94217 1.81149 1.10866 1.10873 1.13175 1.21954 0.97632 0.97484 0.88701 1.61627 1.51236 1.08043 1.03392 1.20000 0.94642 0.91289 0.89524 1.21294 1.13506 1.16921 1.02577 0.93445 1.25764 0.96145 0.95046 1.01979 1.70052 1.30872 1.23908 1.34352 0.85848 0.80600 0.77317 0.79926 1.19084 1.22060 1.17043 1.21194 0.95347 0.88965 0.98697 1.20816 0.96068 0.97837 0.97704 1.21663 0.95323 0.93041 0.98360 1.22420 1.01921 0.98279 0.95797 1.23158 0.88984 0.98215 0.97075 1.67711 1.19836 1.07983 1.26360 1.22776 0.99752 0.93870 0.90844 0.93834 0.89479 0.91835 0.93305 0.91751 0.99048 0.94194 0.92847 0.92381 0.88961 0.84272 0.82379 0.80844 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.95 71.98 0.64 -2.91 16 2 C 0.01 0.23 2.53 -12.60 -0.03 0.20 16 3 H 0.13 3.22 3.63 -2.39 -0.01 3.21 16 4 C 0.24 7.48 14.65 89.44 1.31 8.79 16 5 N -0.48 -17.28 18.54 20.01 0.37 -16.91 16 6 C 0.07 2.29 4.19 86.31 0.36 2.65 16 7 N -0.52 -16.74 3.77 -905.35 -3.41 -20.15 16 8 C 0.17 6.92 3.77 85.55 0.32 7.24 16 9 C -0.50 -25.99 8.94 25.60 0.23 -25.76 16 10 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 11 C 0.01 0.41 5.47 84.66 0.46 0.87 16 12 N -0.95 -56.75 13.96 21.45 0.30 -56.46 16 13 Si 0.94 40.89 27.37 68.60 1.88 42.76 16 14 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.25 -9.80 6.69 99.48 0.67 -9.14 16 17 C 0.09 2.10 5.22 85.56 0.45 2.54 16 18 C -0.12 -2.66 3.64 -19.77 -0.07 -2.74 16 19 C -0.06 -1.18 9.61 22.47 0.22 -0.96 16 20 C -0.16 -2.77 10.11 22.36 0.23 -2.54 16 21 C 0.08 1.50 11.18 84.69 0.95 2.45 16 22 N -0.51 -11.65 10.36 -195.84 -2.03 -13.68 16 23 C 0.08 1.84 8.60 84.67 0.73 2.56 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 2.54 7.55 -2.39 -0.02 2.52 16 26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.05 1.39 7.63 -2.38 -0.02 1.38 16 28 H 0.06 2.50 6.95 -2.38 -0.02 2.48 16 29 H -0.01 -0.33 7.46 -2.39 -0.02 -0.35 16 30 H 0.04 1.54 6.82 -2.38 -0.02 1.52 16 31 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 32 H 0.06 1.26 7.43 -2.39 -0.02 1.25 16 33 H 0.09 2.14 7.61 -2.38 -0.02 2.13 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.16 3.02 7.97 -2.91 -0.02 3.00 16 Total: -1.00 -64.19 311.43 3.92 -60.28 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.79 Total: -7.60 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.77 Total: -107.20 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.76 kcal Total: -64.19 3.92 -60.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.648 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds