Wall clock time and date at job start Mon Mar 30 2020 05:08:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46899 * 111.00578 * 2 1
4 4 C 1.53002 * 109.46902 * 66.04179 * 3 2 1
5 5 C 1.53000 * 109.47277 * 180.02562 * 4 3 2
6 6 S 1.80993 * 109.47133 * 180.02562 * 5 4 3
7 7 C 1.76205 * 99.99990 * 180.02562 * 6 5 4
8 8 H 1.08004 * 119.99746 * 359.97438 * 7 6 5
9 9 C 1.38793 * 120.00116 * 179.97438 * 7 6 5
10 10 N 1.31631 * 120.00143 * 179.97438 * 9 7 6
11 11 Si 1.86801 * 120.00032 * 359.97438 * 9 7 6
12 12 H 1.48500 * 109.46854 * 90.00137 * 11 9 7
13 13 H 1.48500 * 109.47253 * 209.99903 * 11 9 7
14 14 H 1.48493 * 109.47255 * 330.00126 * 11 9 7
15 15 C 1.46904 * 110.99915 * 236.04573 * 2 1 3
16 16 C 1.53000 * 109.47326 * 199.80053 * 15 2 1
17 17 H 1.09007 * 109.82080 * 301.61492 * 16 15 2
18 18 C 1.54376 * 109.83284 * 180.73105 * 16 15 2
19 19 C 1.55452 * 102.18544 * 219.18100 * 18 16 15
20 20 C 1.54945 * 100.99001 * 34.03781 * 19 18 16
21 21 O 1.43236 * 109.82903 * 62.49895 * 16 15 2
22 22 H 1.09002 * 109.47030 * 54.75068 * 1 2 3
23 23 H 1.09000 * 109.47605 * 174.74968 * 1 2 3
24 24 H 1.08994 * 109.46935 * 294.75684 * 1 2 3
25 25 H 1.09000 * 109.46889 * 306.04845 * 3 2 1
26 26 H 1.08992 * 109.47286 * 186.04504 * 3 2 1
27 27 H 1.09004 * 109.46611 * 60.00154 * 4 3 2
28 28 H 1.08996 * 109.47235 * 300.00730 * 4 3 2
29 29 H 1.09000 * 109.46820 * 300.00637 * 5 4 3
30 30 H 1.08999 * 109.46749 * 59.99949 * 5 4 3
31 31 H 0.96998 * 120.00458 * 180.02562 * 10 9 7
32 32 H 1.09002 * 109.47215 * 319.79846 * 15 2 1
33 33 H 1.09001 * 109.47253 * 79.79839 * 15 2 1
34 34 H 1.09004 * 110.84819 * 337.31644 * 18 16 15
35 35 H 1.09003 * 110.85259 * 100.93663 * 18 16 15
36 36 H 1.09003 * 111.05558 * 276.11888 * 19 18 16
37 37 H 1.08997 * 111.18194 * 152.01086 * 19 18 16
38 38 H 1.08992 * 110.30812 * 204.69367 * 20 19 18
39 39 H 1.08995 * 110.31094 * 82.52004 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3714 0.0000
4 6 1.6315 2.0574 1.3183
5 6 2.1794 3.4860 1.3181
6 16 1.7494 4.2972 2.8778
7 6 2.4808 5.8781 2.6123
8 1 2.9995 6.0847 1.6877
9 6 2.3905 6.8579 3.5912
10 7 2.9374 8.0387 3.3930
11 14 1.4929 6.5008 5.1900
12 1 2.4498 5.9483 6.1821
13 1 0.9029 7.7572 5.7178
14 1 0.4124 5.5130 4.9411
15 6 1.9954 -0.7660 -1.1376
16 6 3.4453 -1.1656 -0.8563
17 1 4.0475 -0.2737 -0.6828
18 6 4.0128 -1.9557 -2.0549
19 6 4.8608 -3.0532 -1.3527
20 6 4.0175 -3.3075 -0.0779
21 8 3.4997 -2.0197 0.2923
22 1 -0.3633 0.5931 -0.8393
23 1 -0.3634 -1.0233 -0.0940
24 1 -0.3633 0.4303 0.9332
25 1 1.5612 1.9273 -0.8309
26 1 3.0798 1.3443 -0.1082
27 1 2.0658 1.5014 2.1492
28 1 0.5473 2.0844 1.4265
29 1 3.2636 3.4592 1.2096
30 1 1.7447 4.0416 0.4872
31 1 2.8746 8.7233 4.0773
32 1 1.3928 -1.6628 -1.2818
33 1 1.9557 -0.1530 -2.0380
34 1 3.2093 -2.4023 -2.6407
35 1 4.6402 -1.3181 -2.6778
36 1 5.8528 -2.6793 -1.0994
37 1 4.9271 -3.9520 -1.9656
38 1 4.6462 -3.7056 0.7184
39 1 3.2005 -3.9952 -0.2958
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000074981920.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:48
Heat of formation + Delta-G solvation = -58.754887 kcal
Electronic energy + Delta-G solvation = -17189.836017 eV
Core-core repulsion = 14451.107495 eV
Total energy + Delta-G solvation = -2738.728523 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.74589 -37.48295 -33.04049 -32.39871 -32.28139 -30.46279 -26.90083 -26.23435
-25.55390 -23.03958 -21.81762 -21.19994 -20.32909 -17.43189 -17.08537 -16.26700
-15.72259 -15.23172 -14.94702 -14.91507 -14.28907 -13.95804 -13.77679 -13.51000
-13.12909 -12.81187 -12.35141 -12.12555 -11.94684 -11.84109 -11.72846 -11.43349
-11.38141 -11.15056 -11.08835 -11.00655 -10.90575 -10.28252 -10.07060 -9.73040
-9.58852 -8.96516 -8.50556 -8.24160 -6.88931 -6.24751 -3.96284 3.05121
3.34060 3.49502 3.54823 3.67597 4.02812 4.23519 4.35716 4.49334
4.62693 4.85733 4.89821 4.98956 5.07618 5.14079 5.19129 5.29600
5.34856 5.37079 5.42485 5.48572 5.54369 5.60055 5.65267 5.70126
5.75396 5.83187 5.93984 5.94970 6.07913 6.31479 6.56762 6.72439
6.92165 7.09095 7.17360 7.99143 8.47797 9.21478 10.84826
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.035472 B = 0.003510 C = 0.003435
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.166493 B = 7974.329536 C = 8149.043892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.532 5.532
3 C 0.059 3.941
4 C -0.096 4.096
5 C -0.082 4.082
6 S -0.215 6.215
7 C -0.501 4.501
8 H 0.087 0.913
9 C 0.091 3.909
10 N -0.884 5.884
11 Si 0.862 3.138
12 H -0.268 1.268
13 H -0.276 1.276
14 H -0.237 1.237
15 C 0.046 3.954
16 C 0.085 3.915
17 H 0.081 0.919
18 C -0.152 4.152
19 C -0.157 4.157
20 C 0.046 3.954
21 O -0.356 6.356
22 H 0.023 0.977
23 H 0.062 0.938
24 H 0.074 0.926
25 H 0.032 0.968
26 H 0.073 0.927
27 H 0.076 0.924
28 H 0.065 0.935
29 H 0.066 0.934
30 H 0.064 0.936
31 H 0.270 0.730
32 H 0.074 0.926
33 H 0.043 0.957
34 H 0.076 0.924
35 H 0.081 0.919
36 H 0.078 0.922
37 H 0.080 0.920
38 H 0.082 0.918
39 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.258 -22.240 -11.441 25.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.256 5.256
3 C -0.070 4.070
4 C -0.135 4.135
5 C -0.231 4.231
6 S 0.013 5.987
7 C -0.649 4.649
8 H 0.105 0.895
9 C -0.117 4.117
10 N -0.521 5.521
11 Si 0.687 3.313
12 H -0.193 1.193
13 H -0.202 1.202
14 H -0.161 1.161
15 C -0.083 4.083
16 C 0.027 3.973
17 H 0.098 0.902
18 C -0.190 4.190
19 C -0.194 4.194
20 C -0.030 4.030
21 O -0.275 6.275
22 H 0.041 0.959
23 H 0.081 0.919
24 H 0.093 0.907
25 H 0.050 0.950
26 H 0.091 0.909
27 H 0.094 0.906
28 H 0.084 0.916
29 H 0.085 0.915
30 H 0.083 0.917
31 H 0.080 0.920
32 H 0.092 0.908
33 H 0.061 0.939
34 H 0.095 0.905
35 H 0.100 0.900
36 H 0.097 0.903
37 H 0.098 0.902
38 H 0.101 0.899
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -0.718 -22.599 -9.833 24.656
hybrid contribution 0.216 0.982 -1.348 1.682
sum -0.502 -21.617 -11.181 24.343
Atomic orbital electron populations
1.22429 0.87394 1.01168 1.01391 1.61880 1.07622 1.13902 1.42161
1.22237 1.00090 0.87157 0.97525 1.21315 1.01297 0.93757 0.97128
1.23017 1.02718 0.97062 1.00254 1.84163 1.75486 1.15705 1.23383
1.22140 1.40121 0.95162 1.07458 0.89486 1.24797 0.94502 0.94026
0.98372 1.69940 1.43299 1.03825 1.34996 0.86661 0.81833 0.79197
0.83616 1.19340 1.20170 1.16143 1.22519 0.95890 0.98002 0.91880
1.22768 0.95453 0.93955 0.85109 0.90153 1.23193 0.99891 0.97838
0.98091 1.23290 0.99740 0.99216 0.97191 1.23371 0.96217 0.87023
0.96431 1.88607 1.85397 1.22361 1.31146 0.95884 0.91894 0.90696
0.94998 0.90862 0.90571 0.91623 0.91485 0.91699 0.92021 0.90768
0.93875 0.90525 0.89986 0.90340 0.90153 0.89934 0.92631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 9.23 60.06 0.55 0.83 16
2 N -0.53 -6.88 4.61 -242.92 -1.12 -8.00 16
3 C 0.06 0.82 4.79 -3.82 -0.02 0.80 16
4 C -0.10 -1.60 5.14 -26.73 -0.14 -1.73 16
5 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16
6 S -0.22 -5.42 19.41 -107.50 -2.09 -7.51 16
7 C -0.50 -14.87 10.04 30.94 0.31 -14.56 16
8 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16
9 C 0.09 2.71 5.50 -17.43 -0.10 2.62 16
10 N -0.88 -27.23 13.97 55.49 0.78 -26.46 16
11 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16
12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16
13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
14 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16
15 C 0.05 0.48 4.55 -3.82 -0.02 0.46 16
16 C 0.09 0.90 3.58 -26.01 -0.09 0.80 16
17 H 0.08 0.92 6.77 -51.92 -0.35 0.57 16
18 C -0.15 -1.13 6.56 -24.71 -0.16 -1.29 16
19 C -0.16 -1.09 7.16 -24.40 -0.17 -1.26 16
20 C 0.05 0.41 7.78 38.18 0.30 0.71 16
21 O -0.36 -4.50 10.93 -35.23 -0.39 -4.88 16
22 H 0.02 0.25 8.07 -51.93 -0.42 -0.17 16
23 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16
24 H 0.07 0.91 6.73 -51.93 -0.35 0.56 16
25 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16
26 H 0.07 1.00 6.63 -51.93 -0.34 0.66 16
27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
28 H 0.07 1.08 6.67 -51.93 -0.35 0.73 16
29 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16
30 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16
31 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16
32 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16
33 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16
34 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16
35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
LS Contribution 323.46 15.07 4.87 4.87
Total: -1.00 -32.37 323.46 -8.80 -41.18
By element:
Atomic # 1 Polarization: 4.40 SS G_CDS: -6.82 Total: -2.43 kcal
Atomic # 6 Polarization: -14.73 SS G_CDS: 0.67 Total: -14.05 kcal
Atomic # 7 Polarization: -34.12 SS G_CDS: -0.35 Total: -34.46 kcal
Atomic # 8 Polarization: -4.50 SS G_CDS: -0.39 Total: -4.88 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal
Atomic # 16 Polarization: -5.42 SS G_CDS: -2.09 Total: -7.51 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -32.37 -8.80 -41.18 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074981920.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal
(2) G-P(sol) polarization free energy of solvation -32.372 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds