Wall clock time and date at job start Mon Mar 30 2020 05:21:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38262 * 120.00001 * 2 1
4 4 C 1.38212 * 120.00040 * 180.02562 * 3 2 1
5 5 C 1.38265 * 119.99884 * 359.95123 * 4 3 2
6 6 C 1.38210 * 119.99958 * 0.05088 * 5 4 3
7 7 C 1.50703 * 119.99760 * 179.97438 * 6 5 4
8 8 H 1.09006 * 109.46892 * 178.65339 * 7 6 5
9 9 C 1.53003 * 109.46773 * 58.65553 * 7 6 5
10 10 N 1.46903 * 109.46602 * 184.99679 * 9 7 6
11 11 N 1.46495 * 109.47044 * 298.65661 * 7 6 5
12 12 C 1.36938 * 119.99705 * 244.46487 * 11 7 6
13 13 H 1.08000 * 120.00493 * 346.65069 * 12 11 7
14 14 C 1.38815 * 120.00009 * 166.65274 * 12 11 7
15 15 N 1.31622 * 119.99914 * 359.14414 * 14 12 11
16 16 Si 1.86799 * 119.99892 * 179.14328 * 14 12 11
17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12
18 18 H 1.48507 * 109.47068 * 120.00198 * 16 14 12
19 19 H 1.48508 * 109.46868 * 239.99576 * 16 14 12
20 20 C 1.46500 * 120.00304 * 64.46809 * 11 7 6
21 21 C 1.47202 * 109.47122 * 264.45886 * 20 11 7
22 22 N 4.88577 * 143.11570 * 276.35661 * 2 1 3
23 23 C 1.38218 * 120.00156 * 179.97438 * 2 1 3
24 24 H 1.09000 * 109.46635 * 270.01936 * 1 2 3
25 25 H 1.08993 * 109.47003 * 30.02113 * 1 2 3
26 26 H 1.08998 * 109.46715 * 150.02357 * 1 2 3
27 27 H 1.08001 * 119.99893 * 0.02562 * 3 2 1
28 28 H 1.07996 * 119.99937 * 179.97438 * 4 3 2
29 29 H 1.07999 * 119.99525 * 180.32199 * 5 4 3
30 30 H 1.08995 * 109.47033 * 304.99614 * 9 7 6
31 31 H 1.08995 * 109.47315 * 65.00515 * 9 7 6
32 32 H 1.00904 * 110.99737 * 180.02562 * 10 9 7
33 33 H 1.00902 * 111.00502 * 303.95370 * 10 9 7
34 34 H 0.97002 * 120.00086 * 180.02562 * 15 14 12
35 35 H 1.08994 * 109.46880 * 24.46062 * 20 11 7
36 36 H 1.09000 * 109.47249 * 144.46046 * 20 11 7
37 37 H 1.07997 * 119.99950 * 359.97438 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1974 0.0000
4 6 3.5804 1.1974 -0.0005
5 6 4.2717 0.0000 -0.0001
6 6 3.5807 -1.1969 -0.0001
7 6 4.3342 -2.5021 -0.0002
8 1 3.6261 -3.3304 0.0240
9 6 5.2390 -2.5685 1.2319
10 7 6.0611 -3.7844 1.1705
11 7 5.1520 -2.5937 -1.2122
12 6 4.8912 -3.5643 -2.1423
13 1 4.2373 -4.3876 -1.8950
14 6 5.4672 -3.4901 -3.4031
15 7 6.2507 -2.4781 -3.7101
16 14 5.1305 -4.8267 -4.6638
17 1 4.2252 -5.8460 -4.0750
18 1 4.4892 -4.2272 -5.8616
19 1 6.4100 -5.4698 -5.0571
20 6 6.2488 -1.6470 -1.4291
21 6 5.7771 -0.5335 -2.2684
22 7 5.4149 0.3247 -2.9144
23 6 2.1981 -1.1970 0.0005
24 1 -0.3632 0.0003 1.0277
25 1 -0.3633 0.8897 -0.5141
26 1 -0.3633 -0.8902 -0.5135
27 1 1.6583 2.1327 0.0004
28 1 4.1204 2.1327 -0.0010
29 1 5.3517 0.0000 0.0048
30 1 5.8872 -1.6925 1.2543
31 1 4.6256 -2.5899 2.1325
32 1 6.6677 -3.8517 1.9741
33 1 5.4837 -4.6074 1.0838
34 1 6.6529 -2.4260 -4.5913
35 1 6.5894 -1.2595 -0.4691
36 1 7.0735 -2.1549 -1.9292
37 1 1.6582 -2.1323 0.0014
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042965757.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:21:14
Heat of formation + Delta-G solvation = 67.218009 kcal
Electronic energy + Delta-G solvation = -19754.877764 eV
Core-core repulsion = 16918.460635 eV
Total energy + Delta-G solvation = -2836.417128 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.63720 -38.37331 -36.42164 -35.09723 -33.60106 -32.76159 -31.80450 -29.09407
-28.17646 -27.35433 -24.75694 -23.25141 -22.69695 -20.58857 -19.36630 -17.66061
-17.40248 -17.21278 -16.44520 -16.14944 -15.85451 -15.31063 -15.02709 -14.64913
-14.56913 -14.11954 -13.97066 -13.75832 -13.52324 -13.20502 -13.00515 -12.99646
-12.80969 -12.73469 -12.59840 -12.20005 -11.99551 -11.87694 -11.68995 -11.59296
-11.46050 -10.59267 -9.60233 -9.35584 -9.19829 -8.92813 -7.77008 -5.19286
0.57126 0.59601 1.49999 1.52581 1.60164 2.44221 2.63500 2.80587
2.97875 3.41577 3.77481 3.80616 4.04286 4.09574 4.13965 4.28730
4.36577 4.43586 4.54507 4.63105 4.66123 4.77954 4.86181 4.93103
5.04081 5.09425 5.20215 5.29723 5.38682 5.59748 5.68153 5.69526
5.75863 5.88163 6.25389 6.32456 6.56554 6.94687 7.16250 7.57355
7.86504 8.24532 9.22014
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.018013 B = 0.007893 C = 0.007427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.099817 B = 3546.384290 C = 3769.371085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.099 4.099
3 C -0.139 4.139
4 C -0.126 4.126
5 C -0.124 4.124
6 C -0.092 4.092
7 C 0.207 3.793
8 H 0.074 0.926
9 C 0.065 3.935
10 N -0.840 5.840
11 N -0.565 5.565
12 C -0.222 4.222
13 H 0.087 0.913
14 C -0.059 4.059
15 N -0.940 5.940
16 Si 0.967 3.033
17 H -0.263 1.263
18 H -0.314 1.314
19 H -0.293 1.293
20 C 0.271 3.729
21 C 0.274 3.726
22 N -0.563 5.563
23 C -0.129 4.129
24 H 0.085 0.915
25 H 0.070 0.930
26 H 0.066 0.934
27 H 0.135 0.865
28 H 0.121 0.879
29 H 0.113 0.887
30 H 0.065 0.935
31 H 0.039 0.961
32 H 0.345 0.655
33 H 0.341 0.659
34 H 0.243 0.757
35 H 0.077 0.923
36 H 0.103 0.897
37 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.036 0.433 13.840 15.105
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.099 4.099
3 C -0.157 4.157
4 C -0.144 4.144
5 C -0.143 4.143
6 C -0.095 4.095
7 C 0.100 3.900
8 H 0.092 0.908
9 C -0.067 4.067
10 N -0.370 5.370
11 N -0.283 5.283
12 C -0.352 4.352
13 H 0.104 0.896
14 C -0.251 4.251
15 N -0.590 5.590
16 Si 0.798 3.202
17 H -0.187 1.187
18 H -0.242 1.242
19 H -0.220 1.220
20 C 0.142 3.858
21 C -0.043 4.043
22 N -0.247 5.247
23 C -0.148 4.148
24 H 0.104 0.896
25 H 0.089 0.911
26 H 0.085 0.915
27 H 0.153 0.847
28 H 0.139 0.861
29 H 0.131 0.869
30 H 0.084 0.916
31 H 0.057 0.943
32 H 0.158 0.842
33 H 0.154 0.846
34 H 0.053 0.947
35 H 0.094 0.906
36 H 0.121 0.879
37 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -6.186 1.923 12.096 13.721
hybrid contribution -0.247 -1.001 -0.386 1.100
sum -6.433 0.923 11.710 13.392
Atomic orbital electron populations
1.20775 0.89305 1.03040 1.03168 1.20222 0.97486 0.92827 0.99327
1.21178 0.94014 0.98222 1.02318 1.21249 0.95072 0.97962 1.00145
1.21117 0.99730 0.92618 1.00795 1.20771 0.94428 0.96508 0.97764
1.19649 0.91255 0.92301 0.86773 0.90767 1.22051 0.95292 0.94038
0.95346 1.58372 1.25830 1.04198 1.48632 1.43903 1.32621 1.31889
1.19882 1.19688 1.23547 1.00573 0.91369 0.89572 1.25446 1.00953
0.99737 0.99002 1.69883 1.36957 1.31679 1.20450 0.85158 0.77065
0.79029 0.78909 1.18732 1.24241 1.22045 1.18457 0.91594 0.83400
0.92381 1.30770 0.90851 0.91035 0.91654 1.80650 1.11599 1.17758
1.14684 1.21109 0.93552 0.98195 1.01958 0.89614 0.91063 0.91492
0.84747 0.86092 0.86937 0.91633 0.94322 0.84214 0.84576 0.94694
0.90569 0.87943 0.85581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.31 10.01 71.24 0.71 -1.60 16
2 C -0.10 -2.93 5.88 -19.86 -0.12 -3.05 16
3 C -0.14 -4.23 9.70 22.27 0.22 -4.01 16
4 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16
5 C -0.12 -4.46 6.57 22.27 0.15 -4.31 16
6 C -0.09 -3.25 4.88 -19.87 -0.10 -3.35 16
7 C 0.21 7.22 2.66 44.25 0.12 7.34 16
8 H 0.07 2.54 7.54 -2.38 -0.02 2.52 16
9 C 0.07 1.82 5.82 86.30 0.50 2.32 16
10 N -0.84 -22.28 9.35 -186.72 -1.75 -24.03 16
11 N -0.56 -24.42 2.13 -692.69 -1.48 -25.90 16
12 C -0.22 -10.85 9.74 84.03 0.82 -10.03 16
13 H 0.09 4.02 7.69 -2.91 -0.02 4.00 16
14 C -0.06 -3.10 5.35 84.86 0.45 -2.65 16
15 N -0.94 -52.58 8.06 21.65 0.17 -52.41 16
16 Si 0.97 44.43 29.55 68.60 2.03 46.45 16
17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16
18 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16
19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16
20 C 0.27 12.04 4.56 84.57 0.39 12.42 16
21 C 0.27 13.68 10.10 89.47 0.90 14.58 16
22 N -0.56 -30.37 18.52 19.98 0.37 -30.00 16
23 C -0.13 -4.23 9.33 22.27 0.21 -4.03 16
24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
25 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16
26 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16
27 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16
28 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16
29 H 0.11 4.07 4.59 -2.91 -0.01 4.06 16
30 H 0.07 1.87 5.83 -2.39 -0.01 1.86 16
31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.34 7.21 9.08 -89.69 -0.81 6.39 16
33 H 0.34 8.66 8.99 -89.69 -0.81 7.86 16
34 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16
35 H 0.08 2.88 5.00 -2.39 -0.01 2.87 16
36 H 0.10 5.12 6.24 -2.39 -0.01 5.11 16
37 H 0.13 3.70 7.95 -2.91 -0.02 3.68 16
Total: -1.00 -63.89 303.38 3.31 -60.58
By element:
Atomic # 1 Polarization: 26.19 SS G_CDS: -0.51 Total: 25.67 kcal
Atomic # 6 Polarization: -4.85 SS G_CDS: 4.48 Total: -0.37 kcal
Atomic # 7 Polarization: -129.66 SS G_CDS: -2.68 Total: -132.33 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal
Total: -63.89 3.31 -60.58 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042965757.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.798 kcal
(2) G-P(sol) polarization free energy of solvation -63.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds