Wall clock time and date at job start Mon Mar 30 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.99925 * 2 1 4 4 C 1.38235 * 120.00256 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99811 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47007 * 182.08358 * 6 5 4 8 8 C 1.53001 * 109.47039 * 302.08106 * 6 5 4 9 9 N 1.46896 * 109.47167 * 174.99950 * 8 6 5 10 10 N 1.46499 * 109.47296 * 62.08398 * 6 5 4 11 11 C 1.36938 * 120.00123 * 115.33565 * 10 6 5 12 12 H 1.08002 * 119.99778 * 9.80364 * 11 10 6 13 13 C 1.38809 * 119.99945 * 189.79741 * 11 10 6 14 14 N 1.31623 * 120.00059 * 9.66539 * 13 11 10 15 15 Si 1.86800 * 119.99780 * 189.66206 * 13 11 10 16 16 H 1.48499 * 109.47264 * 90.00644 * 15 13 11 17 17 H 1.48505 * 109.46762 * 210.00335 * 15 13 11 18 18 H 1.48499 * 109.47333 * 330.00047 * 15 13 11 19 19 C 1.46496 * 119.99829 * 295.06511 * 10 6 5 20 20 C 1.47209 * 109.47440 * 94.60521 * 19 10 6 21 21 N 4.39923 * 122.23822 * 51.18456 * 2 1 3 22 22 C 1.38237 * 120.00397 * 0.24889 * 5 4 3 23 23 C 1.38234 * 120.00364 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.46667 * 89.99866 * 1 2 3 25 25 H 1.08998 * 109.46715 * 209.99897 * 1 2 3 26 26 H 1.08998 * 109.47157 * 329.99673 * 1 2 3 27 27 H 1.08004 * 119.99942 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00149 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47143 * 295.00126 * 8 6 5 30 30 H 1.09001 * 109.46507 * 55.00274 * 8 6 5 31 31 H 1.00900 * 110.99941 * 56.04934 * 9 8 6 32 32 H 1.00898 * 111.00286 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99901 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47456 * 214.60521 * 19 10 6 35 35 H 1.09003 * 109.47056 * 334.60570 * 19 10 6 36 36 H 1.08000 * 120.00194 * 179.72890 * 22 5 4 37 37 H 1.08002 * 119.99565 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 1 6.1421 -1.0268 -0.0409 8 6 6.2878 0.7669 -1.2251 9 7 7.7518 0.8701 -1.1636 10 7 6.2681 0.6463 1.2176 11 6 6.9755 -0.0782 2.1395 12 1 7.3096 -1.0770 1.9003 13 6 7.2633 0.4712 3.3813 14 7 6.7005 1.6036 3.7464 15 14 8.4494 -0.3967 4.5343 16 1 9.8306 0.0847 4.2780 17 1 8.0759 -0.1030 5.9413 18 1 8.3843 -1.8617 4.3005 19 6 6.0056 2.0688 1.4489 20 6 4.7913 2.2171 2.2677 21 7 3.8538 2.3324 2.8993 22 6 3.5806 -1.1971 -0.0073 23 6 2.1983 -1.1971 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 5.9987 0.2370 -2.1327 30 1 5.8531 1.7664 -1.2338 31 1 8.1759 -0.0424 -1.0894 32 1 8.1127 1.3724 -1.9607 33 1 6.9014 1.9874 4.6143 34 1 6.8524 2.5144 1.9710 35 1 5.8627 2.5721 0.4926 36 1 4.1207 -2.1324 -0.0126 37 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042906349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:03 Heat of formation + Delta-G solvation = 66.509833 kcal Electronic energy + Delta-G solvation = -19712.775328 eV Core-core repulsion = 16876.327490 eV Total energy + Delta-G solvation = -2836.447837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62668 -38.38120 -36.39530 -35.11008 -33.68529 -32.42276 -31.71604 -29.61595 -28.69109 -26.38021 -24.79824 -23.50433 -22.44511 -20.94123 -19.35403 -17.56306 -17.37677 -17.22804 -16.16729 -16.14872 -15.90449 -15.30625 -15.10326 -14.66721 -14.54876 -14.18107 -14.08416 -13.70434 -13.58357 -13.18388 -13.03017 -12.96249 -12.76038 -12.71832 -12.58981 -12.18670 -12.02556 -11.84251 -11.70843 -11.57967 -11.44196 -10.55513 -9.68118 -9.30580 -9.18276 -8.94318 -7.77192 -5.15948 0.55157 0.61796 1.53594 1.54541 1.61030 2.44180 2.63728 2.78349 2.97863 3.40872 3.79893 3.81914 4.01513 4.10241 4.11806 4.23670 4.32229 4.45258 4.58854 4.60884 4.69484 4.81498 4.84208 4.90769 5.00014 5.10288 5.18054 5.32411 5.36607 5.57494 5.64182 5.69516 5.77735 5.88727 6.25377 6.31634 6.56868 6.94998 7.16306 7.56346 7.87621 8.25383 9.23830 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.007648 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.850621 B = 3660.385332 C = 4084.726426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.132 4.132 4 C -0.112 4.112 5 C -0.103 4.103 6 C 0.208 3.792 7 H 0.074 0.926 8 C 0.065 3.935 9 N -0.840 5.840 10 N -0.564 5.564 11 C -0.226 4.226 12 H 0.085 0.915 13 C -0.059 4.059 14 N -0.941 5.941 15 Si 0.970 3.030 16 H -0.283 1.283 17 H -0.313 1.313 18 H -0.274 1.274 19 C 0.271 3.729 20 C 0.272 3.728 21 N -0.560 5.560 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.344 0.656 33 H 0.243 0.757 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -3.706 -13.866 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.106 4.106 6 C 0.101 3.899 7 H 0.092 0.908 8 C -0.067 4.067 9 N -0.371 5.371 10 N -0.282 5.282 11 C -0.355 4.355 12 H 0.103 0.897 13 C -0.251 4.251 14 N -0.591 5.591 15 Si 0.801 3.199 16 H -0.210 1.210 17 H -0.241 1.241 18 H -0.199 1.199 19 C 0.141 3.859 20 C -0.045 4.045 21 N -0.243 5.243 22 C -0.142 4.142 23 C -0.148 4.148 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.301 -3.093 -12.130 13.594 hybrid contribution 0.913 -0.781 0.319 1.243 sum -4.388 -3.874 -11.811 13.182 Atomic orbital electron populations 1.20762 0.89540 1.02888 1.03059 1.20188 0.97415 0.92947 1.00191 1.21122 0.94324 0.98029 1.01556 1.21097 0.94412 0.97809 0.99740 1.20769 0.97681 0.93337 0.98829 1.19637 0.87041 0.96644 0.86607 0.90758 1.22050 0.89269 1.00001 0.95400 1.58371 1.04534 1.24824 1.49324 1.43934 1.60061 1.04905 1.19309 1.19645 1.24008 0.98767 0.93123 0.89683 1.25394 1.02261 0.98737 0.98708 1.69901 1.46476 1.21863 1.20853 0.85195 0.79256 0.78147 0.77324 1.21010 1.24136 1.19884 1.18475 0.88259 0.86305 0.92841 1.30917 0.92361 0.89830 0.91407 1.80765 1.17384 1.11784 1.14393 1.21234 0.94691 0.97718 1.00520 1.21221 0.94087 0.98108 1.01379 0.89676 0.90886 0.91996 0.86419 0.86991 0.94302 0.91667 0.84551 0.84225 0.94632 0.88173 0.90382 0.85337 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.01 71.24 0.71 -1.68 16 2 C -0.11 -3.24 5.88 -19.86 -0.12 -3.36 16 3 C -0.13 -4.46 9.70 22.27 0.22 -4.24 16 4 C -0.11 -4.03 6.55 22.27 0.15 -3.88 16 5 C -0.10 -3.66 4.87 -19.86 -0.10 -3.76 16 6 C 0.21 7.24 2.66 44.25 0.12 7.36 16 7 H 0.07 2.54 7.53 -2.39 -0.02 2.52 16 8 C 0.07 1.82 5.80 86.30 0.50 2.32 16 9 N -0.84 -22.28 9.35 -186.72 -1.75 -24.03 16 10 N -0.56 -24.41 2.13 -692.68 -1.48 -25.89 16 11 C -0.23 -11.06 9.75 84.03 0.82 -10.24 16 12 H 0.09 3.99 7.69 -2.91 -0.02 3.97 16 13 C -0.06 -3.07 5.25 84.86 0.45 -2.62 16 14 N -0.94 -52.76 8.26 21.65 0.18 -52.59 16 15 Si 0.97 44.19 29.56 68.60 2.03 46.22 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C 0.27 12.01 4.57 84.58 0.39 12.40 16 20 C 0.27 13.55 10.12 89.44 0.90 14.46 16 21 N -0.56 -30.10 18.53 20.01 0.37 -29.73 16 22 C -0.12 -4.00 9.67 22.27 0.22 -3.79 16 23 C -0.13 -3.88 9.70 22.27 0.22 -3.66 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.11 4.06 4.63 -2.91 -0.01 4.04 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.86 5.78 -2.39 -0.01 1.85 16 31 H 0.34 8.67 8.99 -89.69 -0.81 7.87 16 32 H 0.34 7.20 9.08 -89.70 -0.81 6.39 16 33 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.10 5.00 6.20 -2.39 -0.01 4.98 16 35 H 0.08 2.95 5.08 -2.39 -0.01 2.93 16 36 H 0.13 3.71 7.95 -2.91 -0.02 3.68 16 37 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -63.96 303.50 3.31 -60.65 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.51 Total: 26.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.47 Total: -0.70 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -2.67 Total: -132.22 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -63.96 3.31 -60.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042906349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.162 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds