Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47059 * 2 1 4 4 N 1.46906 * 109.47061 * 119.99217 * 2 1 3 5 5 C 1.52998 * 109.47235 * 239.99564 * 2 1 3 6 6 H 1.08992 * 109.47187 * 300.00034 * 5 2 1 7 7 C 1.50707 * 109.47064 * 60.00209 * 5 2 1 8 8 C 1.38234 * 119.99567 * 238.66529 * 7 5 2 9 9 C 1.38237 * 119.99547 * 179.97438 * 8 7 5 10 10 C 1.38235 * 120.00302 * 359.97093 * 9 8 7 11 11 C 1.38239 * 119.99651 * 0.02562 * 10 9 8 12 12 C 1.38227 * 120.00207 * 0.06952 * 11 10 9 13 13 N 1.46503 * 109.47115 * 179.97438 * 5 2 1 14 14 C 1.36932 * 119.99791 * 125.46808 * 13 5 2 15 15 H 1.08000 * 120.00511 * 347.31267 * 14 13 5 16 16 C 1.38814 * 119.99980 * 167.30986 * 14 13 5 17 17 N 1.31618 * 119.99878 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00184 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47370 * 60.00457 * 18 16 14 20 20 H 1.48498 * 109.47311 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47324 * 300.00220 * 18 16 14 22 22 C 1.46503 * 120.00064 * 305.47185 * 13 5 2 23 23 C 1.47200 * 109.46949 * 262.69758 * 22 13 5 24 24 N 5.07579 * 132.25049 * 291.35252 * 2 1 3 25 25 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47331 * 300.00046 * 1 2 3 27 27 H 1.08994 * 109.47319 * 60.00293 * 1 2 3 28 28 H 1.00898 * 110.99886 * 180.02562 * 4 2 1 29 29 H 1.00895 * 111.00412 * 303.95743 * 4 2 1 30 30 H 1.08000 * 120.00287 * 359.97229 * 8 7 5 31 31 H 1.07997 * 119.99726 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.00312 * 179.72613 * 10 9 8 33 33 H 1.08001 * 119.99768 * 179.97438 * 11 10 9 34 34 H 1.08005 * 120.00454 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00464 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.46907 * 22.70011 * 22 13 5 37 37 H 1.08996 * 109.46881 * 142.69300 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0400 -0.7213 -1.2492 6 1 1.6767 -1.7489 -1.2491 7 6 1.5377 -0.0109 -2.4797 8 6 0.7659 -0.6906 -3.4034 9 6 0.3047 -0.0389 -4.5319 10 6 0.6148 1.2926 -4.7364 11 6 1.3865 1.9723 -3.8125 12 6 1.8493 1.3201 -2.6851 13 7 3.5050 -0.7208 -1.2494 14 6 4.1900 -1.9010 -1.3623 15 1 3.6702 -2.8405 -1.2456 16 6 5.5527 -1.8901 -1.6269 17 7 6.1861 -0.7452 -1.7697 18 14 6.4874 -3.5001 -1.7801 19 1 5.9130 -4.3022 -2.8900 20 1 7.9177 -3.2173 -2.0619 21 1 6.3747 -4.2608 -0.5098 22 6 4.2371 0.5425 -1.1289 23 6 4.6347 1.0088 -2.4673 24 7 4.9428 1.3680 -3.4993 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.0282 -0.7054 1.2231 29 1 1.6441 -0.2738 2.0373 30 1 0.5232 -1.7308 -3.2435 31 1 -0.2979 -0.5700 -5.2538 32 1 0.2582 1.8006 -5.6202 33 1 1.6292 3.0124 -3.9725 34 1 2.4527 1.8509 -1.9635 35 1 7.1383 -0.7375 -1.9550 36 1 3.5975 1.2896 -0.6589 37 1 5.1268 0.3899 -0.5180 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042900891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = 70.166226 kcal Electronic energy + Delta-G solvation = -20046.645488 eV Core-core repulsion = 17210.356204 eV Total energy + Delta-G solvation = -2836.289284 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70895 -38.36689 -36.71669 -35.45247 -33.22891 -31.95580 -31.57668 -29.41262 -29.06960 -27.19152 -23.98439 -23.45946 -22.65202 -20.53685 -19.36784 -17.74191 -17.61859 -17.34217 -16.39342 -16.24932 -15.80643 -15.44918 -15.25160 -15.12964 -14.42608 -14.10536 -13.88539 -13.39640 -13.33443 -13.18349 -13.06247 -12.77895 -12.71993 -12.55654 -12.42347 -12.27323 -12.04133 -11.90313 -11.73188 -11.61732 -11.56449 -10.63044 -9.69175 -9.51647 -9.34459 -8.98192 -7.83684 -5.28320 0.58926 0.61837 1.50270 1.52184 1.56918 2.39245 2.58455 2.76966 3.01264 3.35378 3.69513 3.78260 4.00156 4.11961 4.20592 4.21467 4.30540 4.39399 4.52263 4.59105 4.72902 4.82063 4.92623 4.98282 5.15911 5.21949 5.26101 5.29093 5.45451 5.50572 5.65478 5.67959 5.70640 5.89540 6.23654 6.26076 6.53413 6.92715 7.09505 7.53383 7.78112 8.14486 9.13921 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.008997 C = 0.007618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.765404 B = 3111.269758 C = 3674.616054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.088 3.912 3 H 0.031 0.969 4 N -0.842 5.842 5 C 0.215 3.785 6 H 0.072 0.928 7 C -0.088 4.088 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.137 4.137 11 C -0.131 4.131 12 C -0.120 4.120 13 N -0.578 5.578 14 C -0.231 4.231 15 H 0.084 0.916 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.968 3.032 19 H -0.292 1.292 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.261 3.739 23 C 0.274 3.726 24 N -0.562 5.562 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.347 0.653 29 H 0.343 0.657 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 2.996 4.109 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 H 0.049 0.951 4 N -0.374 5.374 5 C 0.108 3.892 6 H 0.091 0.909 7 C -0.091 4.091 8 C -0.148 4.148 9 C -0.144 4.144 10 C -0.155 4.155 11 C -0.149 4.149 12 C -0.138 4.138 13 N -0.297 5.297 14 C -0.360 4.360 15 H 0.102 0.898 16 C -0.244 4.244 17 N -0.586 5.586 18 Si 0.798 3.202 19 H -0.219 1.219 20 H -0.232 1.232 21 H -0.195 1.195 22 C 0.132 3.868 23 C -0.043 4.043 24 N -0.245 5.245 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.480 2.829 2.332 13.008 hybrid contribution 1.555 -0.069 0.015 1.557 sum -10.925 2.760 2.347 11.510 Atomic orbital electron populations 1.21700 0.93396 1.02250 1.01815 1.21573 0.95624 0.94552 0.90789 0.95118 1.58568 1.15036 1.60175 1.03637 1.19661 0.81967 0.97734 0.89809 0.90942 1.20714 0.95952 0.94041 0.98418 1.21245 0.98648 1.00041 0.94826 1.21359 1.00476 0.94986 0.97547 1.21317 0.99402 0.95189 0.99598 1.21273 0.98363 1.00343 0.94915 1.21110 0.99371 0.94880 0.98464 1.44248 1.00114 1.01944 1.83435 1.19605 0.90905 0.86298 1.39235 0.89773 1.25424 0.98204 0.99204 1.01547 1.69803 1.08695 1.24024 1.56091 0.85303 0.76809 0.80066 0.78014 1.21925 1.23242 1.19503 1.18691 0.96982 0.86244 0.84861 1.30618 0.88953 0.88651 0.96031 1.80741 1.14459 1.14959 1.14366 0.92302 0.91459 0.92601 0.83909 0.84392 0.85688 0.84146 0.84456 0.86057 0.87102 0.94371 0.90458 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.21 71.98 0.66 -2.51 16 2 C 0.09 2.48 2.58 44.91 0.12 2.59 16 3 H 0.03 0.88 5.76 -2.38 -0.01 0.87 16 4 N -0.84 -23.03 9.24 -168.67 -1.56 -24.59 16 5 C 0.21 7.57 2.22 44.25 0.10 7.66 16 6 H 0.07 2.70 7.54 -2.39 -0.02 2.68 16 7 C -0.09 -3.09 3.65 -19.86 -0.07 -3.16 16 8 C -0.13 -4.18 9.67 22.27 0.22 -3.97 16 9 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 10 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 11 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 12 C -0.12 -4.19 6.76 22.27 0.15 -4.04 16 13 N -0.58 -24.30 1.74 -692.68 -1.20 -25.50 16 14 C -0.23 -11.12 9.74 84.03 0.82 -10.30 16 15 H 0.08 3.99 7.69 -2.91 -0.02 3.96 16 16 C -0.05 -2.60 5.36 84.86 0.45 -2.15 16 17 N -0.94 -50.43 7.98 21.65 0.17 -50.26 16 18 Si 0.97 43.66 29.55 68.60 2.03 45.69 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 C 0.26 10.93 4.55 84.57 0.38 11.32 16 23 C 0.27 13.26 10.18 89.45 0.91 14.17 16 24 N -0.56 -29.59 18.53 20.00 0.37 -29.22 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.37 7.22 -2.39 -0.02 1.35 16 28 H 0.35 10.69 8.41 -89.70 -0.75 9.93 16 29 H 0.34 7.44 8.99 -89.70 -0.81 6.63 16 30 H 0.13 3.71 7.95 -2.91 -0.02 3.69 16 31 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.11 3.89 4.63 -2.91 -0.01 3.88 16 35 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 36 H 0.08 2.69 4.83 -2.39 -0.01 2.68 16 37 H 0.11 5.00 6.30 -2.39 -0.02 4.99 16 Total: -1.00 -60.26 300.47 3.76 -56.50 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.45 Total: 28.99 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 4.41 Total: -1.61 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -2.22 Total: -129.58 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -60.26 3.76 -56.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042900891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.667 kcal (2) G-P(sol) polarization free energy of solvation -60.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds