Wall clock time and date at job start Mon Mar 30 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47559 * 2 1 4 4 C 1.53004 * 109.47349 * 239.99846 * 2 1 3 5 5 O 1.45204 * 109.47171 * 119.99721 * 2 1 3 6 6 C 1.34641 * 116.99610 * 59.99856 * 5 2 1 7 7 O 1.21505 * 120.00036 * 0.28030 * 6 5 2 8 8 N 1.34775 * 119.99843 * 180.02562 * 6 5 2 9 9 C 1.47427 * 125.64699 * 354.50255 * 8 6 5 10 10 C 1.55135 * 104.71897 * 155.81744 * 9 8 6 11 11 H 1.09003 * 111.22729 * 279.17568 * 10 9 8 12 12 F 1.39901 * 110.90267 * 155.27713 * 10 9 8 13 13 C 1.55153 * 101.48815 * 37.29707 * 10 9 8 14 14 C 1.47025 * 125.65002 * 174.81620 * 8 6 5 15 15 H 1.08998 * 109.88525 * 61.59964 * 14 8 6 16 16 C 1.50707 * 109.87679 * 300.43946 * 14 8 6 17 17 H 1.07999 * 120.00032 * 330.84231 * 16 14 8 18 18 C 1.37876 * 119.99995 * 150.84444 * 16 14 8 19 19 N 1.31517 * 119.99712 * 6.17268 * 18 16 14 20 20 Si 1.86796 * 120.00287 * 186.17496 * 18 16 14 21 21 H 1.48500 * 109.47142 * 59.99636 * 20 18 16 22 22 H 1.48490 * 109.47298 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47193 * 300.00121 * 20 18 16 24 24 H 1.09000 * 109.47256 * 300.00454 * 1 2 3 25 25 H 1.09004 * 109.47137 * 60.00128 * 1 2 3 26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47614 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47313 * 300.00095 * 3 2 1 29 29 H 1.09000 * 109.47207 * 59.99516 * 3 2 1 30 30 H 1.09006 * 109.46758 * 300.00064 * 4 2 1 31 31 H 1.08994 * 109.47018 * 59.99872 * 4 2 1 32 32 H 1.09000 * 109.47004 * 180.02562 * 4 2 1 33 33 H 1.08995 * 110.37299 * 274.74455 * 9 8 6 34 34 H 1.08995 * 110.36484 * 37.07138 * 9 8 6 35 35 H 1.08998 * 110.72582 * 205.97160 * 13 10 9 36 36 H 1.09007 * 110.72278 * 82.69100 * 13 10 9 37 37 H 0.97003 * 120.00064 * 174.96536 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9553 -2.5110 0.5013 8 7 2.0670 -2.6654 2.4172 9 6 3.0073 -2.1773 3.4425 10 6 2.6802 -3.0138 4.7074 11 1 1.8124 -2.6136 5.2317 12 9 3.7881 -3.0852 5.5588 13 6 2.3648 -4.4007 4.0877 14 6 1.6620 -4.0357 2.7631 15 1 1.9724 -4.7237 1.9768 16 6 0.1669 -4.0984 2.9421 17 1 -0.3736 -3.2264 3.2794 18 6 -0.5109 -5.2690 2.6752 19 7 0.1571 -6.3634 2.3823 20 14 -2.3778 -5.3007 2.7295 21 1 -2.9183 -4.3386 1.7358 22 1 -2.8593 -6.6678 2.4068 23 1 -2.8400 -4.9204 4.0886 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2489 33 1 4.0361 -2.3496 3.1266 34 1 2.8413 -1.1175 3.6357 35 1 1.6970 -4.9695 4.7346 36 1 3.2834 -4.9557 3.8965 37 1 -0.3145 -7.2031 2.2663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116588127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:09 Heat of formation + Delta-G solvation = -132.240491 kcal Electronic energy + Delta-G solvation = -20771.389840 eV Core-core repulsion = 17463.261567 eV Total energy + Delta-G solvation = -3308.128274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.12712 -40.02613 -37.71942 -35.55687 -33.63913 -32.62087 -30.17014 -28.33962 -27.19691 -27.08459 -24.75893 -23.14886 -21.14265 -20.02796 -18.71554 -17.20393 -16.93144 -16.02459 -15.73701 -15.40259 -15.02956 -14.45062 -14.16225 -13.91775 -13.63319 -13.43876 -12.88183 -12.53306 -12.41001 -12.31443 -11.91186 -11.73352 -11.60774 -11.56061 -11.44484 -11.02790 -10.92784 -10.87260 -10.65551 -10.40059 -10.09436 -9.89053 -9.77851 -9.43238 -9.17769 -8.51640 -7.73951 -6.11509 -4.17932 2.84588 3.30095 3.34886 3.39941 3.74707 4.35735 4.51596 4.85510 4.99357 5.01330 5.17209 5.22189 5.27131 5.40732 5.54910 5.61939 5.72695 5.83728 5.87243 5.93124 6.01652 6.09382 6.13449 6.16028 6.49538 6.60399 6.68954 6.79024 6.80200 7.04249 7.38123 7.49863 7.81254 8.09390 8.42743 8.88266 9.26993 9.49211 10.94635 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.008911 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.101435 B = 3141.378480 C = 4473.980493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.376 6.376 6 C 0.664 3.336 7 O -0.549 6.549 8 N -0.592 5.592 9 C 0.085 3.915 10 C 0.073 3.927 11 H 0.099 0.901 12 F -0.215 7.215 13 C -0.133 4.133 14 C 0.273 3.727 15 H 0.065 0.935 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.074 3.926 19 N -0.886 5.886 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 11.054 -1.204 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.293 6.293 6 C 0.418 3.582 7 O -0.436 6.436 8 N -0.333 5.333 9 C -0.040 4.040 10 C 0.036 3.964 11 H 0.117 0.883 12 F -0.196 7.196 13 C -0.172 4.172 14 C 0.175 3.825 15 H 0.083 0.917 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.130 4.130 19 N -0.523 5.523 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.178 10.773 -1.696 11.679 hybrid contribution -0.964 -0.014 0.054 0.966 sum 3.214 10.760 -1.642 11.349 Atomic orbital electron populations 1.22506 0.94337 1.05547 1.01622 1.21862 0.94225 0.91138 0.82854 1.21821 1.01856 0.93227 1.02560 1.22505 1.01118 1.03995 0.96306 1.86267 1.72316 1.24974 1.45706 1.17441 0.79222 0.79531 0.82022 1.90876 1.40867 1.69816 1.42056 1.47824 1.46149 1.17448 1.21929 1.22608 0.94157 0.98600 0.88598 1.22851 0.85487 0.99621 0.88446 0.88317 1.92748 1.56559 1.97502 1.72792 1.23393 1.00685 0.93933 0.99159 1.19395 0.94782 0.75922 0.92385 0.91677 1.21096 0.91064 0.97818 1.45489 0.92484 1.24907 0.98733 0.95647 0.93702 1.69880 1.36160 0.99301 1.46933 0.86562 0.85172 0.77191 0.78535 1.19975 1.21172 1.20244 0.92504 0.91886 0.88822 0.91834 0.90689 0.91794 0.89009 0.91807 0.92596 0.91371 0.90686 0.88997 0.91960 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.37 37.15 0.31 -2.58 16 2 C 0.14 2.13 1.13 -90.62 -0.10 2.02 16 3 C -0.14 -1.59 8.85 37.16 0.33 -1.26 16 4 C -0.18 -2.75 8.37 37.16 0.31 -2.44 16 5 O -0.38 -7.10 9.39 -40.33 -0.38 -7.48 16 6 C 0.66 14.83 7.65 54.05 0.41 15.24 16 7 O -0.55 -13.78 11.77 -19.28 -0.23 -14.01 16 8 N -0.59 -13.03 3.07 -169.92 -0.52 -13.55 16 9 C 0.09 1.52 6.77 -2.41 -0.02 1.51 16 10 C 0.07 1.31 4.87 -24.46 -0.12 1.19 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 12 F -0.22 -3.76 17.23 2.25 0.04 -3.72 16 13 C -0.13 -2.78 6.29 -24.90 -0.16 -2.93 16 14 C 0.27 6.69 2.83 -68.10 -0.19 6.50 16 15 H 0.07 1.82 7.58 -51.93 -0.39 1.43 16 16 C -0.52 -13.90 7.73 -34.44 -0.27 -14.17 16 17 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 18 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 19 N -0.89 -25.04 12.95 55.43 0.72 -24.32 16 20 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.84 5.89 -51.93 -0.31 1.53 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.70 5.87 -51.93 -0.30 1.40 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.21 7.98 -51.93 -0.41 0.80 16 35 H 0.09 2.02 7.82 -51.93 -0.41 1.61 16 36 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.27 7.17 8.32 -40.82 -0.34 6.83 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -29.72 306.30 -5.96 -35.68 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.60 Total: 1.25 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 0.41 Total: 5.02 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.20 Total: -37.87 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.61 Total: -21.49 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.72 -5.96 -35.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116588127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.564 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds