Wall clock time and date at job start Mon Mar 30 2020 04:16:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52988 * 1
3 3 C 1.52998 * 109.47559 * 2 1
4 4 C 1.53004 * 109.47349 * 239.99846 * 2 1 3
5 5 O 1.45204 * 109.47171 * 119.99721 * 2 1 3
6 6 C 1.34641 * 116.99610 * 59.99856 * 5 2 1
7 7 O 1.21505 * 120.00036 * 0.28030 * 6 5 2
8 8 N 1.34775 * 119.99843 * 180.02562 * 6 5 2
9 9 C 1.47427 * 125.64699 * 354.50255 * 8 6 5
10 10 C 1.55135 * 104.71897 * 155.81744 * 9 8 6
11 11 H 1.09003 * 111.22729 * 279.17568 * 10 9 8
12 12 F 1.39901 * 110.90267 * 155.27713 * 10 9 8
13 13 C 1.55153 * 101.48815 * 37.29707 * 10 9 8
14 14 C 1.47025 * 125.65002 * 174.81620 * 8 6 5
15 15 H 1.08998 * 109.88525 * 61.59964 * 14 8 6
16 16 C 1.50707 * 109.87679 * 300.43946 * 14 8 6
17 17 H 1.07999 * 120.00032 * 330.84231 * 16 14 8
18 18 C 1.37876 * 119.99995 * 150.84444 * 16 14 8
19 19 N 1.31517 * 119.99712 * 6.17268 * 18 16 14
20 20 Si 1.86796 * 120.00287 * 186.17496 * 18 16 14
21 21 H 1.48500 * 109.47142 * 59.99636 * 20 18 16
22 22 H 1.48490 * 109.47298 * 179.97438 * 20 18 16
23 23 H 1.48504 * 109.47193 * 300.00121 * 20 18 16
24 24 H 1.09000 * 109.47256 * 300.00454 * 1 2 3
25 25 H 1.09004 * 109.47137 * 60.00128 * 1 2 3
26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.47614 * 179.97438 * 3 2 1
28 28 H 1.09002 * 109.47313 * 300.00095 * 3 2 1
29 29 H 1.09000 * 109.47207 * 59.99516 * 3 2 1
30 30 H 1.09006 * 109.46758 * 300.00064 * 4 2 1
31 31 H 1.08994 * 109.47018 * 59.99872 * 4 2 1
32 32 H 1.09000 * 109.47004 * 180.02562 * 4 2 1
33 33 H 1.08995 * 110.37299 * 274.74455 * 9 8 6
34 34 H 1.08995 * 110.36484 * 37.07138 * 9 8 6
35 35 H 1.08998 * 110.72582 * 205.97160 * 13 10 9
36 36 H 1.09007 * 110.72278 * 82.69100 * 13 10 9
37 37 H 0.97003 * 120.00064 * 174.96536 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0139 -0.6844 1.1856
6 6 1.6521 -1.9723 1.3384
7 8 0.9553 -2.5110 0.5013
8 7 2.0670 -2.6654 2.4172
9 6 3.0073 -2.1773 3.4425
10 6 2.6802 -3.0138 4.7074
11 1 1.8124 -2.6136 5.2317
12 9 3.7881 -3.0852 5.5588
13 6 2.3648 -4.4007 4.0877
14 6 1.6620 -4.0357 2.7631
15 1 1.9724 -4.7237 1.9768
16 6 0.1669 -4.0984 2.9421
17 1 -0.3736 -3.2264 3.2794
18 6 -0.5109 -5.2690 2.6752
19 7 0.1571 -6.3634 2.3823
20 14 -2.3778 -5.3007 2.7295
21 1 -2.9183 -4.3386 1.7358
22 1 -2.8593 -6.6678 2.4068
23 1 -2.8400 -4.9204 4.0886
24 1 -0.3634 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3634 -1.0276 -0.0005
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6766 1.9563 0.8899
30 1 1.6766 -1.7490 -1.2492
31 1 1.6766 -0.2075 -2.1392
32 1 3.1299 -0.7217 -1.2489
33 1 4.0361 -2.3496 3.1266
34 1 2.8413 -1.1175 3.6357
35 1 1.6970 -4.9695 4.7346
36 1 3.2834 -4.9557 3.8965
37 1 -0.3145 -7.2031 2.2663
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000116588127.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:16:09
Heat of formation + Delta-G solvation = -150.083210 kcal
Electronic energy + Delta-G solvation = -20772.163559 eV
Core-core repulsion = 17463.261567 eV
Total energy + Delta-G solvation = -3308.901992 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.57047 -41.61445 -39.32695 -37.21788 -35.12822 -34.54317 -31.84790 -30.12720
-28.32266 -28.22574 -26.67268 -24.83555 -22.62307 -21.68620 -20.26961 -18.90818
-18.74813 -17.62608 -17.32612 -16.94742 -16.62710 -16.24244 -15.59304 -15.29978
-15.14311 -14.80885 -14.56724 -14.09049 -14.05943 -13.64104 -13.32376 -13.18605
-13.01360 -12.86518 -12.80846 -12.77872 -12.54484 -12.42603 -12.23322 -12.14703
-11.71778 -11.59733 -11.32756 -11.25143 -10.86971 -10.58662 -9.54771 -8.19858
-6.32069 1.26916 1.36966 1.41818 1.46748 2.02602 2.37876 2.95769
3.18533 3.37750 3.69296 3.83912 3.86311 3.89163 4.01149 4.05758
4.50378 4.53499 4.60092 4.64241 4.73675 4.79296 4.82524 4.86185
4.92896 5.07845 5.16196 5.20540 5.32842 5.34872 5.42301 5.57167
5.63881 5.75620 6.08988 6.59181 6.87412 7.35014 7.59289 8.85708
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.015372 B = 0.008911 C = 0.006257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1821.101435 B = 3141.378480 C = 4473.980493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.121 3.879
3 C -0.128 4.128
4 C -0.178 4.178
5 O -0.370 6.370
6 C 0.660 3.340
7 O -0.586 6.586
8 N -0.601 5.601
9 C 0.086 3.914
10 C 0.090 3.910
11 H 0.111 0.889
12 F -0.207 7.207
13 C -0.127 4.127
14 C 0.277 3.723
15 H 0.019 0.981
16 C -0.523 4.523
17 H 0.048 0.952
18 C 0.026 3.974
19 N -0.916 5.916
20 Si 0.952 3.048
21 H -0.286 1.286
22 H -0.279 1.279
23 H -0.260 1.260
24 H 0.059 0.941
25 H 0.094 0.906
26 H 0.048 0.952
27 H 0.071 0.929
28 H 0.105 0.895
29 H 0.069 0.931
30 H 0.049 0.951
31 H 0.094 0.906
32 H 0.063 0.937
33 H 0.084 0.916
34 H 0.100 0.900
35 H 0.079 0.921
36 H 0.068 0.932
37 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.838 13.480 -0.764 14.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.084 3.916
3 C -0.185 4.185
4 C -0.235 4.235
5 O -0.286 6.286
6 C 0.415 3.585
7 O -0.476 6.476
8 N -0.342 5.342
9 C -0.037 4.037
10 C 0.054 3.946
11 H 0.129 0.871
12 F -0.188 7.188
13 C -0.166 4.166
14 C 0.177 3.823
15 H 0.037 0.963
16 C -0.562 4.562
17 H 0.066 0.934
18 C -0.175 4.175
19 N -0.554 5.554
20 Si 0.778 3.222
21 H -0.212 1.212
22 H -0.204 1.204
23 H -0.185 1.185
24 H 0.078 0.922
25 H 0.113 0.887
26 H 0.067 0.933
27 H 0.090 0.910
28 H 0.123 0.877
29 H 0.088 0.912
30 H 0.068 0.932
31 H 0.113 0.887
32 H 0.082 0.918
33 H 0.102 0.898
34 H 0.118 0.882
35 H 0.097 0.903
36 H 0.087 0.913
37 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 4.596 13.234 -1.231 14.063
hybrid contribution -1.040 -0.701 -0.164 1.265
sum 3.556 12.533 -1.395 13.102
Atomic orbital electron populations
1.22456 0.94773 1.03066 1.03378 1.22420 0.94238 0.93142 0.81761
1.21838 1.02427 0.89884 1.04357 1.22449 1.01551 1.01869 0.97637
1.86274 1.72052 1.22847 1.47396 1.17600 0.78749 0.80505 0.81607
1.90868 1.42395 1.70931 1.43377 1.47719 1.46830 1.16844 1.22856
1.22814 0.93935 0.99790 0.87157 1.22642 0.86099 0.97223 0.88668
0.87126 1.92771 1.56195 1.97351 1.72440 1.23162 1.00251 0.95891
0.97279 1.19113 0.94027 0.76626 0.92579 0.96252 1.21293 0.92489
0.97308 1.45095 0.93407 1.25615 1.02625 0.95513 0.93769 1.69980
1.37512 0.99693 1.48236 0.85700 0.80587 0.77061 0.78859 1.21171
1.20443 1.18495 0.92176 0.88701 0.93285 0.90951 0.87683 0.91200
0.93166 0.88719 0.91804 0.89803 0.88175 0.90254 0.91312 0.92434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.49 8.37 71.98 0.60 -4.89 16
2 C 0.12 3.55 1.13 -10.80 -0.01 3.53 16
3 C -0.13 -2.46 8.85 71.98 0.64 -1.83 16
4 C -0.18 -5.18 8.37 71.98 0.60 -4.58 16
5 O -0.37 -13.56 9.39 -55.50 -0.52 -14.08 16
6 C 0.66 29.89 7.65 129.79 0.99 30.88 16
7 O -0.59 -30.68 11.77 19.82 0.23 -30.45 16
8 N -0.60 -26.54 3.07 -921.92 -2.83 -29.37 16
9 C 0.09 2.92 6.77 86.93 0.59 3.51 16
10 C 0.09 3.08 4.87 32.06 0.16 3.23 16
11 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16
12 F -0.21 -6.66 17.23 44.97 0.78 -5.88 16
13 C -0.13 -5.31 6.29 31.78 0.20 -5.11 16
14 C 0.28 13.90 2.83 44.60 0.13 14.02 16
15 H 0.02 1.15 7.58 -2.39 -0.02 1.13 16
16 C -0.52 -28.89 7.73 25.60 0.20 -28.69 16
17 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16
18 C 0.03 1.44 5.45 84.65 0.46 1.90 16
19 N -0.92 -53.42 12.95 21.45 0.28 -53.14 16
20 Si 0.95 44.92 29.55 68.60 2.03 46.95 16
21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16
22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
26 H 0.05 1.96 5.89 -2.39 -0.01 1.95 16
27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.05 1.91 5.87 -2.38 -0.01 1.89 16
31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
34 H 0.10 2.92 7.98 -2.39 -0.02 2.90 16
35 H 0.08 3.52 7.82 -2.39 -0.02 3.50 16
36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16
37 H 0.27 14.77 8.32 -92.71 -0.77 14.00 16
Total: -1.00 -67.03 306.30 5.56 -61.46
By element:
Atomic # 1 Polarization: 11.48 SS G_CDS: 1.05 Total: 12.53 kcal
Atomic # 6 Polarization: 7.43 SS G_CDS: 4.55 Total: 11.98 kcal
Atomic # 7 Polarization: -79.96 SS G_CDS: -2.55 Total: -82.51 kcal
Atomic # 8 Polarization: -44.24 SS G_CDS: -0.29 Total: -44.53 kcal
Atomic # 9 Polarization: -6.66 SS G_CDS: 0.78 Total: -5.88 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal
Total: -67.03 5.56 -61.46 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000116588127.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -88.622 kcal
(2) G-P(sol) polarization free energy of solvation -67.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.647 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds