Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47059 * 2 1 4 4 N 1.46906 * 109.47061 * 119.99217 * 2 1 3 5 5 C 1.52998 * 109.47235 * 239.99564 * 2 1 3 6 6 H 1.08992 * 109.47187 * 300.00034 * 5 2 1 7 7 C 1.50707 * 109.47064 * 60.00209 * 5 2 1 8 8 C 1.38234 * 119.99567 * 238.66529 * 7 5 2 9 9 C 1.38237 * 119.99547 * 179.97438 * 8 7 5 10 10 C 1.38235 * 120.00302 * 359.97093 * 9 8 7 11 11 C 1.38239 * 119.99651 * 0.02562 * 10 9 8 12 12 C 1.38227 * 120.00207 * 0.06952 * 11 10 9 13 13 N 1.46503 * 109.47115 * 179.97438 * 5 2 1 14 14 C 1.36932 * 119.99791 * 125.46808 * 13 5 2 15 15 H 1.08000 * 120.00511 * 347.31267 * 14 13 5 16 16 C 1.38814 * 119.99980 * 167.30986 * 14 13 5 17 17 N 1.31618 * 119.99878 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00184 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47370 * 60.00457 * 18 16 14 20 20 H 1.48498 * 109.47311 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47324 * 300.00220 * 18 16 14 22 22 C 1.46503 * 120.00064 * 305.47185 * 13 5 2 23 23 C 1.47200 * 109.46949 * 262.69758 * 22 13 5 24 24 N 5.07579 * 132.25049 * 291.35252 * 2 1 3 25 25 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47331 * 300.00046 * 1 2 3 27 27 H 1.08994 * 109.47319 * 60.00293 * 1 2 3 28 28 H 1.00898 * 110.99886 * 180.02562 * 4 2 1 29 29 H 1.00895 * 111.00412 * 303.95743 * 4 2 1 30 30 H 1.08000 * 120.00287 * 359.97229 * 8 7 5 31 31 H 1.07997 * 119.99726 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.00312 * 179.72613 * 10 9 8 33 33 H 1.08001 * 119.99768 * 179.97438 * 11 10 9 34 34 H 1.08005 * 120.00454 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00464 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.46907 * 22.70011 * 22 13 5 37 37 H 1.08996 * 109.46881 * 142.69300 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0400 -0.7213 -1.2492 6 1 1.6767 -1.7489 -1.2491 7 6 1.5377 -0.0109 -2.4797 8 6 0.7659 -0.6906 -3.4034 9 6 0.3047 -0.0389 -4.5319 10 6 0.6148 1.2926 -4.7364 11 6 1.3865 1.9723 -3.8125 12 6 1.8493 1.3201 -2.6851 13 7 3.5050 -0.7208 -1.2494 14 6 4.1900 -1.9010 -1.3623 15 1 3.6702 -2.8405 -1.2456 16 6 5.5527 -1.8901 -1.6269 17 7 6.1861 -0.7452 -1.7697 18 14 6.4874 -3.5001 -1.7801 19 1 5.9130 -4.3022 -2.8900 20 1 7.9177 -3.2173 -2.0619 21 1 6.3747 -4.2608 -0.5098 22 6 4.2371 0.5425 -1.1289 23 6 4.6347 1.0088 -2.4673 24 7 4.9428 1.3680 -3.4993 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.0282 -0.7054 1.2231 29 1 1.6441 -0.2738 2.0373 30 1 0.5232 -1.7308 -3.2435 31 1 -0.2979 -0.5700 -5.2538 32 1 0.2582 1.8006 -5.6202 33 1 1.6292 3.0124 -3.9725 34 1 2.4527 1.8509 -1.9635 35 1 7.1383 -0.7375 -1.9550 36 1 3.5975 1.2896 -0.6589 37 1 5.1268 0.3899 -0.5180 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042900891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = 86.882811 kcal Electronic energy + Delta-G solvation = -20045.920602 eV Core-core repulsion = 17210.356204 eV Total energy + Delta-G solvation = -2835.564399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.33457 -36.90769 -35.05373 -33.69140 -31.70212 -30.52872 -30.12931 -28.24383 -27.36646 -25.63258 -22.34905 -22.12007 -21.37837 -19.16235 -17.57123 -16.42705 -15.92137 -15.67924 -15.09749 -14.92857 -14.20287 -14.12301 -13.89664 -13.40107 -13.01399 -12.68380 -12.34761 -12.09506 -11.80207 -11.62007 -11.39871 -11.39035 -11.03333 -10.94926 -10.90354 -10.74629 -10.50059 -10.37587 -10.05006 -9.95272 -9.89436 -8.77390 -8.38624 -8.20992 -8.07883 -7.24712 -5.90609 -3.36916 1.89900 1.92521 3.33818 3.39644 3.40532 4.16307 4.35414 4.46799 4.68047 4.95049 5.24698 5.29829 5.39663 5.42036 5.44914 5.56114 5.57374 5.79708 5.82100 5.93461 6.01934 6.06548 6.18219 6.27386 6.41042 6.48242 6.53685 6.61008 6.68708 6.96244 7.00255 7.22428 7.26804 7.53230 7.60510 7.71757 8.05359 8.10437 8.98992 9.42014 9.59061 9.99474 11.10614 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.008997 C = 0.007618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.765404 B = 3111.269758 C = 3674.616054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.030 0.970 4 N -0.839 5.839 5 C 0.214 3.786 6 H 0.084 0.916 7 C -0.074 4.074 8 C -0.115 4.115 9 C -0.125 4.125 10 C -0.136 4.136 11 C -0.117 4.117 12 C -0.107 4.107 13 N -0.574 5.574 14 C -0.241 4.241 15 H 0.084 0.916 16 C -0.003 4.003 17 N -0.918 5.918 18 Si 0.920 3.080 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.256 3.744 23 C 0.261 3.739 24 N -0.520 5.520 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.355 0.645 29 H 0.326 0.674 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.260 0.740 36 H 0.043 0.957 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 3.029 3.862 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 H 0.048 0.952 4 N -0.370 5.370 5 C 0.106 3.894 6 H 0.102 0.898 7 C -0.077 4.077 8 C -0.134 4.134 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.135 4.135 12 C -0.125 4.125 13 N -0.293 5.293 14 C -0.369 4.369 15 H 0.102 0.898 16 C -0.199 4.199 17 N -0.565 5.565 18 Si 0.750 3.250 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.127 3.873 23 C -0.056 4.056 24 N -0.203 5.203 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.171 0.829 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.560 2.868 2.056 11.134 hybrid contribution 1.103 -0.074 0.099 1.110 sum -9.457 2.794 2.156 10.094 Atomic orbital electron populations 1.21778 0.95204 1.02079 1.00914 1.21698 0.94342 0.95182 0.92121 0.95201 1.58596 1.15630 1.59858 1.02952 1.19548 0.84018 0.97761 0.88071 0.89788 1.20737 0.94872 0.93786 0.98316 1.20985 0.98510 0.99405 0.94471 1.21000 1.00875 0.94826 0.97608 1.20944 1.00330 0.94989 0.99140 1.21010 0.98099 0.99530 0.94865 1.21082 0.98872 0.94727 0.97869 1.44198 0.98750 1.02788 1.83533 1.19396 0.90903 0.85148 1.41470 0.89843 1.24913 0.97243 0.97449 1.00257 1.69630 1.09622 1.23046 1.54167 0.86071 0.78678 0.82231 0.78041 1.21159 1.21699 1.20766 1.18669 0.96818 0.85441 0.86388 1.29988 0.90107 0.89790 0.95747 1.80761 1.13019 1.13482 1.12995 0.92127 0.93533 0.92339 0.82947 0.86258 0.86619 0.86983 0.87153 0.87136 0.86564 0.92901 0.93924 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.21 37.16 0.34 -1.52 16 2 C 0.08 1.20 2.58 -67.71 -0.17 1.03 16 3 H 0.03 0.46 5.76 -51.92 -0.30 0.16 16 4 N -0.84 -12.27 9.24 -4.66 -0.04 -12.32 16 5 C 0.21 3.89 2.22 -69.08 -0.15 3.74 16 6 H 0.08 1.61 7.54 -51.93 -0.39 1.22 16 7 C -0.07 -1.34 3.65 -104.62 -0.38 -1.72 16 8 C -0.11 -1.96 9.67 -39.58 -0.38 -2.35 16 9 C -0.12 -1.98 10.05 -39.58 -0.40 -2.37 16 10 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 11 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 12 C -0.11 -1.94 6.76 -39.59 -0.27 -2.20 16 13 N -0.57 -12.25 1.74 -170.29 -0.30 -12.54 16 14 C -0.24 -5.85 9.74 -15.06 -0.15 -6.00 16 15 H 0.08 2.01 7.69 -52.49 -0.40 1.60 16 16 C 0.00 -0.07 5.36 -17.43 -0.09 -0.16 16 17 N -0.92 -24.39 7.98 55.49 0.44 -23.95 16 18 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.26 5.41 4.55 -6.83 -0.03 5.37 16 23 C 0.26 6.32 10.18 -20.78 -0.21 6.11 16 24 N -0.52 -13.63 18.53 42.13 0.78 -12.85 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 28 H 0.36 5.72 8.41 -39.29 -0.33 5.39 16 29 H 0.33 3.94 8.99 -39.29 -0.35 3.59 16 30 H 0.12 1.81 7.95 -52.49 -0.42 1.39 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.12 2.10 4.63 -52.48 -0.24 1.86 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.04 0.77 4.83 -51.93 -0.25 0.52 16 37 H 0.13 2.85 6.30 -51.93 -0.33 2.52 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -28.54 300.47 -6.94 -35.49 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.64 Total: 10.56 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.69 Total: -5.02 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.88 Total: -61.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.54 -6.94 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042900891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.368 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds