Wall clock time and date at job start Mon Mar 30 2020 04:20:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.81401 * 103.00177 * 2 1
4 4 C 1.52995 * 109.47456 * 180.02562 * 3 2 1
5 5 C 1.53005 * 109.47301 * 54.99820 * 4 3 2
6 6 O 1.42902 * 109.46923 * 294.99919 * 4 3 2
7 7 C 1.52997 * 109.47612 * 174.99988 * 4 3 2
8 8 N 1.46899 * 109.47691 * 174.48865 * 7 4 3
9 9 C 1.46893 * 111.00147 * 184.42943 * 8 7 4
10 10 C 1.53002 * 109.47023 * 185.33295 * 9 8 7
11 11 C 1.50702 * 115.55088 * 294.57397 * 10 9 8
12 12 H 1.07998 * 119.99628 * 95.51830 * 11 10 9
13 13 C 1.37878 * 119.99926 * 275.24780 * 11 10 9
14 14 N 1.31506 * 120.00439 * 355.51755 * 13 11 10
15 15 Si 1.86803 * 119.99797 * 175.51685 * 13 11 10
16 16 H 1.48504 * 109.46920 * 89.99621 * 15 13 11
17 17 H 1.48496 * 109.47176 * 209.99856 * 15 13 11
18 18 H 1.48501 * 109.47102 * 330.00108 * 15 13 11
19 19 C 1.53001 * 117.50056 * 80.24704 * 10 9 8
20 20 C 1.53002 * 117.50050 * 148.90850 * 10 9 8
21 21 H 1.09000 * 109.47081 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.46867 * 300.00124 * 1 2 3
23 23 H 1.09001 * 109.46784 * 59.99983 * 1 2 3
24 24 H 1.08999 * 109.47222 * 59.99651 * 3 2 1
25 25 H 1.09008 * 109.47033 * 299.99969 * 3 2 1
26 26 H 1.09005 * 109.47082 * 184.22316 * 5 4 3
27 27 H 1.08998 * 109.47005 * 304.22083 * 5 4 3
28 28 H 1.08992 * 109.47070 * 64.21998 * 5 4 3
29 29 H 0.96702 * 114.00042 * 299.99902 * 6 4 3
30 30 H 1.09008 * 109.47038 * 54.48453 * 7 4 3
31 31 H 1.08999 * 109.46937 * 294.49590 * 7 4 3
32 32 H 1.00903 * 110.99665 * 308.38313 * 8 7 4
33 33 H 1.09000 * 109.47607 * 65.33074 * 9 8 7
34 34 H 1.08999 * 109.47427 * 305.33002 * 9 8 7
35 35 H 0.96998 * 120.00456 * 185.00612 * 14 13 11
36 36 H 1.08998 * 117.49952 * 214.99843 * 19 10 9
37 37 H 1.09003 * 117.49682 * 0.02562 * 19 10 9
38 38 H 1.09005 * 117.49733 * 359.97438 * 20 10 9
39 39 H 1.08993 * 117.50248 * 144.96894 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 3.7423 1.9400 -0.0006
5 6 4.3419 1.1754 -1.1826
6 8 4.2803 1.4278 1.2202
7 6 4.0871 3.4253 -0.1264
8 7 5.5392 3.6038 0.0053
9 6 5.8976 5.0283 -0.0053
10 6 7.4209 5.1710 -0.0004
11 6 8.1159 4.6791 1.2430
12 1 8.5248 3.6800 1.2736
13 6 8.2346 5.5066 2.3395
14 7 7.8207 6.7529 2.2707
15 14 8.9835 4.8572 3.9228
16 1 10.4513 5.0825 3.9050
17 1 8.3873 5.5699 5.0811
18 1 8.7074 3.4029 4.0410
19 6 8.1511 4.9968 -1.3337
20 6 8.0188 6.3881 -0.7092
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8031 2.2371 0.8899
25 1 1.8031 2.2371 -0.8901
26 1 5.4294 1.2359 -1.1404
27 1 4.0339 0.1310 -1.1336
28 1 3.9895 1.6147 -2.1158
29 1 3.9436 1.8670 2.0132
30 1 3.5795 3.9840 0.6601
31 1 3.7626 3.7924 -1.1000
32 1 5.8853 3.1501 0.8375
33 1 5.4844 5.5136 0.8790
34 1 5.4915 5.4985 -0.9008
35 1 7.9697 7.3553 3.0162
36 1 9.1341 4.5263 -1.3114
37 1 7.5461 4.7809 -2.2143
38 1 7.3268 7.0869 -1.1793
39 1 8.9144 6.8332 -0.2760
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230169359.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:20:08
Heat of formation + Delta-G solvation = -33.954689 kcal
Electronic energy + Delta-G solvation = -17854.567895 eV
Core-core repulsion = 15116.914789 eV
Total energy + Delta-G solvation = -2737.653106 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.53277 -36.65328 -33.75262 -31.98804 -31.80430 -29.25899 -27.27086 -26.58336
-25.23855 -22.87863 -20.88607 -20.30907 -19.00388 -16.97964 -16.05990 -15.58807
-15.49263 -15.13267 -14.60520 -14.36100 -13.97663 -13.74682 -13.70005 -13.39104
-12.79548 -12.45128 -12.19666 -11.96393 -11.70752 -11.58609 -11.41082 -11.23852
-10.93089 -10.87780 -10.77969 -10.41651 -10.07325 -9.99273 -9.82317 -9.25076
-8.81500 -8.36292 -8.02519 -7.71767 -7.48809 -5.98748 -4.05745 1.52555
2.48302 3.30407 3.37689 3.42457 4.29220 4.42900 4.53518 4.82142
4.91281 4.93433 5.11003 5.18671 5.29095 5.32576 5.44644 5.47614
5.68233 5.87490 5.95734 6.14940 6.20582 6.24072 6.49991 6.58735
6.60383 6.84338 6.87243 6.95449 7.23369 7.53214 7.63447 7.80457
7.91815 7.98783 8.32042 8.53986 8.98316 9.60084 11.08323
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.025999 B = 0.004826 C = 0.004379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.704775 B = 5799.997629 C = 6393.345151
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 S -0.229 6.229
3 C -0.116 4.116
4 C 0.152 3.848
5 C -0.130 4.130
6 O -0.542 6.542
7 C 0.038 3.962
8 N -0.671 5.671
9 C 0.106 3.894
10 C 0.048 3.952
11 C -0.490 4.490
12 H 0.060 0.940
13 C 0.069 3.931
14 N -0.882 5.882
15 Si 0.886 3.114
16 H -0.281 1.281
17 H -0.288 1.288
18 H -0.271 1.271
19 C -0.200 4.200
20 C -0.157 4.157
21 H 0.098 0.902
22 H 0.072 0.928
23 H 0.073 0.927
24 H 0.080 0.920
25 H 0.088 0.912
26 H 0.081 0.919
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.372 0.628
30 H 0.021 0.979
31 H 0.071 0.929
32 H 0.355 0.645
33 H 0.029 0.971
34 H 0.037 0.963
35 H 0.258 0.742
36 H 0.072 0.928
37 H 0.063 0.937
38 H 0.057 0.943
39 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.529 -8.346 -4.345 16.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.305 4.305
2 S -0.003 6.003
3 C -0.266 4.266
4 C 0.109 3.891
5 C -0.187 4.187
6 O -0.347 6.347
7 C -0.094 4.094
8 N -0.304 5.304
9 C -0.023 4.023
10 C 0.047 3.953
11 C -0.528 4.528
12 H 0.078 0.922
13 C -0.134 4.134
14 N -0.519 5.519
15 Si 0.714 3.286
16 H -0.208 1.208
17 H -0.214 1.214
18 H -0.196 1.196
19 C -0.238 4.238
20 C -0.195 4.195
21 H 0.117 0.883
22 H 0.091 0.909
23 H 0.092 0.908
24 H 0.098 0.902
25 H 0.106 0.894
26 H 0.100 0.900
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.218 0.782
30 H 0.039 0.961
31 H 0.089 0.911
32 H 0.176 0.824
33 H 0.047 0.953
34 H 0.055 0.945
35 H 0.068 0.932
36 H 0.091 0.909
37 H 0.082 0.918
38 H 0.076 0.924
39 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -12.519 -9.556 -5.282 16.611
hybrid contribution -1.219 1.716 2.174 3.026
sum -13.737 -7.840 -3.108 16.119
Atomic orbital electron populations
1.23455 0.96293 1.06208 1.04539 1.87141 1.04828 1.10414 1.97892
1.24308 1.01708 0.95351 1.05195 1.20984 0.87354 0.93648 0.87076
1.21658 1.03197 0.99432 0.94437 1.86648 1.69942 1.63226 1.14854
1.22544 0.92161 0.93892 1.00797 1.60362 1.08060 1.14897 1.47078
1.21457 0.97010 0.86197 0.97596 1.18720 0.89219 0.97131 0.90201
1.20488 1.36491 0.99830 0.95957 0.92157 1.24999 0.95061 0.94948
0.98364 1.70007 1.45925 1.04293 1.31696 0.86685 0.79304 0.79284
0.83355 1.20758 1.21416 1.19622 1.22863 1.01469 1.01393 0.98026
1.22504 1.02813 0.90019 1.04175 0.88301 0.90865 0.90820 0.90168
0.89373 0.90045 0.91796 0.91682 0.78150 0.96068 0.91074 0.82441
0.95298 0.94468 0.93218 0.90939 0.91797 0.92444 0.90040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.10 10.76 101.05 1.09 -0.01 16
2 S -0.23 -2.63 20.34 -107.50 -2.19 -4.82 16
3 C -0.12 -1.28 5.16 37.15 0.19 -1.09 16
4 C 0.15 2.03 0.84 -90.62 -0.08 1.96 16
5 C -0.13 -1.81 8.46 37.16 0.31 -1.50 16
6 O -0.54 -7.99 11.79 -35.23 -0.42 -8.40 16
7 C 0.04 0.58 4.83 -3.83 -0.02 0.56 16
8 N -0.67 -12.80 6.05 -113.78 -0.69 -13.49 16
9 C 0.11 2.34 5.54 -3.83 -0.02 2.31 16
10 C 0.05 1.18 1.64 -155.66 -0.26 0.92 16
11 C -0.49 -13.15 8.34 -34.44 -0.29 -13.44 16
12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16
13 C 0.07 1.86 5.43 -17.82 -0.10 1.77 16
14 N -0.88 -24.75 12.67 55.43 0.70 -24.05 16
15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16
16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
19 C -0.20 -4.53 9.96 -26.69 -0.27 -4.79 16
20 C -0.16 -3.77 9.16 -26.69 -0.24 -4.02 16
21 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16
22 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16
23 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16
24 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16
25 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16
26 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16
27 H 0.06 0.88 6.54 -51.93 -0.34 0.55 16
28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
29 H 0.37 4.45 9.05 45.56 0.41 4.86 16
30 H 0.02 0.32 8.13 -51.92 -0.42 -0.11 16
31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
32 H 0.35 7.33 7.41 -39.29 -0.29 7.04 16
33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
34 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16
35 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16
36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16
37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16
38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16
39 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16
LS Contribution 332.78 15.07 5.01 5.01
Total: -1.00 -28.67 332.78 -8.36 -37.03
By element:
Atomic # 1 Polarization: 16.19 SS G_CDS: -6.09 Total: 10.10 kcal
Atomic # 6 Polarization: -17.66 SS G_CDS: 0.33 Total: -17.33 kcal
Atomic # 7 Polarization: -37.56 SS G_CDS: 0.01 Total: -37.55 kcal
Atomic # 8 Polarization: -7.99 SS G_CDS: -0.42 Total: -8.40 kcal
Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal
Atomic # 16 Polarization: -2.63 SS G_CDS: -2.19 Total: -4.82 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -28.67 -8.36 -37.03 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230169359.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.077 kcal
(2) G-P(sol) polarization free energy of solvation -28.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.955 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds