Wall clock time and date at job start Mon Mar 30 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00177 * 2 1 4 4 C 1.52995 * 109.47456 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47301 * 54.99820 * 4 3 2 6 6 O 1.42902 * 109.46923 * 294.99919 * 4 3 2 7 7 C 1.52997 * 109.47612 * 174.99988 * 4 3 2 8 8 N 1.46899 * 109.47691 * 174.48865 * 7 4 3 9 9 C 1.46893 * 111.00147 * 184.42943 * 8 7 4 10 10 C 1.53002 * 109.47023 * 185.33295 * 9 8 7 11 11 C 1.50702 * 115.55088 * 294.57397 * 10 9 8 12 12 H 1.07998 * 119.99628 * 95.51830 * 11 10 9 13 13 C 1.37878 * 119.99926 * 275.24780 * 11 10 9 14 14 N 1.31506 * 120.00439 * 355.51755 * 13 11 10 15 15 Si 1.86803 * 119.99797 * 175.51685 * 13 11 10 16 16 H 1.48504 * 109.46920 * 89.99621 * 15 13 11 17 17 H 1.48496 * 109.47176 * 209.99856 * 15 13 11 18 18 H 1.48501 * 109.47102 * 330.00108 * 15 13 11 19 19 C 1.53001 * 117.50056 * 80.24704 * 10 9 8 20 20 C 1.53002 * 117.50050 * 148.90850 * 10 9 8 21 21 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46867 * 300.00124 * 1 2 3 23 23 H 1.09001 * 109.46784 * 59.99983 * 1 2 3 24 24 H 1.08999 * 109.47222 * 59.99651 * 3 2 1 25 25 H 1.09008 * 109.47033 * 299.99969 * 3 2 1 26 26 H 1.09005 * 109.47082 * 184.22316 * 5 4 3 27 27 H 1.08998 * 109.47005 * 304.22083 * 5 4 3 28 28 H 1.08992 * 109.47070 * 64.21998 * 5 4 3 29 29 H 0.96702 * 114.00042 * 299.99902 * 6 4 3 30 30 H 1.09008 * 109.47038 * 54.48453 * 7 4 3 31 31 H 1.08999 * 109.46937 * 294.49590 * 7 4 3 32 32 H 1.00903 * 110.99665 * 308.38313 * 8 7 4 33 33 H 1.09000 * 109.47607 * 65.33074 * 9 8 7 34 34 H 1.08999 * 109.47427 * 305.33002 * 9 8 7 35 35 H 0.96998 * 120.00456 * 185.00612 * 14 13 11 36 36 H 1.08998 * 117.49952 * 214.99843 * 19 10 9 37 37 H 1.09003 * 117.49682 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49733 * 359.97438 * 20 10 9 39 39 H 1.08993 * 117.50248 * 144.96894 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.3419 1.1754 -1.1826 6 8 4.2803 1.4278 1.2202 7 6 4.0871 3.4253 -0.1264 8 7 5.5392 3.6038 0.0053 9 6 5.8976 5.0283 -0.0053 10 6 7.4209 5.1710 -0.0004 11 6 8.1159 4.6791 1.2430 12 1 8.5248 3.6800 1.2736 13 6 8.2346 5.5066 2.3395 14 7 7.8207 6.7529 2.2707 15 14 8.9835 4.8572 3.9228 16 1 10.4513 5.0825 3.9050 17 1 8.3873 5.5699 5.0811 18 1 8.7074 3.4029 4.0410 19 6 8.1511 4.9968 -1.3337 20 6 8.0188 6.3881 -0.7092 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8031 2.2371 0.8899 25 1 1.8031 2.2371 -0.8901 26 1 5.4294 1.2359 -1.1404 27 1 4.0339 0.1310 -1.1336 28 1 3.9895 1.6147 -2.1158 29 1 3.9436 1.8670 2.0132 30 1 3.5795 3.9840 0.6601 31 1 3.7626 3.7924 -1.1000 32 1 5.8853 3.1501 0.8375 33 1 5.4844 5.5136 0.8790 34 1 5.4915 5.4985 -0.9008 35 1 7.9697 7.3553 3.0162 36 1 9.1341 4.5263 -1.3114 37 1 7.5461 4.7809 -2.2143 38 1 7.3268 7.0869 -1.1793 39 1 8.9144 6.8332 -0.2760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230169359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:08 Heat of formation + Delta-G solvation = -33.954689 kcal Electronic energy + Delta-G solvation = -17854.567895 eV Core-core repulsion = 15116.914789 eV Total energy + Delta-G solvation = -2737.653106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.53277 -36.65328 -33.75262 -31.98804 -31.80430 -29.25899 -27.27086 -26.58336 -25.23855 -22.87863 -20.88607 -20.30907 -19.00388 -16.97964 -16.05990 -15.58807 -15.49263 -15.13267 -14.60520 -14.36100 -13.97663 -13.74682 -13.70005 -13.39104 -12.79548 -12.45128 -12.19666 -11.96393 -11.70752 -11.58609 -11.41082 -11.23852 -10.93089 -10.87780 -10.77969 -10.41651 -10.07325 -9.99273 -9.82317 -9.25076 -8.81500 -8.36292 -8.02519 -7.71767 -7.48809 -5.98748 -4.05745 1.52555 2.48302 3.30407 3.37689 3.42457 4.29220 4.42900 4.53518 4.82142 4.91281 4.93433 5.11003 5.18671 5.29095 5.32576 5.44644 5.47614 5.68233 5.87490 5.95734 6.14940 6.20582 6.24072 6.49991 6.58735 6.60383 6.84338 6.87243 6.95449 7.23369 7.53214 7.63447 7.80457 7.91815 7.98783 8.32042 8.53986 8.98316 9.60084 11.08323 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.004826 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.704775 B = 5799.997629 C = 6393.345151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.229 6.229 3 C -0.116 4.116 4 C 0.152 3.848 5 C -0.130 4.130 6 O -0.542 6.542 7 C 0.038 3.962 8 N -0.671 5.671 9 C 0.106 3.894 10 C 0.048 3.952 11 C -0.490 4.490 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.882 5.882 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.271 1.271 19 C -0.200 4.200 20 C -0.157 4.157 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.372 0.628 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.355 0.645 33 H 0.029 0.971 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 -8.346 -4.345 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S -0.003 6.003 3 C -0.266 4.266 4 C 0.109 3.891 5 C -0.187 4.187 6 O -0.347 6.347 7 C -0.094 4.094 8 N -0.304 5.304 9 C -0.023 4.023 10 C 0.047 3.953 11 C -0.528 4.528 12 H 0.078 0.922 13 C -0.134 4.134 14 N -0.519 5.519 15 Si 0.714 3.286 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.238 4.238 20 C -0.195 4.195 21 H 0.117 0.883 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.218 0.782 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.519 -9.556 -5.282 16.611 hybrid contribution -1.219 1.716 2.174 3.026 sum -13.737 -7.840 -3.108 16.119 Atomic orbital electron populations 1.23455 0.96293 1.06208 1.04539 1.87141 1.04828 1.10414 1.97892 1.24308 1.01708 0.95351 1.05195 1.20984 0.87354 0.93648 0.87076 1.21658 1.03197 0.99432 0.94437 1.86648 1.69942 1.63226 1.14854 1.22544 0.92161 0.93892 1.00797 1.60362 1.08060 1.14897 1.47078 1.21457 0.97010 0.86197 0.97596 1.18720 0.89219 0.97131 0.90201 1.20488 1.36491 0.99830 0.95957 0.92157 1.24999 0.95061 0.94948 0.98364 1.70007 1.45925 1.04293 1.31696 0.86685 0.79304 0.79284 0.83355 1.20758 1.21416 1.19622 1.22863 1.01469 1.01393 0.98026 1.22504 1.02813 0.90019 1.04175 0.88301 0.90865 0.90820 0.90168 0.89373 0.90045 0.91796 0.91682 0.78150 0.96068 0.91074 0.82441 0.95298 0.94468 0.93218 0.90939 0.91797 0.92444 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 10.76 101.05 1.09 -0.01 16 2 S -0.23 -2.63 20.34 -107.50 -2.19 -4.82 16 3 C -0.12 -1.28 5.16 37.15 0.19 -1.09 16 4 C 0.15 2.03 0.84 -90.62 -0.08 1.96 16 5 C -0.13 -1.81 8.46 37.16 0.31 -1.50 16 6 O -0.54 -7.99 11.79 -35.23 -0.42 -8.40 16 7 C 0.04 0.58 4.83 -3.83 -0.02 0.56 16 8 N -0.67 -12.80 6.05 -113.78 -0.69 -13.49 16 9 C 0.11 2.34 5.54 -3.83 -0.02 2.31 16 10 C 0.05 1.18 1.64 -155.66 -0.26 0.92 16 11 C -0.49 -13.15 8.34 -34.44 -0.29 -13.44 16 12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.86 5.43 -17.82 -0.10 1.77 16 14 N -0.88 -24.75 12.67 55.43 0.70 -24.05 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.20 -4.53 9.96 -26.69 -0.27 -4.79 16 20 C -0.16 -3.77 9.16 -26.69 -0.24 -4.02 16 21 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 22 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 27 H 0.06 0.88 6.54 -51.93 -0.34 0.55 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.37 4.45 9.05 45.56 0.41 4.86 16 30 H 0.02 0.32 8.13 -51.92 -0.42 -0.11 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.35 7.33 7.41 -39.29 -0.29 7.04 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -28.67 332.78 -8.36 -37.03 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.09 Total: 10.10 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 0.33 Total: -17.33 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.01 Total: -37.55 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.42 Total: -8.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.19 Total: -4.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.67 -8.36 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230169359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.077 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds