Wall clock time and date at job start Mon Mar 30 2020 04:16:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52988 * 1
3 3 C 1.52998 * 109.47559 * 2 1
4 4 C 1.53004 * 109.47349 * 239.99846 * 2 1 3
5 5 O 1.45204 * 109.47171 * 119.99721 * 2 1 3
6 6 C 1.34641 * 116.99610 * 59.99856 * 5 2 1
7 7 O 1.21505 * 120.00036 * 0.28030 * 6 5 2
8 8 N 1.34775 * 119.99843 * 180.02562 * 6 5 2
9 9 C 1.47427 * 125.64699 * 354.50255 * 8 6 5
10 10 C 1.55135 * 104.71897 * 155.81744 * 9 8 6
11 11 H 1.09003 * 111.22729 * 279.17568 * 10 9 8
12 12 F 1.39901 * 110.90267 * 155.27713 * 10 9 8
13 13 C 1.55153 * 101.48815 * 37.29707 * 10 9 8
14 14 C 1.47025 * 125.65002 * 174.81620 * 8 6 5
15 15 H 1.08998 * 109.88525 * 61.59964 * 14 8 6
16 16 C 1.50707 * 109.87679 * 300.43946 * 14 8 6
17 17 H 1.07999 * 120.00032 * 330.84231 * 16 14 8
18 18 C 1.37876 * 119.99995 * 150.84444 * 16 14 8
19 19 N 1.31517 * 119.99712 * 6.17268 * 18 16 14
20 20 Si 1.86796 * 120.00287 * 186.17496 * 18 16 14
21 21 H 1.48500 * 109.47142 * 59.99636 * 20 18 16
22 22 H 1.48490 * 109.47298 * 179.97438 * 20 18 16
23 23 H 1.48504 * 109.47193 * 300.00121 * 20 18 16
24 24 H 1.09000 * 109.47256 * 300.00454 * 1 2 3
25 25 H 1.09004 * 109.47137 * 60.00128 * 1 2 3
26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.47614 * 179.97438 * 3 2 1
28 28 H 1.09002 * 109.47313 * 300.00095 * 3 2 1
29 29 H 1.09000 * 109.47207 * 59.99516 * 3 2 1
30 30 H 1.09006 * 109.46758 * 300.00064 * 4 2 1
31 31 H 1.08994 * 109.47018 * 59.99872 * 4 2 1
32 32 H 1.09000 * 109.47004 * 180.02562 * 4 2 1
33 33 H 1.08995 * 110.37299 * 274.74455 * 9 8 6
34 34 H 1.08995 * 110.36484 * 37.07138 * 9 8 6
35 35 H 1.08998 * 110.72582 * 205.97160 * 13 10 9
36 36 H 1.09007 * 110.72278 * 82.69100 * 13 10 9
37 37 H 0.97003 * 120.00064 * 174.96536 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0139 -0.6844 1.1856
6 6 1.6521 -1.9723 1.3384
7 8 0.9553 -2.5110 0.5013
8 7 2.0670 -2.6654 2.4172
9 6 3.0073 -2.1773 3.4425
10 6 2.6802 -3.0138 4.7074
11 1 1.8124 -2.6136 5.2317
12 9 3.7881 -3.0852 5.5588
13 6 2.3648 -4.4007 4.0877
14 6 1.6620 -4.0357 2.7631
15 1 1.9724 -4.7237 1.9768
16 6 0.1669 -4.0984 2.9421
17 1 -0.3736 -3.2264 3.2794
18 6 -0.5109 -5.2690 2.6752
19 7 0.1571 -6.3634 2.3823
20 14 -2.3778 -5.3007 2.7295
21 1 -2.9183 -4.3386 1.7358
22 1 -2.8593 -6.6678 2.4068
23 1 -2.8400 -4.9204 4.0886
24 1 -0.3634 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3634 -1.0276 -0.0005
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6766 1.9563 0.8899
30 1 1.6766 -1.7490 -1.2492
31 1 1.6766 -0.2075 -2.1392
32 1 3.1299 -0.7217 -1.2489
33 1 4.0361 -2.3496 3.1266
34 1 2.8413 -1.1175 3.6357
35 1 1.6970 -4.9695 4.7346
36 1 3.2834 -4.9557 3.8965
37 1 -0.3145 -7.2031 2.2663
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000116588127.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:16:09
Heat of formation + Delta-G solvation = -132.240491 kcal
Electronic energy + Delta-G solvation = -20771.389840 eV
Core-core repulsion = 17463.261567 eV
Total energy + Delta-G solvation = -3308.128274 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-47.12712 -40.02613 -37.71942 -35.55687 -33.63913 -32.62087 -30.17014 -28.33962
-27.19691 -27.08459 -24.75893 -23.14886 -21.14265 -20.02796 -18.71554 -17.20393
-16.93144 -16.02459 -15.73701 -15.40259 -15.02956 -14.45062 -14.16225 -13.91775
-13.63319 -13.43876 -12.88183 -12.53306 -12.41001 -12.31443 -11.91186 -11.73352
-11.60774 -11.56061 -11.44484 -11.02790 -10.92784 -10.87260 -10.65551 -10.40059
-10.09436 -9.89053 -9.77851 -9.43238 -9.17769 -8.51640 -7.73951 -6.11509
-4.17932 2.84588 3.30095 3.34886 3.39941 3.74707 4.35735 4.51596
4.85510 4.99357 5.01330 5.17209 5.22189 5.27131 5.40732 5.54910
5.61939 5.72695 5.83728 5.87243 5.93124 6.01652 6.09382 6.13449
6.16028 6.49538 6.60399 6.68954 6.79024 6.80200 7.04249 7.38123
7.49863 7.81254 8.09390 8.42743 8.88266 9.26993 9.49211 10.94635
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.015372 B = 0.008911 C = 0.006257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1821.101435 B = 3141.378480 C = 4473.980493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.137 3.863
3 C -0.137 4.137
4 C -0.182 4.182
5 O -0.376 6.376
6 C 0.664 3.336
7 O -0.549 6.549
8 N -0.592 5.592
9 C 0.085 3.915
10 C 0.073 3.927
11 H 0.099 0.901
12 F -0.215 7.215
13 C -0.133 4.133
14 C 0.273 3.727
15 H 0.065 0.935
16 C -0.516 4.516
17 H 0.057 0.943
18 C 0.074 3.926
19 N -0.886 5.886
20 Si 0.898 3.102
21 H -0.274 1.274
22 H -0.286 1.286
23 H -0.277 1.277
24 H 0.056 0.944
25 H 0.062 0.938
26 H 0.093 0.907
27 H 0.063 0.937
28 H 0.074 0.926
29 H 0.063 0.937
30 H 0.091 0.909
31 H 0.063 0.937
32 H 0.055 0.945
33 H 0.068 0.932
34 H 0.075 0.925
35 H 0.091 0.909
36 H 0.062 0.938
37 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.444 11.054 -1.204 11.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.099 3.901
3 C -0.195 4.195
4 C -0.239 4.239
5 O -0.293 6.293
6 C 0.418 3.582
7 O -0.436 6.436
8 N -0.333 5.333
9 C -0.040 4.040
10 C 0.036 3.964
11 H 0.117 0.883
12 F -0.196 7.196
13 C -0.172 4.172
14 C 0.175 3.825
15 H 0.083 0.917
16 C -0.555 4.555
17 H 0.075 0.925
18 C -0.130 4.130
19 N -0.523 5.523
20 Si 0.725 3.275
21 H -0.200 1.200
22 H -0.212 1.212
23 H -0.202 1.202
24 H 0.075 0.925
25 H 0.081 0.919
26 H 0.112 0.888
27 H 0.082 0.918
28 H 0.093 0.907
29 H 0.082 0.918
30 H 0.110 0.890
31 H 0.082 0.918
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.093 0.907
35 H 0.110 0.890
36 H 0.080 0.920
37 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 4.178 10.773 -1.696 11.679
hybrid contribution -0.964 -0.014 0.054 0.966
sum 3.214 10.760 -1.642 11.349
Atomic orbital electron populations
1.22506 0.94337 1.05547 1.01622 1.21862 0.94225 0.91138 0.82854
1.21821 1.01856 0.93227 1.02560 1.22505 1.01118 1.03995 0.96306
1.86267 1.72316 1.24974 1.45706 1.17441 0.79222 0.79531 0.82022
1.90876 1.40867 1.69816 1.42056 1.47824 1.46149 1.17448 1.21929
1.22608 0.94157 0.98600 0.88598 1.22851 0.85487 0.99621 0.88446
0.88317 1.92748 1.56559 1.97502 1.72792 1.23393 1.00685 0.93933
0.99159 1.19395 0.94782 0.75922 0.92385 0.91677 1.21096 0.91064
0.97818 1.45489 0.92484 1.24907 0.98733 0.95647 0.93702 1.69880
1.36160 0.99301 1.46933 0.86562 0.85172 0.77191 0.78535 1.19975
1.21172 1.20244 0.92504 0.91886 0.88822 0.91834 0.90689 0.91794
0.89009 0.91807 0.92596 0.91371 0.90686 0.88997 0.91960 0.92436
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.89 8.37 37.15 0.31 -2.58 16
2 C 0.14 2.13 1.13 -90.62 -0.10 2.02 16
3 C -0.14 -1.59 8.85 37.16 0.33 -1.26 16
4 C -0.18 -2.75 8.37 37.16 0.31 -2.44 16
5 O -0.38 -7.10 9.39 -40.33 -0.38 -7.48 16
6 C 0.66 14.83 7.65 54.05 0.41 15.24 16
7 O -0.55 -13.78 11.77 -19.28 -0.23 -14.01 16
8 N -0.59 -13.03 3.07 -169.92 -0.52 -13.55 16
9 C 0.09 1.52 6.77 -2.41 -0.02 1.51 16
10 C 0.07 1.31 4.87 -24.46 -0.12 1.19 16
11 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16
12 F -0.22 -3.76 17.23 2.25 0.04 -3.72 16
13 C -0.13 -2.78 6.29 -24.90 -0.16 -2.93 16
14 C 0.27 6.69 2.83 -68.10 -0.19 6.50 16
15 H 0.07 1.82 7.58 -51.93 -0.39 1.43 16
16 C -0.52 -13.90 7.73 -34.44 -0.27 -14.17 16
17 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16
18 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16
19 N -0.89 -25.04 12.95 55.43 0.72 -24.32 16
20 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16
21 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16
22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.09 1.84 5.89 -51.93 -0.31 1.53 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.09 1.70 5.87 -51.93 -0.30 1.40 16
31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
34 H 0.07 1.21 7.98 -51.93 -0.41 0.80 16
35 H 0.09 2.02 7.82 -51.93 -0.41 1.61 16
36 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16
37 H 0.27 7.17 8.32 -40.82 -0.34 6.83 16
LS Contribution 306.30 15.07 4.62 4.62
Total: -1.00 -29.72 306.30 -5.96 -35.68
By element:
Atomic # 1 Polarization: 6.85 SS G_CDS: -5.60 Total: 1.25 kcal
Atomic # 6 Polarization: 4.61 SS G_CDS: 0.41 Total: 5.02 kcal
Atomic # 7 Polarization: -38.07 SS G_CDS: 0.20 Total: -37.87 kcal
Atomic # 8 Polarization: -20.88 SS G_CDS: -0.61 Total: -21.49 kcal
Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.72 -5.96 -35.68 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000116588127.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.564 kcal
(2) G-P(sol) polarization free energy of solvation -29.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds