Wall clock time and date at job start Mon Mar 30 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.99925 * 2 1 4 4 C 1.38235 * 120.00256 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99811 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47007 * 182.08358 * 6 5 4 8 8 C 1.53001 * 109.47039 * 302.08106 * 6 5 4 9 9 N 1.46896 * 109.47167 * 174.99950 * 8 6 5 10 10 N 1.46499 * 109.47296 * 62.08398 * 6 5 4 11 11 C 1.36938 * 120.00123 * 115.33565 * 10 6 5 12 12 H 1.08002 * 119.99778 * 9.80364 * 11 10 6 13 13 C 1.38809 * 119.99945 * 189.79741 * 11 10 6 14 14 N 1.31623 * 120.00059 * 9.66539 * 13 11 10 15 15 Si 1.86800 * 119.99780 * 189.66206 * 13 11 10 16 16 H 1.48499 * 109.47264 * 90.00644 * 15 13 11 17 17 H 1.48505 * 109.46762 * 210.00335 * 15 13 11 18 18 H 1.48499 * 109.47333 * 330.00047 * 15 13 11 19 19 C 1.46496 * 119.99829 * 295.06511 * 10 6 5 20 20 C 1.47209 * 109.47440 * 94.60521 * 19 10 6 21 21 N 4.39923 * 122.23822 * 51.18456 * 2 1 3 22 22 C 1.38237 * 120.00397 * 0.24889 * 5 4 3 23 23 C 1.38234 * 120.00364 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.46667 * 89.99866 * 1 2 3 25 25 H 1.08998 * 109.46715 * 209.99897 * 1 2 3 26 26 H 1.08998 * 109.47157 * 329.99673 * 1 2 3 27 27 H 1.08004 * 119.99942 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00149 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47143 * 295.00126 * 8 6 5 30 30 H 1.09001 * 109.46507 * 55.00274 * 8 6 5 31 31 H 1.00900 * 110.99941 * 56.04934 * 9 8 6 32 32 H 1.00898 * 111.00286 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99901 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47456 * 214.60521 * 19 10 6 35 35 H 1.09003 * 109.47056 * 334.60570 * 19 10 6 36 36 H 1.08000 * 120.00194 * 179.72890 * 22 5 4 37 37 H 1.08002 * 119.99565 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 1 6.1421 -1.0268 -0.0409 8 6 6.2878 0.7669 -1.2251 9 7 7.7518 0.8701 -1.1636 10 7 6.2681 0.6463 1.2176 11 6 6.9755 -0.0782 2.1395 12 1 7.3096 -1.0770 1.9003 13 6 7.2633 0.4712 3.3813 14 7 6.7005 1.6036 3.7464 15 14 8.4494 -0.3967 4.5343 16 1 9.8306 0.0847 4.2780 17 1 8.0759 -0.1030 5.9413 18 1 8.3843 -1.8617 4.3005 19 6 6.0056 2.0688 1.4489 20 6 4.7913 2.2171 2.2677 21 7 3.8538 2.3324 2.8993 22 6 3.5806 -1.1971 -0.0073 23 6 2.1983 -1.1971 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 5.9987 0.2370 -2.1327 30 1 5.8531 1.7664 -1.2338 31 1 8.1759 -0.0424 -1.0894 32 1 8.1127 1.3724 -1.9607 33 1 6.9014 1.9874 4.6143 34 1 6.8524 2.5144 1.9710 35 1 5.8627 2.5721 0.4926 36 1 4.1207 -2.1324 -0.0126 37 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042906349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:04 Heat of formation + Delta-G solvation = 84.976432 kcal Electronic energy + Delta-G solvation = -19711.974556 eV Core-core repulsion = 16876.327490 eV Total energy + Delta-G solvation = -2835.647065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.26146 -36.84600 -34.61233 -33.38834 -32.46361 -30.75312 -30.36025 -28.18916 -26.92984 -25.10678 -23.15766 -22.14403 -21.10137 -19.52329 -17.50334 -16.10079 -15.79955 -15.47975 -14.89969 -14.83646 -14.21023 -13.98855 -13.51750 -13.46330 -13.11506 -12.81810 -12.69437 -12.27582 -12.00412 -11.85994 -11.53419 -11.38949 -10.97366 -10.92152 -10.84057 -10.71834 -10.47194 -10.26267 -10.01117 -9.82454 -9.74147 -8.65728 -8.35057 -8.08148 -7.95593 -7.12301 -5.80359 -3.20627 1.86758 1.94661 3.38624 3.43460 3.46561 4.18651 4.38018 4.55435 4.75923 5.00673 5.19743 5.24578 5.38243 5.40398 5.49048 5.63103 5.69212 5.74492 5.77342 5.86561 6.00000 6.02518 6.05440 6.11910 6.21687 6.44471 6.57993 6.63065 6.80428 6.96263 7.05504 7.24803 7.42712 7.55010 7.64939 7.67881 7.95029 8.22973 9.09501 9.50055 9.71671 10.13131 11.23166 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.007648 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.850621 B = 3660.385332 C = 4084.726426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.114 4.114 4 C -0.101 4.101 5 C -0.085 4.085 6 C 0.209 3.791 7 H 0.073 0.927 8 C 0.053 3.947 9 N -0.827 5.827 10 N -0.557 5.557 11 C -0.236 4.236 12 H 0.079 0.921 13 C -0.004 4.004 14 N -0.915 5.915 15 Si 0.917 3.083 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.282 1.282 19 C 0.264 3.736 20 C 0.258 3.742 21 N -0.521 5.521 22 C -0.112 4.112 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.338 0.662 32 H 0.328 0.672 33 H 0.257 0.743 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.115 0.885 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -2.456 -12.215 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.119 4.119 5 C -0.088 4.088 6 C 0.101 3.899 7 H 0.091 0.909 8 C -0.079 4.079 9 N -0.356 5.356 10 N -0.275 5.275 11 C -0.365 4.365 12 H 0.096 0.904 13 C -0.201 4.201 14 N -0.562 5.562 15 Si 0.748 3.252 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.208 1.208 19 C 0.135 3.865 20 C -0.059 4.059 21 N -0.204 5.204 22 C -0.131 4.131 23 C -0.143 4.143 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.842 -1.816 -10.416 11.629 hybrid contribution 0.831 -1.113 -0.081 1.391 sum -4.010 -2.929 -10.497 11.613 Atomic orbital electron populations 1.20707 0.92041 1.02255 1.01441 1.19740 0.95426 0.93413 1.01850 1.20886 0.94388 0.96927 1.01017 1.21066 0.93807 0.97987 0.99060 1.20748 0.97756 0.92798 0.97482 1.19443 0.86872 0.96404 0.87196 0.90891 1.22260 0.88900 1.00474 0.96291 1.58411 1.04882 1.24243 1.48016 1.43843 1.59909 1.05004 1.18766 1.19331 1.25252 0.98742 0.93150 0.90365 1.24811 1.00335 0.97824 0.97082 1.69724 1.44749 1.20407 1.21344 0.86039 0.80655 0.78569 0.79938 1.21347 1.22002 1.20816 1.18517 0.90162 0.85692 0.92162 1.30362 0.92483 0.91019 0.92053 1.80787 1.16011 1.10430 1.13128 1.20942 0.93827 0.97514 1.00842 1.20859 0.94273 0.96891 1.02250 0.91887 0.92119 0.92007 0.87112 0.86334 0.96492 0.91404 0.84960 0.86088 0.93143 0.85895 0.93503 0.86725 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.10 -1.68 5.88 -104.62 -0.62 -2.30 16 3 C -0.11 -1.99 9.70 -39.58 -0.38 -2.37 16 4 C -0.10 -1.85 6.55 -39.58 -0.26 -2.11 16 5 C -0.08 -1.56 4.87 -104.62 -0.51 -2.07 16 6 C 0.21 3.82 2.66 -69.08 -0.18 3.64 16 7 H 0.07 1.32 7.53 -51.93 -0.39 0.93 16 8 C 0.05 0.80 5.80 -3.83 -0.02 0.78 16 9 N -0.83 -11.87 9.35 -10.37 -0.10 -11.97 16 10 N -0.56 -12.31 2.13 -170.29 -0.36 -12.68 16 11 C -0.24 -5.88 9.75 -15.06 -0.15 -6.02 16 12 H 0.08 1.89 7.69 -52.49 -0.40 1.49 16 13 C 0.00 -0.12 5.25 -17.43 -0.09 -0.21 16 14 N -0.92 -25.23 8.26 55.49 0.46 -24.77 16 15 Si 0.92 21.38 29.56 -169.99 -5.03 16.35 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.26 5.88 4.57 -6.83 -0.03 5.85 16 20 C 0.26 6.41 10.12 -20.75 -0.21 6.20 16 21 N -0.52 -13.86 18.53 42.17 0.78 -13.08 16 22 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 23 C -0.12 -2.01 9.70 -39.58 -0.38 -2.40 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.12 2.18 4.63 -52.49 -0.24 1.94 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 1.04 5.78 -51.93 -0.30 0.74 16 31 H 0.34 4.66 8.99 -39.29 -0.35 4.31 16 32 H 0.33 3.82 9.08 -39.29 -0.36 3.47 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.12 3.03 6.20 -51.93 -0.32 2.71 16 35 H 0.05 0.91 5.08 -51.93 -0.26 0.64 16 36 H 0.11 1.78 7.95 -52.49 -0.42 1.37 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -30.14 303.50 -7.25 -37.39 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.72 Total: 8.52 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.86 Total: -4.35 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.78 Total: -62.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.14 -7.25 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042906349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.367 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds