Wall clock time and date at job start Mon Mar 30 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00578 * 2 1 4 4 C 1.53002 * 109.46902 * 66.04179 * 3 2 1 5 5 C 1.53000 * 109.47277 * 180.02562 * 4 3 2 6 6 S 1.80993 * 109.47133 * 180.02562 * 5 4 3 7 7 C 1.76205 * 99.99990 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99746 * 359.97438 * 7 6 5 9 9 C 1.38793 * 120.00116 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00143 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46854 * 90.00137 * 11 9 7 13 13 H 1.48500 * 109.47253 * 209.99903 * 11 9 7 14 14 H 1.48493 * 109.47255 * 330.00126 * 11 9 7 15 15 C 1.46904 * 110.99915 * 236.04573 * 2 1 3 16 16 C 1.53000 * 109.47326 * 199.80053 * 15 2 1 17 17 H 1.09007 * 109.82080 * 301.61492 * 16 15 2 18 18 C 1.54376 * 109.83284 * 180.73105 * 16 15 2 19 19 C 1.55452 * 102.18544 * 219.18100 * 18 16 15 20 20 C 1.54945 * 100.99001 * 34.03781 * 19 18 16 21 21 O 1.43236 * 109.82903 * 62.49895 * 16 15 2 22 22 H 1.09002 * 109.47030 * 54.75068 * 1 2 3 23 23 H 1.09000 * 109.47605 * 174.74968 * 1 2 3 24 24 H 1.08994 * 109.46935 * 294.75684 * 1 2 3 25 25 H 1.09000 * 109.46889 * 306.04845 * 3 2 1 26 26 H 1.08992 * 109.47286 * 186.04504 * 3 2 1 27 27 H 1.09004 * 109.46611 * 60.00154 * 4 3 2 28 28 H 1.08996 * 109.47235 * 300.00730 * 4 3 2 29 29 H 1.09000 * 109.46820 * 300.00637 * 5 4 3 30 30 H 1.08999 * 109.46749 * 59.99949 * 5 4 3 31 31 H 0.96998 * 120.00458 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47215 * 319.79846 * 15 2 1 33 33 H 1.09001 * 109.47253 * 79.79839 * 15 2 1 34 34 H 1.09004 * 110.84819 * 337.31644 * 18 16 15 35 35 H 1.09003 * 110.85259 * 100.93663 * 18 16 15 36 36 H 1.09003 * 111.05558 * 276.11888 * 19 18 16 37 37 H 1.08997 * 111.18194 * 152.01086 * 19 18 16 38 38 H 1.08992 * 110.30812 * 204.69367 * 20 19 18 39 39 H 1.08995 * 110.31094 * 82.52004 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1794 3.4860 1.3181 6 16 1.7494 4.2972 2.8778 7 6 2.4808 5.8781 2.6123 8 1 2.9995 6.0847 1.6877 9 6 2.3905 6.8579 3.5912 10 7 2.9374 8.0387 3.3930 11 14 1.4929 6.5008 5.1900 12 1 2.4498 5.9483 6.1821 13 1 0.9029 7.7572 5.7178 14 1 0.4124 5.5130 4.9411 15 6 1.9954 -0.7660 -1.1376 16 6 3.4453 -1.1656 -0.8563 17 1 4.0475 -0.2737 -0.6828 18 6 4.0128 -1.9557 -2.0549 19 6 4.8608 -3.0532 -1.3527 20 6 4.0175 -3.3075 -0.0779 21 8 3.4997 -2.0197 0.2923 22 1 -0.3633 0.5931 -0.8393 23 1 -0.3634 -1.0233 -0.0940 24 1 -0.3633 0.4303 0.9332 25 1 1.5612 1.9273 -0.8309 26 1 3.0798 1.3443 -0.1082 27 1 2.0658 1.5014 2.1492 28 1 0.5473 2.0844 1.4265 29 1 3.2636 3.4592 1.2096 30 1 1.7447 4.0416 0.4872 31 1 2.8746 8.7233 4.0773 32 1 1.3928 -1.6628 -1.2818 33 1 1.9557 -0.1530 -2.0380 34 1 3.2093 -2.4023 -2.6407 35 1 4.6402 -1.3181 -2.6778 36 1 5.8528 -2.6793 -1.0994 37 1 4.9271 -3.9520 -1.9656 38 1 4.6462 -3.7056 0.7184 39 1 3.2005 -3.9952 -0.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:47 Heat of formation + Delta-G solvation = -80.336131 kcal Electronic energy + Delta-G solvation = -17190.771850 eV Core-core repulsion = 14451.107495 eV Total energy + Delta-G solvation = -2739.664356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50691 -38.47454 -34.69768 -34.33589 -32.98490 -31.25927 -28.19177 -27.77740 -27.03903 -24.08280 -22.54182 -22.20069 -21.30822 -19.62518 -17.82620 -17.13113 -17.03397 -16.82705 -16.36734 -16.05783 -15.47157 -15.26050 -14.94773 -14.73738 -14.22428 -14.01054 -13.62592 -13.46561 -13.35960 -13.01487 -12.79820 -12.74137 -12.57445 -12.49017 -12.09862 -11.99386 -11.88934 -11.76159 -11.55975 -11.46046 -11.16693 -10.57134 -10.39577 -9.19077 -8.99951 -8.52649 -6.24049 1.11822 1.32089 1.47844 1.73490 2.24785 2.67720 2.82248 2.85368 3.18705 3.64115 3.75766 3.92328 4.02170 4.13650 4.21649 4.27700 4.34947 4.41155 4.45634 4.55298 4.60689 4.65911 4.72932 4.78962 4.80308 4.85587 4.94160 5.00390 5.05767 5.09602 5.16484 5.27765 5.31674 5.69126 6.05467 6.09010 6.13902 6.34476 6.91499 8.60568 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035472 B = 0.003510 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.166493 B = 7974.329536 C = 8149.043892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.069 3.931 4 C -0.083 4.083 5 C -0.068 4.068 6 S -0.221 6.221 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.038 3.962 10 N -0.923 5.923 11 Si 0.926 3.074 12 H -0.262 1.262 13 H -0.261 1.261 14 H -0.230 1.230 15 C 0.048 3.952 16 C 0.079 3.921 17 H 0.064 0.936 18 C -0.146 4.146 19 C -0.151 4.151 20 C 0.038 3.962 21 O -0.391 6.391 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.277 0.723 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -24.215 -11.908 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.061 4.061 4 C -0.122 4.122 5 C -0.217 4.217 6 S 0.007 5.993 7 C -0.670 4.670 8 H 0.068 0.932 9 C -0.167 4.167 10 N -0.561 5.561 11 Si 0.747 3.253 12 H -0.186 1.186 13 H -0.186 1.186 14 H -0.153 1.153 15 C -0.080 4.080 16 C 0.021 3.979 17 H 0.082 0.918 18 C -0.184 4.184 19 C -0.188 4.188 20 C -0.038 4.038 21 O -0.311 6.311 22 H 0.048 0.952 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.507 -24.583 -10.316 26.703 hybrid contribution 0.514 1.541 -1.297 2.079 sum -0.992 -23.042 -11.613 25.823 Atomic orbital electron populations 1.22446 0.86609 1.02200 1.01112 1.61839 1.08494 1.13070 1.43850 1.22042 1.00239 0.87970 0.95819 1.21184 1.01159 0.91284 0.98559 1.23067 1.02752 0.98642 0.97255 1.83880 1.75163 1.13267 1.27028 1.22341 1.40363 0.97923 1.06362 0.93153 1.25778 0.95192 0.93714 1.01981 1.70035 1.44519 1.04939 1.36584 0.85708 0.80842 0.79791 0.78975 1.18630 1.18562 1.15299 1.22572 0.95946 0.98134 0.91379 1.22841 0.95375 0.93717 0.85966 0.91827 1.23185 1.00401 0.97711 0.97070 1.23279 0.99105 0.99972 0.96453 1.23560 0.96894 0.85857 0.97527 1.88559 1.85802 1.23968 1.32774 0.95173 0.90423 0.91751 0.94276 0.90892 0.91567 0.91226 0.91756 0.91543 0.91356 0.89735 0.92663 0.89127 0.89007 0.90601 0.87945 0.89719 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.23 127.69 1.18 1.69 16 2 N -0.55 -13.30 4.61 -922.46 -4.25 -17.55 16 3 C 0.07 1.83 4.79 86.30 0.41 2.24 16 4 C -0.08 -2.67 5.14 30.60 0.16 -2.52 16 5 C -0.07 -2.73 5.67 71.98 0.41 -2.32 16 6 S -0.22 -11.08 19.41 -56.49 -1.10 -12.18 16 7 C -0.52 -31.62 10.04 67.95 0.68 -30.94 16 8 H 0.05 3.30 8.03 -2.91 -0.02 3.28 16 9 C 0.04 2.28 5.50 84.86 0.47 2.75 16 10 N -0.92 -57.74 13.97 21.65 0.30 -57.44 16 11 Si 0.93 45.13 27.74 68.60 1.90 47.03 16 12 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.23 -10.82 6.74 99.48 0.67 -10.15 16 15 C 0.05 0.91 4.55 86.30 0.39 1.30 16 16 C 0.08 1.56 3.58 31.06 0.11 1.67 16 17 H 0.06 1.42 6.77 -2.38 -0.02 1.41 16 18 C -0.15 -1.82 6.56 31.91 0.21 -1.61 16 19 C -0.15 -1.76 7.16 32.10 0.23 -1.53 16 20 C 0.04 0.61 7.78 72.65 0.57 1.18 16 21 O -0.39 -9.54 10.93 -148.98 -1.63 -11.17 16 22 H 0.03 0.59 8.07 -2.39 -0.02 0.57 16 23 H 0.08 1.39 7.85 -2.39 -0.02 1.37 16 24 H 0.06 1.47 6.73 -2.39 -0.02 1.46 16 25 H 0.04 0.98 8.07 -2.39 -0.02 0.97 16 26 H 0.07 1.94 6.63 -2.39 -0.02 1.92 16 27 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.07 2.20 6.67 -2.39 -0.02 2.18 16 29 H 0.06 2.61 8.14 -2.40 -0.02 2.59 16 30 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 31 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.08 1.44 7.75 -2.39 -0.02 1.42 16 33 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16 34 H 0.09 0.89 7.85 -2.38 -0.02 0.87 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.79 323.46 1.00 -68.79 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.96 Total: 10.61 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.81 Total: -28.10 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -3.95 Total: -74.99 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.63 Total: -11.17 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.10 Total: -12.18 kcal Total: -69.79 1.00 -68.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.547 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds