Wall clock time and date at job start Mon Mar 30 2020 05:21:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38262 * 120.00001 * 2 1
4 4 C 1.38212 * 120.00040 * 180.02562 * 3 2 1
5 5 C 1.38265 * 119.99884 * 359.95123 * 4 3 2
6 6 C 1.38210 * 119.99958 * 0.05088 * 5 4 3
7 7 C 1.50703 * 119.99760 * 179.97438 * 6 5 4
8 8 H 1.09006 * 109.46892 * 178.65339 * 7 6 5
9 9 C 1.53003 * 109.46773 * 58.65553 * 7 6 5
10 10 N 1.46903 * 109.46602 * 184.99679 * 9 7 6
11 11 N 1.46495 * 109.47044 * 298.65661 * 7 6 5
12 12 C 1.36938 * 119.99705 * 244.46487 * 11 7 6
13 13 H 1.08000 * 120.00493 * 346.65069 * 12 11 7
14 14 C 1.38815 * 120.00009 * 166.65274 * 12 11 7
15 15 N 1.31622 * 119.99914 * 359.14414 * 14 12 11
16 16 Si 1.86799 * 119.99892 * 179.14328 * 14 12 11
17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12
18 18 H 1.48507 * 109.47068 * 120.00198 * 16 14 12
19 19 H 1.48508 * 109.46868 * 239.99576 * 16 14 12
20 20 C 1.46500 * 120.00304 * 64.46809 * 11 7 6
21 21 C 1.47202 * 109.47122 * 264.45886 * 20 11 7
22 22 N 4.88577 * 143.11570 * 276.35661 * 2 1 3
23 23 C 1.38218 * 120.00156 * 179.97438 * 2 1 3
24 24 H 1.09000 * 109.46635 * 270.01936 * 1 2 3
25 25 H 1.08993 * 109.47003 * 30.02113 * 1 2 3
26 26 H 1.08998 * 109.46715 * 150.02357 * 1 2 3
27 27 H 1.08001 * 119.99893 * 0.02562 * 3 2 1
28 28 H 1.07996 * 119.99937 * 179.97438 * 4 3 2
29 29 H 1.07999 * 119.99525 * 180.32199 * 5 4 3
30 30 H 1.08995 * 109.47033 * 304.99614 * 9 7 6
31 31 H 1.08995 * 109.47315 * 65.00515 * 9 7 6
32 32 H 1.00904 * 110.99737 * 180.02562 * 10 9 7
33 33 H 1.00902 * 111.00502 * 303.95370 * 10 9 7
34 34 H 0.97002 * 120.00086 * 180.02562 * 15 14 12
35 35 H 1.08994 * 109.46880 * 24.46062 * 20 11 7
36 36 H 1.09000 * 109.47249 * 144.46046 * 20 11 7
37 37 H 1.07997 * 119.99950 * 359.97438 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1974 0.0000
4 6 3.5804 1.1974 -0.0005
5 6 4.2717 0.0000 -0.0001
6 6 3.5807 -1.1969 -0.0001
7 6 4.3342 -2.5021 -0.0002
8 1 3.6261 -3.3304 0.0240
9 6 5.2390 -2.5685 1.2319
10 7 6.0611 -3.7844 1.1705
11 7 5.1520 -2.5937 -1.2122
12 6 4.8912 -3.5643 -2.1423
13 1 4.2373 -4.3876 -1.8950
14 6 5.4672 -3.4901 -3.4031
15 7 6.2507 -2.4781 -3.7101
16 14 5.1305 -4.8267 -4.6638
17 1 4.2252 -5.8460 -4.0750
18 1 4.4892 -4.2272 -5.8616
19 1 6.4100 -5.4698 -5.0571
20 6 6.2488 -1.6470 -1.4291
21 6 5.7771 -0.5335 -2.2684
22 7 5.4149 0.3247 -2.9144
23 6 2.1981 -1.1970 0.0005
24 1 -0.3632 0.0003 1.0277
25 1 -0.3633 0.8897 -0.5141
26 1 -0.3633 -0.8902 -0.5135
27 1 1.6583 2.1327 0.0004
28 1 4.1204 2.1327 -0.0010
29 1 5.3517 0.0000 0.0048
30 1 5.8872 -1.6925 1.2543
31 1 4.6256 -2.5899 2.1325
32 1 6.6677 -3.8517 1.9741
33 1 5.4837 -4.6074 1.0838
34 1 6.6529 -2.4260 -4.5913
35 1 6.5894 -1.2595 -0.4691
36 1 7.0735 -2.1549 -1.9292
37 1 1.6582 -2.1323 0.0014
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042965757.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:21:14
Heat of formation + Delta-G solvation = 85.625869 kcal
Electronic energy + Delta-G solvation = -19754.079539 eV
Core-core repulsion = 16918.460635 eV
Total energy + Delta-G solvation = -2835.618904 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.27099 -36.82643 -34.63302 -33.39022 -32.37319 -31.32361 -30.17440 -27.35356
-26.86905 -25.97975 -23.11160 -21.90079 -21.34137 -19.17663 -17.51405 -16.27001
-15.69398 -15.52055 -15.16554 -14.82123 -14.17515 -13.93223 -13.48552 -13.47688
-13.08233 -12.77706 -12.53989 -12.39983 -11.96956 -11.87481 -11.55871 -11.36883
-10.99142 -10.93551 -10.86739 -10.71492 -10.45968 -10.27641 -9.99566 -9.82992
-9.76881 -8.67235 -8.27344 -8.09098 -8.01267 -7.10769 -5.80001 -3.23852
1.88496 1.92723 3.37470 3.42614 3.46174 4.19227 4.37875 4.56010
4.78593 4.98018 5.18547 5.24722 5.39123 5.46504 5.55108 5.59131
5.70308 5.71816 5.76704 5.88221 5.97813 6.02418 6.04657 6.10751
6.24447 6.44874 6.57087 6.63491 6.82241 7.00609 7.03051 7.24286
7.45912 7.54971 7.65727 7.67345 7.94942 8.23968 9.09800 9.51409
9.70859 10.12733 11.21685
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.018013 B = 0.007893 C = 0.007427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.099817 B = 3546.384290 C = 3769.371085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.095 4.095
3 C -0.134 4.134
4 C -0.112 4.112
5 C -0.109 4.109
6 C -0.076 4.076
7 C 0.209 3.791
8 H 0.073 0.927
9 C 0.053 3.947
10 N -0.827 5.827
11 N -0.558 5.558
12 C -0.234 4.234
13 H 0.079 0.921
14 C -0.004 4.004
15 N -0.915 5.915
16 Si 0.917 3.083
17 H -0.280 1.280
18 H -0.293 1.293
19 H -0.289 1.289
20 C 0.264 3.736
21 C 0.260 3.740
22 N -0.524 5.524
23 C -0.115 4.115
24 H 0.063 0.937
25 H 0.060 0.940
26 H 0.062 0.938
27 H 0.110 0.890
28 H 0.112 0.888
29 H 0.119 0.881
30 H 0.068 0.932
31 H 0.017 0.983
32 H 0.328 0.672
33 H 0.338 0.662
34 H 0.257 0.743
35 H 0.045 0.955
36 H 0.126 0.874
37 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.622 0.780 12.159 13.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.095 4.095
3 C -0.152 4.152
4 C -0.130 4.130
5 C -0.128 4.128
6 C -0.080 4.080
7 C 0.100 3.900
8 H 0.091 0.909
9 C -0.079 4.079
10 N -0.355 5.355
11 N -0.276 5.276
12 C -0.363 4.363
13 H 0.097 0.903
14 C -0.200 4.200
15 N -0.563 5.563
16 Si 0.748 3.252
17 H -0.205 1.205
18 H -0.220 1.220
19 H -0.216 1.216
20 C 0.135 3.865
21 C -0.057 4.057
22 N -0.207 5.207
23 C -0.134 4.134
24 H 0.082 0.918
25 H 0.079 0.921
26 H 0.081 0.919
27 H 0.128 0.872
28 H 0.130 0.870
29 H 0.137 0.863
30 H 0.086 0.914
31 H 0.035 0.965
32 H 0.139 0.861
33 H 0.150 0.850
34 H 0.068 0.932
35 H 0.063 0.937
36 H 0.143 0.857
37 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -4.751 2.293 10.351 11.618
hybrid contribution -0.608 -1.130 0.022 1.283
sum -5.358 1.163 10.373 11.733
Atomic orbital electron populations
1.20721 0.91960 1.02313 1.01540 1.19782 0.95436 0.93402 1.00893
1.20819 0.94258 0.96903 1.03259 1.20998 0.94168 0.97806 1.00070
1.21092 0.99900 0.92016 0.99756 1.20745 0.93752 0.96718 0.96759
1.19456 0.91038 0.92147 0.87319 0.90895 1.22259 0.95601 0.93780
0.96286 1.58413 1.25490 1.04319 1.47310 1.43814 1.31853 1.32609
1.19339 1.19373 1.25361 1.00193 0.91330 0.90337 1.24870 0.99872
0.98014 0.97252 1.69701 1.35281 1.30115 1.21156 0.85972 0.77473
0.80481 0.81313 1.20486 1.21990 1.21597 1.18509 0.92160 0.84138
0.91692 1.30214 0.91872 0.91371 0.92268 1.80673 1.10200 1.16406
1.13406 1.20832 0.93729 0.96974 1.01830 0.91799 0.92113 0.91864
0.87172 0.87040 0.86303 0.91375 0.96514 0.86079 0.84989 0.93188
0.93698 0.85651 0.86781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16
2 C -0.10 -1.53 5.88 -104.62 -0.62 -2.14 16
3 C -0.13 -2.18 9.70 -39.58 -0.38 -2.56 16
4 C -0.11 -1.95 10.05 -39.58 -0.40 -2.35 16
5 C -0.11 -2.01 6.57 -39.58 -0.26 -2.27 16
6 C -0.08 -1.41 4.88 -104.62 -0.51 -1.92 16
7 C 0.21 3.82 2.66 -69.08 -0.18 3.63 16
8 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16
9 C 0.05 0.81 5.82 -3.82 -0.02 0.78 16
10 N -0.83 -11.89 9.35 -10.37 -0.10 -11.99 16
11 N -0.56 -12.33 2.13 -170.29 -0.36 -12.69 16
12 C -0.23 -5.82 9.74 -15.06 -0.15 -5.96 16
13 H 0.08 1.90 7.69 -52.49 -0.40 1.50 16
14 C 0.00 -0.11 5.35 -17.43 -0.09 -0.20 16
15 N -0.92 -25.18 8.06 55.49 0.45 -24.73 16
16 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16
17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
20 C 0.26 5.89 4.56 -6.83 -0.03 5.86 16
21 C 0.26 6.47 10.10 -20.84 -0.21 6.26 16
22 N -0.52 -13.99 18.52 42.06 0.78 -13.21 16
23 C -0.11 -1.99 9.33 -39.58 -0.37 -2.36 16
24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16
26 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16
27 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16
28 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16
29 H 0.12 2.19 4.59 -52.49 -0.24 1.95 16
30 H 0.07 1.04 5.83 -51.93 -0.30 0.74 16
31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16
32 H 0.33 3.83 9.08 -39.29 -0.36 3.48 16
33 H 0.34 4.66 8.99 -39.29 -0.35 4.31 16
34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
35 H 0.05 0.87 5.00 -51.93 -0.26 0.61 16
36 H 0.13 3.10 6.24 -51.93 -0.32 2.78 16
37 H 0.11 1.80 7.95 -52.49 -0.42 1.38 16
LS Contribution 303.38 15.07 4.57 4.57
Total: -1.00 -30.09 303.38 -7.26 -37.36
By element:
Atomic # 1 Polarization: 13.17 SS G_CDS: -4.72 Total: 8.45 kcal
Atomic # 6 Polarization: -1.37 SS G_CDS: -2.86 Total: -4.23 kcal
Atomic # 7 Polarization: -63.39 SS G_CDS: 0.77 Total: -62.62 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -30.09 -7.26 -37.36 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042965757.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.984 kcal
(2) G-P(sol) polarization free energy of solvation -30.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) 85.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds