Wall clock time and date at job start Mon Mar 30 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47559 * 2 1 4 4 C 1.53004 * 109.47349 * 239.99846 * 2 1 3 5 5 O 1.45204 * 109.47171 * 119.99721 * 2 1 3 6 6 C 1.34641 * 116.99610 * 59.99856 * 5 2 1 7 7 O 1.21505 * 120.00036 * 0.28030 * 6 5 2 8 8 N 1.34775 * 119.99843 * 180.02562 * 6 5 2 9 9 C 1.47427 * 125.64699 * 354.50255 * 8 6 5 10 10 C 1.55135 * 104.71897 * 155.81744 * 9 8 6 11 11 H 1.09003 * 111.22729 * 279.17568 * 10 9 8 12 12 F 1.39901 * 110.90267 * 155.27713 * 10 9 8 13 13 C 1.55153 * 101.48815 * 37.29707 * 10 9 8 14 14 C 1.47025 * 125.65002 * 174.81620 * 8 6 5 15 15 H 1.08998 * 109.88525 * 61.59964 * 14 8 6 16 16 C 1.50707 * 109.87679 * 300.43946 * 14 8 6 17 17 H 1.07999 * 120.00032 * 330.84231 * 16 14 8 18 18 C 1.37876 * 119.99995 * 150.84444 * 16 14 8 19 19 N 1.31517 * 119.99712 * 6.17268 * 18 16 14 20 20 Si 1.86796 * 120.00287 * 186.17496 * 18 16 14 21 21 H 1.48500 * 109.47142 * 59.99636 * 20 18 16 22 22 H 1.48490 * 109.47298 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47193 * 300.00121 * 20 18 16 24 24 H 1.09000 * 109.47256 * 300.00454 * 1 2 3 25 25 H 1.09004 * 109.47137 * 60.00128 * 1 2 3 26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47614 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47313 * 300.00095 * 3 2 1 29 29 H 1.09000 * 109.47207 * 59.99516 * 3 2 1 30 30 H 1.09006 * 109.46758 * 300.00064 * 4 2 1 31 31 H 1.08994 * 109.47018 * 59.99872 * 4 2 1 32 32 H 1.09000 * 109.47004 * 180.02562 * 4 2 1 33 33 H 1.08995 * 110.37299 * 274.74455 * 9 8 6 34 34 H 1.08995 * 110.36484 * 37.07138 * 9 8 6 35 35 H 1.08998 * 110.72582 * 205.97160 * 13 10 9 36 36 H 1.09007 * 110.72278 * 82.69100 * 13 10 9 37 37 H 0.97003 * 120.00064 * 174.96536 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9553 -2.5110 0.5013 8 7 2.0670 -2.6654 2.4172 9 6 3.0073 -2.1773 3.4425 10 6 2.6802 -3.0138 4.7074 11 1 1.8124 -2.6136 5.2317 12 9 3.7881 -3.0852 5.5588 13 6 2.3648 -4.4007 4.0877 14 6 1.6620 -4.0357 2.7631 15 1 1.9724 -4.7237 1.9768 16 6 0.1669 -4.0984 2.9421 17 1 -0.3736 -3.2264 3.2794 18 6 -0.5109 -5.2690 2.6752 19 7 0.1571 -6.3634 2.3823 20 14 -2.3778 -5.3007 2.7295 21 1 -2.9183 -4.3386 1.7358 22 1 -2.8593 -6.6678 2.4068 23 1 -2.8400 -4.9204 4.0886 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2489 33 1 4.0361 -2.3496 3.1266 34 1 2.8413 -1.1175 3.6357 35 1 1.6970 -4.9695 4.7346 36 1 3.2834 -4.9557 3.8965 37 1 -0.3145 -7.2031 2.2663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116588127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:09 Heat of formation + Delta-G solvation = -150.083210 kcal Electronic energy + Delta-G solvation = -20772.163559 eV Core-core repulsion = 17463.261567 eV Total energy + Delta-G solvation = -3308.901992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.57047 -41.61445 -39.32695 -37.21788 -35.12822 -34.54317 -31.84790 -30.12720 -28.32266 -28.22574 -26.67268 -24.83555 -22.62307 -21.68620 -20.26961 -18.90818 -18.74813 -17.62608 -17.32612 -16.94742 -16.62710 -16.24244 -15.59304 -15.29978 -15.14311 -14.80885 -14.56724 -14.09049 -14.05943 -13.64104 -13.32376 -13.18605 -13.01360 -12.86518 -12.80846 -12.77872 -12.54484 -12.42603 -12.23322 -12.14703 -11.71778 -11.59733 -11.32756 -11.25143 -10.86971 -10.58662 -9.54771 -8.19858 -6.32069 1.26916 1.36966 1.41818 1.46748 2.02602 2.37876 2.95769 3.18533 3.37750 3.69296 3.83912 3.86311 3.89163 4.01149 4.05758 4.50378 4.53499 4.60092 4.64241 4.73675 4.79296 4.82524 4.86185 4.92896 5.07845 5.16196 5.20540 5.32842 5.34872 5.42301 5.57167 5.63881 5.75620 6.08988 6.59181 6.87412 7.35014 7.59289 8.85708 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.008911 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.101435 B = 3141.378480 C = 4473.980493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 C -0.128 4.128 4 C -0.178 4.178 5 O -0.370 6.370 6 C 0.660 3.340 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.086 3.914 10 C 0.090 3.910 11 H 0.111 0.889 12 F -0.207 7.207 13 C -0.127 4.127 14 C 0.277 3.723 15 H 0.019 0.981 16 C -0.523 4.523 17 H 0.048 0.952 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.952 3.048 21 H -0.286 1.286 22 H -0.279 1.279 23 H -0.260 1.260 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.838 13.480 -0.764 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.084 3.916 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.286 6.286 6 C 0.415 3.585 7 O -0.476 6.476 8 N -0.342 5.342 9 C -0.037 4.037 10 C 0.054 3.946 11 H 0.129 0.871 12 F -0.188 7.188 13 C -0.166 4.166 14 C 0.177 3.823 15 H 0.037 0.963 16 C -0.562 4.562 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.554 5.554 20 Si 0.778 3.222 21 H -0.212 1.212 22 H -0.204 1.204 23 H -0.185 1.185 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.596 13.234 -1.231 14.063 hybrid contribution -1.040 -0.701 -0.164 1.265 sum 3.556 12.533 -1.395 13.102 Atomic orbital electron populations 1.22456 0.94773 1.03066 1.03378 1.22420 0.94238 0.93142 0.81761 1.21838 1.02427 0.89884 1.04357 1.22449 1.01551 1.01869 0.97637 1.86274 1.72052 1.22847 1.47396 1.17600 0.78749 0.80505 0.81607 1.90868 1.42395 1.70931 1.43377 1.47719 1.46830 1.16844 1.22856 1.22814 0.93935 0.99790 0.87157 1.22642 0.86099 0.97223 0.88668 0.87126 1.92771 1.56195 1.97351 1.72440 1.23162 1.00251 0.95891 0.97279 1.19113 0.94027 0.76626 0.92579 0.96252 1.21293 0.92489 0.97308 1.45095 0.93407 1.25615 1.02625 0.95513 0.93769 1.69980 1.37512 0.99693 1.48236 0.85700 0.80587 0.77061 0.78859 1.21171 1.20443 1.18495 0.92176 0.88701 0.93285 0.90951 0.87683 0.91200 0.93166 0.88719 0.91804 0.89803 0.88175 0.90254 0.91312 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.49 8.37 71.98 0.60 -4.89 16 2 C 0.12 3.55 1.13 -10.80 -0.01 3.53 16 3 C -0.13 -2.46 8.85 71.98 0.64 -1.83 16 4 C -0.18 -5.18 8.37 71.98 0.60 -4.58 16 5 O -0.37 -13.56 9.39 -55.50 -0.52 -14.08 16 6 C 0.66 29.89 7.65 129.79 0.99 30.88 16 7 O -0.59 -30.68 11.77 19.82 0.23 -30.45 16 8 N -0.60 -26.54 3.07 -921.92 -2.83 -29.37 16 9 C 0.09 2.92 6.77 86.93 0.59 3.51 16 10 C 0.09 3.08 4.87 32.06 0.16 3.23 16 11 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 12 F -0.21 -6.66 17.23 44.97 0.78 -5.88 16 13 C -0.13 -5.31 6.29 31.78 0.20 -5.11 16 14 C 0.28 13.90 2.83 44.60 0.13 14.02 16 15 H 0.02 1.15 7.58 -2.39 -0.02 1.13 16 16 C -0.52 -28.89 7.73 25.60 0.20 -28.69 16 17 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 18 C 0.03 1.44 5.45 84.65 0.46 1.90 16 19 N -0.92 -53.42 12.95 21.45 0.28 -53.14 16 20 Si 0.95 44.92 29.55 68.60 2.03 46.95 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.96 5.89 -2.39 -0.01 1.95 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.91 5.87 -2.38 -0.01 1.89 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.10 2.92 7.98 -2.39 -0.02 2.90 16 35 H 0.08 3.52 7.82 -2.39 -0.02 3.50 16 36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.27 14.77 8.32 -92.71 -0.77 14.00 16 Total: -1.00 -67.03 306.30 5.56 -61.46 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.05 Total: 12.53 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 4.55 Total: 11.98 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.55 Total: -82.51 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.29 Total: -44.53 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.78 Total: -5.88 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.03 5.56 -61.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116588127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.622 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds