Wall clock time and date at job start Mon Mar 30 2020 05:08:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46899 * 111.00578 * 2 1
4 4 C 1.53002 * 109.46902 * 66.04179 * 3 2 1
5 5 C 1.53000 * 109.47277 * 180.02562 * 4 3 2
6 6 S 1.80993 * 109.47133 * 180.02562 * 5 4 3
7 7 C 1.76205 * 99.99990 * 180.02562 * 6 5 4
8 8 H 1.08004 * 119.99746 * 359.97438 * 7 6 5
9 9 C 1.38793 * 120.00116 * 179.97438 * 7 6 5
10 10 N 1.31631 * 120.00143 * 179.97438 * 9 7 6
11 11 Si 1.86801 * 120.00032 * 359.97438 * 9 7 6
12 12 H 1.48500 * 109.46854 * 90.00137 * 11 9 7
13 13 H 1.48500 * 109.47253 * 209.99903 * 11 9 7
14 14 H 1.48493 * 109.47255 * 330.00126 * 11 9 7
15 15 C 1.46904 * 110.99915 * 236.04573 * 2 1 3
16 16 C 1.53000 * 109.47326 * 199.80053 * 15 2 1
17 17 H 1.09007 * 109.82080 * 301.61492 * 16 15 2
18 18 C 1.54376 * 109.83284 * 180.73105 * 16 15 2
19 19 C 1.55452 * 102.18544 * 219.18100 * 18 16 15
20 20 C 1.54945 * 100.99001 * 34.03781 * 19 18 16
21 21 O 1.43236 * 109.82903 * 62.49895 * 16 15 2
22 22 H 1.09002 * 109.47030 * 54.75068 * 1 2 3
23 23 H 1.09000 * 109.47605 * 174.74968 * 1 2 3
24 24 H 1.08994 * 109.46935 * 294.75684 * 1 2 3
25 25 H 1.09000 * 109.46889 * 306.04845 * 3 2 1
26 26 H 1.08992 * 109.47286 * 186.04504 * 3 2 1
27 27 H 1.09004 * 109.46611 * 60.00154 * 4 3 2
28 28 H 1.08996 * 109.47235 * 300.00730 * 4 3 2
29 29 H 1.09000 * 109.46820 * 300.00637 * 5 4 3
30 30 H 1.08999 * 109.46749 * 59.99949 * 5 4 3
31 31 H 0.96998 * 120.00458 * 180.02562 * 10 9 7
32 32 H 1.09002 * 109.47215 * 319.79846 * 15 2 1
33 33 H 1.09001 * 109.47253 * 79.79839 * 15 2 1
34 34 H 1.09004 * 110.84819 * 337.31644 * 18 16 15
35 35 H 1.09003 * 110.85259 * 100.93663 * 18 16 15
36 36 H 1.09003 * 111.05558 * 276.11888 * 19 18 16
37 37 H 1.08997 * 111.18194 * 152.01086 * 19 18 16
38 38 H 1.08992 * 110.30812 * 204.69367 * 20 19 18
39 39 H 1.08995 * 110.31094 * 82.52004 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3714 0.0000
4 6 1.6315 2.0574 1.3183
5 6 2.1794 3.4860 1.3181
6 16 1.7494 4.2972 2.8778
7 6 2.4808 5.8781 2.6123
8 1 2.9995 6.0847 1.6877
9 6 2.3905 6.8579 3.5912
10 7 2.9374 8.0387 3.3930
11 14 1.4929 6.5008 5.1900
12 1 2.4498 5.9483 6.1821
13 1 0.9029 7.7572 5.7178
14 1 0.4124 5.5130 4.9411
15 6 1.9954 -0.7660 -1.1376
16 6 3.4453 -1.1656 -0.8563
17 1 4.0475 -0.2737 -0.6828
18 6 4.0128 -1.9557 -2.0549
19 6 4.8608 -3.0532 -1.3527
20 6 4.0175 -3.3075 -0.0779
21 8 3.4997 -2.0197 0.2923
22 1 -0.3633 0.5931 -0.8393
23 1 -0.3634 -1.0233 -0.0940
24 1 -0.3633 0.4303 0.9332
25 1 1.5612 1.9273 -0.8309
26 1 3.0798 1.3443 -0.1082
27 1 2.0658 1.5014 2.1492
28 1 0.5473 2.0844 1.4265
29 1 3.2636 3.4592 1.2096
30 1 1.7447 4.0416 0.4872
31 1 2.8746 8.7233 4.0773
32 1 1.3928 -1.6628 -1.2818
33 1 1.9557 -0.1530 -2.0380
34 1 3.2093 -2.4023 -2.6407
35 1 4.6402 -1.3181 -2.6778
36 1 5.8528 -2.6793 -1.0994
37 1 4.9271 -3.9520 -1.9656
38 1 4.6462 -3.7056 0.7184
39 1 3.2005 -3.9952 -0.2958
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000074981920.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:47
Heat of formation + Delta-G solvation = -80.336131 kcal
Electronic energy + Delta-G solvation = -17190.771850 eV
Core-core repulsion = 14451.107495 eV
Total energy + Delta-G solvation = -2739.664356 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.50691 -38.47454 -34.69768 -34.33589 -32.98490 -31.25927 -28.19177 -27.77740
-27.03903 -24.08280 -22.54182 -22.20069 -21.30822 -19.62518 -17.82620 -17.13113
-17.03397 -16.82705 -16.36734 -16.05783 -15.47157 -15.26050 -14.94773 -14.73738
-14.22428 -14.01054 -13.62592 -13.46561 -13.35960 -13.01487 -12.79820 -12.74137
-12.57445 -12.49017 -12.09862 -11.99386 -11.88934 -11.76159 -11.55975 -11.46046
-11.16693 -10.57134 -10.39577 -9.19077 -8.99951 -8.52649 -6.24049 1.11822
1.32089 1.47844 1.73490 2.24785 2.67720 2.82248 2.85368 3.18705
3.64115 3.75766 3.92328 4.02170 4.13650 4.21649 4.27700 4.34947
4.41155 4.45634 4.55298 4.60689 4.65911 4.72932 4.78962 4.80308
4.85587 4.94160 5.00390 5.05767 5.09602 5.16484 5.27765 5.31674
5.69126 6.05467 6.09010 6.13902 6.34476 6.91499 8.60568
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.035472 B = 0.003510 C = 0.003435
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.166493 B = 7974.329536 C = 8149.043892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.549 5.549
3 C 0.069 3.931
4 C -0.083 4.083
5 C -0.068 4.068
6 S -0.221 6.221
7 C -0.522 4.522
8 H 0.050 0.950
9 C 0.038 3.962
10 N -0.923 5.923
11 Si 0.926 3.074
12 H -0.262 1.262
13 H -0.261 1.261
14 H -0.230 1.230
15 C 0.048 3.952
16 C 0.079 3.921
17 H 0.064 0.936
18 C -0.146 4.146
19 C -0.151 4.151
20 C 0.038 3.962
21 O -0.391 6.391
22 H 0.030 0.970
23 H 0.077 0.923
24 H 0.064 0.936
25 H 0.039 0.961
26 H 0.073 0.927
27 H 0.066 0.934
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.066 0.934
31 H 0.277 0.723
32 H 0.084 0.916
33 H 0.055 0.945
34 H 0.090 0.910
35 H 0.091 0.909
36 H 0.075 0.925
37 H 0.102 0.898
38 H 0.085 0.915
39 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.050 -24.215 -11.908 27.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.273 5.273
3 C -0.061 4.061
4 C -0.122 4.122
5 C -0.217 4.217
6 S 0.007 5.993
7 C -0.670 4.670
8 H 0.068 0.932
9 C -0.167 4.167
10 N -0.561 5.561
11 Si 0.747 3.253
12 H -0.186 1.186
13 H -0.186 1.186
14 H -0.153 1.153
15 C -0.080 4.080
16 C 0.021 3.979
17 H 0.082 0.918
18 C -0.184 4.184
19 C -0.188 4.188
20 C -0.038 4.038
21 O -0.311 6.311
22 H 0.048 0.952
23 H 0.096 0.904
24 H 0.082 0.918
25 H 0.057 0.943
26 H 0.091 0.909
27 H 0.084 0.916
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.085 0.915
31 H 0.086 0.914
32 H 0.103 0.897
33 H 0.073 0.927
34 H 0.109 0.891
35 H 0.110 0.890
36 H 0.094 0.906
37 H 0.121 0.879
38 H 0.103 0.897
39 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -1.507 -24.583 -10.316 26.703
hybrid contribution 0.514 1.541 -1.297 2.079
sum -0.992 -23.042 -11.613 25.823
Atomic orbital electron populations
1.22446 0.86609 1.02200 1.01112 1.61839 1.08494 1.13070 1.43850
1.22042 1.00239 0.87970 0.95819 1.21184 1.01159 0.91284 0.98559
1.23067 1.02752 0.98642 0.97255 1.83880 1.75163 1.13267 1.27028
1.22341 1.40363 0.97923 1.06362 0.93153 1.25778 0.95192 0.93714
1.01981 1.70035 1.44519 1.04939 1.36584 0.85708 0.80842 0.79791
0.78975 1.18630 1.18562 1.15299 1.22572 0.95946 0.98134 0.91379
1.22841 0.95375 0.93717 0.85966 0.91827 1.23185 1.00401 0.97711
0.97070 1.23279 0.99105 0.99972 0.96453 1.23560 0.96894 0.85857
0.97527 1.88559 1.85802 1.23968 1.32774 0.95173 0.90423 0.91751
0.94276 0.90892 0.91567 0.91226 0.91756 0.91543 0.91356 0.89735
0.92663 0.89127 0.89007 0.90601 0.87945 0.89719 0.91742
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.51 9.23 127.69 1.18 1.69 16
2 N -0.55 -13.30 4.61 -922.46 -4.25 -17.55 16
3 C 0.07 1.83 4.79 86.30 0.41 2.24 16
4 C -0.08 -2.67 5.14 30.60 0.16 -2.52 16
5 C -0.07 -2.73 5.67 71.98 0.41 -2.32 16
6 S -0.22 -11.08 19.41 -56.49 -1.10 -12.18 16
7 C -0.52 -31.62 10.04 67.95 0.68 -30.94 16
8 H 0.05 3.30 8.03 -2.91 -0.02 3.28 16
9 C 0.04 2.28 5.50 84.86 0.47 2.75 16
10 N -0.92 -57.74 13.97 21.65 0.30 -57.44 16
11 Si 0.93 45.13 27.74 68.60 1.90 47.03 16
12 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16
13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
14 H -0.23 -10.82 6.74 99.48 0.67 -10.15 16
15 C 0.05 0.91 4.55 86.30 0.39 1.30 16
16 C 0.08 1.56 3.58 31.06 0.11 1.67 16
17 H 0.06 1.42 6.77 -2.38 -0.02 1.41 16
18 C -0.15 -1.82 6.56 31.91 0.21 -1.61 16
19 C -0.15 -1.76 7.16 32.10 0.23 -1.53 16
20 C 0.04 0.61 7.78 72.65 0.57 1.18 16
21 O -0.39 -9.54 10.93 -148.98 -1.63 -11.17 16
22 H 0.03 0.59 8.07 -2.39 -0.02 0.57 16
23 H 0.08 1.39 7.85 -2.39 -0.02 1.37 16
24 H 0.06 1.47 6.73 -2.39 -0.02 1.46 16
25 H 0.04 0.98 8.07 -2.39 -0.02 0.97 16
26 H 0.07 1.94 6.63 -2.39 -0.02 1.92 16
27 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16
28 H 0.07 2.20 6.67 -2.39 -0.02 2.18 16
29 H 0.06 2.61 8.14 -2.40 -0.02 2.59 16
30 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16
31 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16
32 H 0.08 1.44 7.75 -2.39 -0.02 1.42 16
33 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16
34 H 0.09 0.89 7.85 -2.38 -0.02 0.87 16
35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
37 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16
38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
Total: -1.00 -69.79 323.46 1.00 -68.79
By element:
Atomic # 1 Polarization: 9.66 SS G_CDS: 0.96 Total: 10.61 kcal
Atomic # 6 Polarization: -32.91 SS G_CDS: 4.81 Total: -28.10 kcal
Atomic # 7 Polarization: -71.04 SS G_CDS: -3.95 Total: -74.99 kcal
Atomic # 8 Polarization: -9.54 SS G_CDS: -1.63 Total: -11.17 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal
Atomic # 16 Polarization: -11.08 SS G_CDS: -1.10 Total: -12.18 kcal
Total: -69.79 1.00 -68.79 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074981920.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.547 kcal
(2) G-P(sol) polarization free energy of solvation -69.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.334 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.336 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds