Wall clock time and date at job start Mon Mar 30 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 120.00001 * 2 1 4 4 C 1.38212 * 120.00040 * 180.02562 * 3 2 1 5 5 C 1.38265 * 119.99884 * 359.95123 * 4 3 2 6 6 C 1.38210 * 119.99958 * 0.05088 * 5 4 3 7 7 C 1.50703 * 119.99760 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46892 * 178.65339 * 7 6 5 9 9 C 1.53003 * 109.46773 * 58.65553 * 7 6 5 10 10 N 1.46903 * 109.46602 * 184.99679 * 9 7 6 11 11 N 1.46495 * 109.47044 * 298.65661 * 7 6 5 12 12 C 1.36938 * 119.99705 * 244.46487 * 11 7 6 13 13 H 1.08000 * 120.00493 * 346.65069 * 12 11 7 14 14 C 1.38815 * 120.00009 * 166.65274 * 12 11 7 15 15 N 1.31622 * 119.99914 * 359.14414 * 14 12 11 16 16 Si 1.86799 * 119.99892 * 179.14328 * 14 12 11 17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47068 * 120.00198 * 16 14 12 19 19 H 1.48508 * 109.46868 * 239.99576 * 16 14 12 20 20 C 1.46500 * 120.00304 * 64.46809 * 11 7 6 21 21 C 1.47202 * 109.47122 * 264.45886 * 20 11 7 22 22 N 4.88577 * 143.11570 * 276.35661 * 2 1 3 23 23 C 1.38218 * 120.00156 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46635 * 270.01936 * 1 2 3 25 25 H 1.08993 * 109.47003 * 30.02113 * 1 2 3 26 26 H 1.08998 * 109.46715 * 150.02357 * 1 2 3 27 27 H 1.08001 * 119.99893 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.99937 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.99525 * 180.32199 * 5 4 3 30 30 H 1.08995 * 109.47033 * 304.99614 * 9 7 6 31 31 H 1.08995 * 109.47315 * 65.00515 * 9 7 6 32 32 H 1.00904 * 110.99737 * 180.02562 * 10 9 7 33 33 H 1.00902 * 111.00502 * 303.95370 * 10 9 7 34 34 H 0.97002 * 120.00086 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.46880 * 24.46062 * 20 11 7 36 36 H 1.09000 * 109.47249 * 144.46046 * 20 11 7 37 37 H 1.07997 * 119.99950 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1969 -0.0001 7 6 4.3342 -2.5021 -0.0002 8 1 3.6261 -3.3304 0.0240 9 6 5.2390 -2.5685 1.2319 10 7 6.0611 -3.7844 1.1705 11 7 5.1520 -2.5937 -1.2122 12 6 4.8912 -3.5643 -2.1423 13 1 4.2373 -4.3876 -1.8950 14 6 5.4672 -3.4901 -3.4031 15 7 6.2507 -2.4781 -3.7101 16 14 5.1305 -4.8267 -4.6638 17 1 4.2252 -5.8460 -4.0750 18 1 4.4892 -4.2272 -5.8616 19 1 6.4100 -5.4698 -5.0571 20 6 6.2488 -1.6470 -1.4291 21 6 5.7771 -0.5335 -2.2684 22 7 5.4149 0.3247 -2.9144 23 6 2.1981 -1.1970 0.0005 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6583 2.1327 0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 0.0000 0.0048 30 1 5.8872 -1.6925 1.2543 31 1 4.6256 -2.5899 2.1325 32 1 6.6677 -3.8517 1.9741 33 1 5.4837 -4.6074 1.0838 34 1 6.6529 -2.4260 -4.5913 35 1 6.5894 -1.2595 -0.4691 36 1 7.0735 -2.1549 -1.9292 37 1 1.6582 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042965757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:14 Heat of formation + Delta-G solvation = 85.625869 kcal Electronic energy + Delta-G solvation = -19754.079539 eV Core-core repulsion = 16918.460635 eV Total energy + Delta-G solvation = -2835.618904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.27099 -36.82643 -34.63302 -33.39022 -32.37319 -31.32361 -30.17440 -27.35356 -26.86905 -25.97975 -23.11160 -21.90079 -21.34137 -19.17663 -17.51405 -16.27001 -15.69398 -15.52055 -15.16554 -14.82123 -14.17515 -13.93223 -13.48552 -13.47688 -13.08233 -12.77706 -12.53989 -12.39983 -11.96956 -11.87481 -11.55871 -11.36883 -10.99142 -10.93551 -10.86739 -10.71492 -10.45968 -10.27641 -9.99566 -9.82992 -9.76881 -8.67235 -8.27344 -8.09098 -8.01267 -7.10769 -5.80001 -3.23852 1.88496 1.92723 3.37470 3.42614 3.46174 4.19227 4.37875 4.56010 4.78593 4.98018 5.18547 5.24722 5.39123 5.46504 5.55108 5.59131 5.70308 5.71816 5.76704 5.88221 5.97813 6.02418 6.04657 6.10751 6.24447 6.44874 6.57087 6.63491 6.82241 7.00609 7.03051 7.24286 7.45912 7.54971 7.65727 7.67345 7.94942 8.23968 9.09800 9.51409 9.70859 10.12733 11.21685 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.007893 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.099817 B = 3546.384290 C = 3769.371085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.076 4.076 7 C 0.209 3.791 8 H 0.073 0.927 9 C 0.053 3.947 10 N -0.827 5.827 11 N -0.558 5.558 12 C -0.234 4.234 13 H 0.079 0.921 14 C -0.004 4.004 15 N -0.915 5.915 16 Si 0.917 3.083 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.289 1.289 20 C 0.264 3.736 21 C 0.260 3.740 22 N -0.524 5.524 23 C -0.115 4.115 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.328 0.672 33 H 0.338 0.662 34 H 0.257 0.743 35 H 0.045 0.955 36 H 0.126 0.874 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 0.780 12.159 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.080 4.080 7 C 0.100 3.900 8 H 0.091 0.909 9 C -0.079 4.079 10 N -0.355 5.355 11 N -0.276 5.276 12 C -0.363 4.363 13 H 0.097 0.903 14 C -0.200 4.200 15 N -0.563 5.563 16 Si 0.748 3.252 17 H -0.205 1.205 18 H -0.220 1.220 19 H -0.216 1.216 20 C 0.135 3.865 21 C -0.057 4.057 22 N -0.207 5.207 23 C -0.134 4.134 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.143 0.857 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.751 2.293 10.351 11.618 hybrid contribution -0.608 -1.130 0.022 1.283 sum -5.358 1.163 10.373 11.733 Atomic orbital electron populations 1.20721 0.91960 1.02313 1.01540 1.19782 0.95436 0.93402 1.00893 1.20819 0.94258 0.96903 1.03259 1.20998 0.94168 0.97806 1.00070 1.21092 0.99900 0.92016 0.99756 1.20745 0.93752 0.96718 0.96759 1.19456 0.91038 0.92147 0.87319 0.90895 1.22259 0.95601 0.93780 0.96286 1.58413 1.25490 1.04319 1.47310 1.43814 1.31853 1.32609 1.19339 1.19373 1.25361 1.00193 0.91330 0.90337 1.24870 0.99872 0.98014 0.97252 1.69701 1.35281 1.30115 1.21156 0.85972 0.77473 0.80481 0.81313 1.20486 1.21990 1.21597 1.18509 0.92160 0.84138 0.91692 1.30214 0.91872 0.91371 0.92268 1.80673 1.10200 1.16406 1.13406 1.20832 0.93729 0.96974 1.01830 0.91799 0.92113 0.91864 0.87172 0.87040 0.86303 0.91375 0.96514 0.86079 0.84989 0.93188 0.93698 0.85651 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 2 C -0.10 -1.53 5.88 -104.62 -0.62 -2.14 16 3 C -0.13 -2.18 9.70 -39.58 -0.38 -2.56 16 4 C -0.11 -1.95 10.05 -39.58 -0.40 -2.35 16 5 C -0.11 -2.01 6.57 -39.58 -0.26 -2.27 16 6 C -0.08 -1.41 4.88 -104.62 -0.51 -1.92 16 7 C 0.21 3.82 2.66 -69.08 -0.18 3.63 16 8 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 9 C 0.05 0.81 5.82 -3.82 -0.02 0.78 16 10 N -0.83 -11.89 9.35 -10.37 -0.10 -11.99 16 11 N -0.56 -12.33 2.13 -170.29 -0.36 -12.69 16 12 C -0.23 -5.82 9.74 -15.06 -0.15 -5.96 16 13 H 0.08 1.90 7.69 -52.49 -0.40 1.50 16 14 C 0.00 -0.11 5.35 -17.43 -0.09 -0.20 16 15 N -0.92 -25.18 8.06 55.49 0.45 -24.73 16 16 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.26 5.89 4.56 -6.83 -0.03 5.86 16 21 C 0.26 6.47 10.10 -20.84 -0.21 6.26 16 22 N -0.52 -13.99 18.52 42.06 0.78 -13.21 16 23 C -0.11 -1.99 9.33 -39.58 -0.37 -2.36 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.12 2.19 4.59 -52.49 -0.24 1.95 16 30 H 0.07 1.04 5.83 -51.93 -0.30 0.74 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.33 3.83 9.08 -39.29 -0.36 3.48 16 33 H 0.34 4.66 8.99 -39.29 -0.35 4.31 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 0.87 5.00 -51.93 -0.26 0.61 16 36 H 0.13 3.10 6.24 -51.93 -0.32 2.78 16 37 H 0.11 1.80 7.95 -52.49 -0.42 1.38 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -30.09 303.38 -7.26 -37.36 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.72 Total: 8.45 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.86 Total: -4.23 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.77 Total: -62.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.09 -7.26 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042965757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.984 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds