Wall clock time and date at job start Mon Mar 30 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 120.00001 * 2 1 4 4 C 1.38212 * 120.00040 * 180.02562 * 3 2 1 5 5 C 1.38265 * 119.99884 * 359.95123 * 4 3 2 6 6 C 1.38210 * 119.99958 * 0.05088 * 5 4 3 7 7 C 1.50703 * 119.99760 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46892 * 178.65339 * 7 6 5 9 9 C 1.53003 * 109.46773 * 58.65553 * 7 6 5 10 10 N 1.46903 * 109.46602 * 184.99679 * 9 7 6 11 11 N 1.46495 * 109.47044 * 298.65661 * 7 6 5 12 12 C 1.36938 * 119.99705 * 244.46487 * 11 7 6 13 13 H 1.08000 * 120.00493 * 346.65069 * 12 11 7 14 14 C 1.38815 * 120.00009 * 166.65274 * 12 11 7 15 15 N 1.31622 * 119.99914 * 359.14414 * 14 12 11 16 16 Si 1.86799 * 119.99892 * 179.14328 * 14 12 11 17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47068 * 120.00198 * 16 14 12 19 19 H 1.48508 * 109.46868 * 239.99576 * 16 14 12 20 20 C 1.46500 * 120.00304 * 64.46809 * 11 7 6 21 21 C 1.47202 * 109.47122 * 264.45886 * 20 11 7 22 22 N 4.88577 * 143.11570 * 276.35661 * 2 1 3 23 23 C 1.38218 * 120.00156 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46635 * 270.01936 * 1 2 3 25 25 H 1.08993 * 109.47003 * 30.02113 * 1 2 3 26 26 H 1.08998 * 109.46715 * 150.02357 * 1 2 3 27 27 H 1.08001 * 119.99893 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.99937 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.99525 * 180.32199 * 5 4 3 30 30 H 1.08995 * 109.47033 * 304.99614 * 9 7 6 31 31 H 1.08995 * 109.47315 * 65.00515 * 9 7 6 32 32 H 1.00904 * 110.99737 * 180.02562 * 10 9 7 33 33 H 1.00902 * 111.00502 * 303.95370 * 10 9 7 34 34 H 0.97002 * 120.00086 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.46880 * 24.46062 * 20 11 7 36 36 H 1.09000 * 109.47249 * 144.46046 * 20 11 7 37 37 H 1.07997 * 119.99950 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1969 -0.0001 7 6 4.3342 -2.5021 -0.0002 8 1 3.6261 -3.3304 0.0240 9 6 5.2390 -2.5685 1.2319 10 7 6.0611 -3.7844 1.1705 11 7 5.1520 -2.5937 -1.2122 12 6 4.8912 -3.5643 -2.1423 13 1 4.2373 -4.3876 -1.8950 14 6 5.4672 -3.4901 -3.4031 15 7 6.2507 -2.4781 -3.7101 16 14 5.1305 -4.8267 -4.6638 17 1 4.2252 -5.8460 -4.0750 18 1 4.4892 -4.2272 -5.8616 19 1 6.4100 -5.4698 -5.0571 20 6 6.2488 -1.6470 -1.4291 21 6 5.7771 -0.5335 -2.2684 22 7 5.4149 0.3247 -2.9144 23 6 2.1981 -1.1970 0.0005 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6583 2.1327 0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 0.0000 0.0048 30 1 5.8872 -1.6925 1.2543 31 1 4.6256 -2.5899 2.1325 32 1 6.6677 -3.8517 1.9741 33 1 5.4837 -4.6074 1.0838 34 1 6.6529 -2.4260 -4.5913 35 1 6.5894 -1.2595 -0.4691 36 1 7.0735 -2.1549 -1.9292 37 1 1.6582 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042965757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:14 Heat of formation + Delta-G solvation = 67.218009 kcal Electronic energy + Delta-G solvation = -19754.877764 eV Core-core repulsion = 16918.460635 eV Total energy + Delta-G solvation = -2836.417128 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63720 -38.37331 -36.42164 -35.09723 -33.60106 -32.76159 -31.80450 -29.09407 -28.17646 -27.35433 -24.75694 -23.25141 -22.69695 -20.58857 -19.36630 -17.66061 -17.40248 -17.21278 -16.44520 -16.14944 -15.85451 -15.31063 -15.02709 -14.64913 -14.56913 -14.11954 -13.97066 -13.75832 -13.52324 -13.20502 -13.00515 -12.99646 -12.80969 -12.73469 -12.59840 -12.20005 -11.99551 -11.87694 -11.68995 -11.59296 -11.46050 -10.59267 -9.60233 -9.35584 -9.19829 -8.92813 -7.77008 -5.19286 0.57126 0.59601 1.49999 1.52581 1.60164 2.44221 2.63500 2.80587 2.97875 3.41577 3.77481 3.80616 4.04286 4.09574 4.13965 4.28730 4.36577 4.43586 4.54507 4.63105 4.66123 4.77954 4.86181 4.93103 5.04081 5.09425 5.20215 5.29723 5.38682 5.59748 5.68153 5.69526 5.75863 5.88163 6.25389 6.32456 6.56554 6.94687 7.16250 7.57355 7.86504 8.24532 9.22014 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.007893 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.099817 B = 3546.384290 C = 3769.371085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.092 4.092 7 C 0.207 3.793 8 H 0.074 0.926 9 C 0.065 3.935 10 N -0.840 5.840 11 N -0.565 5.565 12 C -0.222 4.222 13 H 0.087 0.913 14 C -0.059 4.059 15 N -0.940 5.940 16 Si 0.967 3.033 17 H -0.263 1.263 18 H -0.314 1.314 19 H -0.293 1.293 20 C 0.271 3.729 21 C 0.274 3.726 22 N -0.563 5.563 23 C -0.129 4.129 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.345 0.655 33 H 0.341 0.659 34 H 0.243 0.757 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 0.433 13.840 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.157 4.157 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.095 4.095 7 C 0.100 3.900 8 H 0.092 0.908 9 C -0.067 4.067 10 N -0.370 5.370 11 N -0.283 5.283 12 C -0.352 4.352 13 H 0.104 0.896 14 C -0.251 4.251 15 N -0.590 5.590 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.242 1.242 19 H -0.220 1.220 20 C 0.142 3.858 21 C -0.043 4.043 22 N -0.247 5.247 23 C -0.148 4.148 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.186 1.923 12.096 13.721 hybrid contribution -0.247 -1.001 -0.386 1.100 sum -6.433 0.923 11.710 13.392 Atomic orbital electron populations 1.20775 0.89305 1.03040 1.03168 1.20222 0.97486 0.92827 0.99327 1.21178 0.94014 0.98222 1.02318 1.21249 0.95072 0.97962 1.00145 1.21117 0.99730 0.92618 1.00795 1.20771 0.94428 0.96508 0.97764 1.19649 0.91255 0.92301 0.86773 0.90767 1.22051 0.95292 0.94038 0.95346 1.58372 1.25830 1.04198 1.48632 1.43903 1.32621 1.31889 1.19882 1.19688 1.23547 1.00573 0.91369 0.89572 1.25446 1.00953 0.99737 0.99002 1.69883 1.36957 1.31679 1.20450 0.85158 0.77065 0.79029 0.78909 1.18732 1.24241 1.22045 1.18457 0.91594 0.83400 0.92381 1.30770 0.90851 0.91035 0.91654 1.80650 1.11599 1.17758 1.14684 1.21109 0.93552 0.98195 1.01958 0.89614 0.91063 0.91492 0.84747 0.86092 0.86937 0.91633 0.94322 0.84214 0.84576 0.94694 0.90569 0.87943 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.24 0.71 -1.60 16 2 C -0.10 -2.93 5.88 -19.86 -0.12 -3.05 16 3 C -0.14 -4.23 9.70 22.27 0.22 -4.01 16 4 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 5 C -0.12 -4.46 6.57 22.27 0.15 -4.31 16 6 C -0.09 -3.25 4.88 -19.87 -0.10 -3.35 16 7 C 0.21 7.22 2.66 44.25 0.12 7.34 16 8 H 0.07 2.54 7.54 -2.38 -0.02 2.52 16 9 C 0.07 1.82 5.82 86.30 0.50 2.32 16 10 N -0.84 -22.28 9.35 -186.72 -1.75 -24.03 16 11 N -0.56 -24.42 2.13 -692.69 -1.48 -25.90 16 12 C -0.22 -10.85 9.74 84.03 0.82 -10.03 16 13 H 0.09 4.02 7.69 -2.91 -0.02 4.00 16 14 C -0.06 -3.10 5.35 84.86 0.45 -2.65 16 15 N -0.94 -52.58 8.06 21.65 0.17 -52.41 16 16 Si 0.97 44.43 29.55 68.60 2.03 46.45 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 C 0.27 12.04 4.56 84.57 0.39 12.42 16 21 C 0.27 13.68 10.10 89.47 0.90 14.58 16 22 N -0.56 -30.37 18.52 19.98 0.37 -30.00 16 23 C -0.13 -4.23 9.33 22.27 0.21 -4.03 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 26 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 27 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 29 H 0.11 4.07 4.59 -2.91 -0.01 4.06 16 30 H 0.07 1.87 5.83 -2.39 -0.01 1.86 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.34 7.21 9.08 -89.69 -0.81 6.39 16 33 H 0.34 8.66 8.99 -89.69 -0.81 7.86 16 34 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.08 2.88 5.00 -2.39 -0.01 2.87 16 36 H 0.10 5.12 6.24 -2.39 -0.01 5.11 16 37 H 0.13 3.70 7.95 -2.91 -0.02 3.68 16 Total: -1.00 -63.89 303.38 3.31 -60.58 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.51 Total: 25.67 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.48 Total: -0.37 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -2.68 Total: -132.33 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.89 3.31 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042965757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.798 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds