Wall clock time and date at job start Mon Mar 30 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00578 * 2 1 4 4 C 1.53002 * 109.46902 * 66.04179 * 3 2 1 5 5 C 1.53000 * 109.47277 * 180.02562 * 4 3 2 6 6 S 1.80993 * 109.47133 * 180.02562 * 5 4 3 7 7 C 1.76205 * 99.99990 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99746 * 359.97438 * 7 6 5 9 9 C 1.38793 * 120.00116 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00143 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46854 * 90.00137 * 11 9 7 13 13 H 1.48500 * 109.47253 * 209.99903 * 11 9 7 14 14 H 1.48493 * 109.47255 * 330.00126 * 11 9 7 15 15 C 1.46904 * 110.99915 * 236.04573 * 2 1 3 16 16 C 1.53000 * 109.47326 * 199.80053 * 15 2 1 17 17 H 1.09007 * 109.82080 * 301.61492 * 16 15 2 18 18 C 1.54376 * 109.83284 * 180.73105 * 16 15 2 19 19 C 1.55452 * 102.18544 * 219.18100 * 18 16 15 20 20 C 1.54945 * 100.99001 * 34.03781 * 19 18 16 21 21 O 1.43236 * 109.82903 * 62.49895 * 16 15 2 22 22 H 1.09002 * 109.47030 * 54.75068 * 1 2 3 23 23 H 1.09000 * 109.47605 * 174.74968 * 1 2 3 24 24 H 1.08994 * 109.46935 * 294.75684 * 1 2 3 25 25 H 1.09000 * 109.46889 * 306.04845 * 3 2 1 26 26 H 1.08992 * 109.47286 * 186.04504 * 3 2 1 27 27 H 1.09004 * 109.46611 * 60.00154 * 4 3 2 28 28 H 1.08996 * 109.47235 * 300.00730 * 4 3 2 29 29 H 1.09000 * 109.46820 * 300.00637 * 5 4 3 30 30 H 1.08999 * 109.46749 * 59.99949 * 5 4 3 31 31 H 0.96998 * 120.00458 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47215 * 319.79846 * 15 2 1 33 33 H 1.09001 * 109.47253 * 79.79839 * 15 2 1 34 34 H 1.09004 * 110.84819 * 337.31644 * 18 16 15 35 35 H 1.09003 * 110.85259 * 100.93663 * 18 16 15 36 36 H 1.09003 * 111.05558 * 276.11888 * 19 18 16 37 37 H 1.08997 * 111.18194 * 152.01086 * 19 18 16 38 38 H 1.08992 * 110.30812 * 204.69367 * 20 19 18 39 39 H 1.08995 * 110.31094 * 82.52004 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1794 3.4860 1.3181 6 16 1.7494 4.2972 2.8778 7 6 2.4808 5.8781 2.6123 8 1 2.9995 6.0847 1.6877 9 6 2.3905 6.8579 3.5912 10 7 2.9374 8.0387 3.3930 11 14 1.4929 6.5008 5.1900 12 1 2.4498 5.9483 6.1821 13 1 0.9029 7.7572 5.7178 14 1 0.4124 5.5130 4.9411 15 6 1.9954 -0.7660 -1.1376 16 6 3.4453 -1.1656 -0.8563 17 1 4.0475 -0.2737 -0.6828 18 6 4.0128 -1.9557 -2.0549 19 6 4.8608 -3.0532 -1.3527 20 6 4.0175 -3.3075 -0.0779 21 8 3.4997 -2.0197 0.2923 22 1 -0.3633 0.5931 -0.8393 23 1 -0.3634 -1.0233 -0.0940 24 1 -0.3633 0.4303 0.9332 25 1 1.5612 1.9273 -0.8309 26 1 3.0798 1.3443 -0.1082 27 1 2.0658 1.5014 2.1492 28 1 0.5473 2.0844 1.4265 29 1 3.2636 3.4592 1.2096 30 1 1.7447 4.0416 0.4872 31 1 2.8746 8.7233 4.0773 32 1 1.3928 -1.6628 -1.2818 33 1 1.9557 -0.1530 -2.0380 34 1 3.2093 -2.4023 -2.6407 35 1 4.6402 -1.3181 -2.6778 36 1 5.8528 -2.6793 -1.0994 37 1 4.9271 -3.9520 -1.9656 38 1 4.6462 -3.7056 0.7184 39 1 3.2005 -3.9952 -0.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:48 Heat of formation + Delta-G solvation = -58.754887 kcal Electronic energy + Delta-G solvation = -17189.836017 eV Core-core repulsion = 14451.107495 eV Total energy + Delta-G solvation = -2738.728523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74589 -37.48295 -33.04049 -32.39871 -32.28139 -30.46279 -26.90083 -26.23435 -25.55390 -23.03958 -21.81762 -21.19994 -20.32909 -17.43189 -17.08537 -16.26700 -15.72259 -15.23172 -14.94702 -14.91507 -14.28907 -13.95804 -13.77679 -13.51000 -13.12909 -12.81187 -12.35141 -12.12555 -11.94684 -11.84109 -11.72846 -11.43349 -11.38141 -11.15056 -11.08835 -11.00655 -10.90575 -10.28252 -10.07060 -9.73040 -9.58852 -8.96516 -8.50556 -8.24160 -6.88931 -6.24751 -3.96284 3.05121 3.34060 3.49502 3.54823 3.67597 4.02812 4.23519 4.35716 4.49334 4.62693 4.85733 4.89821 4.98956 5.07618 5.14079 5.19129 5.29600 5.34856 5.37079 5.42485 5.48572 5.54369 5.60055 5.65267 5.70126 5.75396 5.83187 5.93984 5.94970 6.07913 6.31479 6.56762 6.72439 6.92165 7.09095 7.17360 7.99143 8.47797 9.21478 10.84826 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035472 B = 0.003510 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.166493 B = 7974.329536 C = 8149.043892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.059 3.941 4 C -0.096 4.096 5 C -0.082 4.082 6 S -0.215 6.215 7 C -0.501 4.501 8 H 0.087 0.913 9 C 0.091 3.909 10 N -0.884 5.884 11 Si 0.862 3.138 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.237 1.237 15 C 0.046 3.954 16 C 0.085 3.915 17 H 0.081 0.919 18 C -0.152 4.152 19 C -0.157 4.157 20 C 0.046 3.954 21 O -0.356 6.356 22 H 0.023 0.977 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.270 0.730 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -22.240 -11.441 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.070 4.070 4 C -0.135 4.135 5 C -0.231 4.231 6 S 0.013 5.987 7 C -0.649 4.649 8 H 0.105 0.895 9 C -0.117 4.117 10 N -0.521 5.521 11 Si 0.687 3.313 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.161 1.161 15 C -0.083 4.083 16 C 0.027 3.973 17 H 0.098 0.902 18 C -0.190 4.190 19 C -0.194 4.194 20 C -0.030 4.030 21 O -0.275 6.275 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.718 -22.599 -9.833 24.656 hybrid contribution 0.216 0.982 -1.348 1.682 sum -0.502 -21.617 -11.181 24.343 Atomic orbital electron populations 1.22429 0.87394 1.01168 1.01391 1.61880 1.07622 1.13902 1.42161 1.22237 1.00090 0.87157 0.97525 1.21315 1.01297 0.93757 0.97128 1.23017 1.02718 0.97062 1.00254 1.84163 1.75486 1.15705 1.23383 1.22140 1.40121 0.95162 1.07458 0.89486 1.24797 0.94502 0.94026 0.98372 1.69940 1.43299 1.03825 1.34996 0.86661 0.81833 0.79197 0.83616 1.19340 1.20170 1.16143 1.22519 0.95890 0.98002 0.91880 1.22768 0.95453 0.93955 0.85109 0.90153 1.23193 0.99891 0.97838 0.98091 1.23290 0.99740 0.99216 0.97191 1.23371 0.96217 0.87023 0.96431 1.88607 1.85397 1.22361 1.31146 0.95884 0.91894 0.90696 0.94998 0.90862 0.90571 0.91623 0.91485 0.91699 0.92021 0.90768 0.93875 0.90525 0.89986 0.90340 0.90153 0.89934 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.23 60.06 0.55 0.83 16 2 N -0.53 -6.88 4.61 -242.92 -1.12 -8.00 16 3 C 0.06 0.82 4.79 -3.82 -0.02 0.80 16 4 C -0.10 -1.60 5.14 -26.73 -0.14 -1.73 16 5 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 6 S -0.22 -5.42 19.41 -107.50 -2.09 -7.51 16 7 C -0.50 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 9 C 0.09 2.71 5.50 -17.43 -0.10 2.62 16 10 N -0.88 -27.23 13.97 55.49 0.78 -26.46 16 11 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 15 C 0.05 0.48 4.55 -3.82 -0.02 0.46 16 16 C 0.09 0.90 3.58 -26.01 -0.09 0.80 16 17 H 0.08 0.92 6.77 -51.92 -0.35 0.57 16 18 C -0.15 -1.13 6.56 -24.71 -0.16 -1.29 16 19 C -0.16 -1.09 7.16 -24.40 -0.17 -1.26 16 20 C 0.05 0.41 7.78 38.18 0.30 0.71 16 21 O -0.36 -4.50 10.93 -35.23 -0.39 -4.88 16 22 H 0.02 0.25 8.07 -51.93 -0.42 -0.17 16 23 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16 24 H 0.07 0.91 6.73 -51.93 -0.35 0.56 16 25 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 26 H 0.07 1.00 6.63 -51.93 -0.34 0.66 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.08 6.67 -51.93 -0.35 0.73 16 29 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 30 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 33 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 34 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -32.37 323.46 -8.80 -41.18 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.82 Total: -2.43 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.67 Total: -14.05 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.35 Total: -34.46 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.39 Total: -4.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -2.09 Total: -7.51 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.37 -8.80 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds