Wall clock time and date at job start Mon Mar 30 2020 04:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00177 * 2 1 4 4 C 1.52995 * 109.47456 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47301 * 54.99820 * 4 3 2 6 6 O 1.42902 * 109.46923 * 294.99919 * 4 3 2 7 7 C 1.52997 * 109.47612 * 174.99988 * 4 3 2 8 8 N 1.46899 * 109.47691 * 174.48865 * 7 4 3 9 9 C 1.46893 * 111.00147 * 184.42943 * 8 7 4 10 10 C 1.53002 * 109.47023 * 185.33295 * 9 8 7 11 11 C 1.50702 * 115.55088 * 294.57397 * 10 9 8 12 12 H 1.07998 * 119.99628 * 95.51830 * 11 10 9 13 13 C 1.37878 * 119.99926 * 275.24780 * 11 10 9 14 14 N 1.31506 * 120.00439 * 355.51755 * 13 11 10 15 15 Si 1.86803 * 119.99797 * 175.51685 * 13 11 10 16 16 H 1.48504 * 109.46920 * 89.99621 * 15 13 11 17 17 H 1.48496 * 109.47176 * 209.99856 * 15 13 11 18 18 H 1.48501 * 109.47102 * 330.00108 * 15 13 11 19 19 C 1.53001 * 117.50056 * 80.24704 * 10 9 8 20 20 C 1.53002 * 117.50050 * 148.90850 * 10 9 8 21 21 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46867 * 300.00124 * 1 2 3 23 23 H 1.09001 * 109.46784 * 59.99983 * 1 2 3 24 24 H 1.08999 * 109.47222 * 59.99651 * 3 2 1 25 25 H 1.09008 * 109.47033 * 299.99969 * 3 2 1 26 26 H 1.09005 * 109.47082 * 184.22316 * 5 4 3 27 27 H 1.08998 * 109.47005 * 304.22083 * 5 4 3 28 28 H 1.08992 * 109.47070 * 64.21998 * 5 4 3 29 29 H 0.96702 * 114.00042 * 299.99902 * 6 4 3 30 30 H 1.09008 * 109.47038 * 54.48453 * 7 4 3 31 31 H 1.08999 * 109.46937 * 294.49590 * 7 4 3 32 32 H 1.00903 * 110.99665 * 308.38313 * 8 7 4 33 33 H 1.09000 * 109.47607 * 65.33074 * 9 8 7 34 34 H 1.08999 * 109.47427 * 305.33002 * 9 8 7 35 35 H 0.96998 * 120.00456 * 185.00612 * 14 13 11 36 36 H 1.08998 * 117.49952 * 214.99843 * 19 10 9 37 37 H 1.09003 * 117.49682 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49733 * 359.97438 * 20 10 9 39 39 H 1.08993 * 117.50248 * 144.96894 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.3419 1.1754 -1.1826 6 8 4.2803 1.4278 1.2202 7 6 4.0871 3.4253 -0.1264 8 7 5.5392 3.6038 0.0053 9 6 5.8976 5.0283 -0.0053 10 6 7.4209 5.1710 -0.0004 11 6 8.1159 4.6791 1.2430 12 1 8.5248 3.6800 1.2736 13 6 8.2346 5.5066 2.3395 14 7 7.8207 6.7529 2.2707 15 14 8.9835 4.8572 3.9228 16 1 10.4513 5.0825 3.9050 17 1 8.3873 5.5699 5.0811 18 1 8.7074 3.4029 4.0410 19 6 8.1511 4.9968 -1.3337 20 6 8.0188 6.3881 -0.7092 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8031 2.2371 0.8899 25 1 1.8031 2.2371 -0.8901 26 1 5.4294 1.2359 -1.1404 27 1 4.0339 0.1310 -1.1336 28 1 3.9895 1.6147 -2.1158 29 1 3.9436 1.8670 2.0132 30 1 3.5795 3.9840 0.6601 31 1 3.7626 3.7924 -1.1000 32 1 5.8853 3.1501 0.8375 33 1 5.4844 5.5136 0.8790 34 1 5.4915 5.4985 -0.9008 35 1 7.9697 7.3553 3.0162 36 1 9.1341 4.5263 -1.3114 37 1 7.5461 4.7809 -2.2143 38 1 7.3268 7.0869 -1.1793 39 1 8.9144 6.8332 -0.2760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230169359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:07 Heat of formation + Delta-G solvation = -52.954991 kcal Electronic energy + Delta-G solvation = -17855.391810 eV Core-core repulsion = 15116.914789 eV Total energy + Delta-G solvation = -2738.477020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.73178 -38.42042 -35.20782 -33.93009 -33.09239 -29.92202 -28.29166 -28.12677 -27.14790 -24.36856 -22.76335 -21.48760 -20.85284 -18.12739 -17.87729 -16.76772 -16.68012 -16.52029 -16.23906 -15.70799 -15.42029 -15.10070 -14.65991 -14.38336 -14.32151 -13.61282 -13.42327 -13.18953 -13.14281 -12.97532 -12.83532 -12.81450 -12.71272 -12.52432 -12.30524 -11.96126 -11.93390 -11.31028 -10.92055 -10.79900 -10.72107 -10.34257 -9.89984 -9.06250 -8.58021 -8.06016 -6.17887 0.72509 1.41203 1.44046 1.53603 1.72275 2.44666 3.14995 3.21200 3.44739 3.67327 3.87765 3.98038 4.01253 4.30444 4.35161 4.37413 4.39162 4.53306 4.64901 4.69483 4.76736 4.86056 4.90183 4.99258 5.04156 5.09879 5.11635 5.12454 5.32876 5.45822 5.67594 5.72841 5.83735 6.37467 6.50971 6.66115 6.84607 6.91580 7.50266 9.00395 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.004826 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.704775 B = 5799.997629 C = 6393.345151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.281 6.281 3 C -0.103 4.103 4 C 0.156 3.844 5 C -0.126 4.126 6 O -0.561 6.561 7 C 0.040 3.960 8 N -0.671 5.671 9 C 0.121 3.879 10 C 0.025 3.975 11 C -0.500 4.500 12 H 0.048 0.952 13 C 0.027 3.973 14 N -0.908 5.908 15 Si 0.944 3.056 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.180 4.180 20 C -0.162 4.162 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.381 0.619 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.344 0.656 33 H 0.000 1.000 34 H 0.050 0.950 35 H 0.258 0.742 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.089 -8.975 -4.702 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.055 6.055 3 C -0.252 4.252 4 C 0.115 3.885 5 C -0.184 4.184 6 O -0.368 6.368 7 C -0.092 4.092 8 N -0.303 5.303 9 C -0.008 4.008 10 C 0.024 3.976 11 C -0.538 4.538 12 H 0.067 0.933 13 C -0.173 4.173 14 N -0.546 5.546 15 Si 0.771 3.229 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.217 4.217 20 C -0.200 4.200 21 H 0.127 0.873 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.230 0.770 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.163 0.837 33 H 0.019 0.981 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.086 -10.192 -5.647 18.281 hybrid contribution -0.765 1.873 2.250 3.026 sum -14.851 -8.319 -3.397 17.358 Atomic orbital electron populations 1.23487 0.92693 1.07271 1.05596 1.87323 1.08833 1.11298 1.98055 1.24132 0.99561 0.94984 1.06507 1.20907 0.89098 0.92094 0.86446 1.21623 1.01473 0.99804 0.95489 1.86624 1.70673 1.63703 1.15751 1.22630 0.89595 0.95381 1.01587 1.60319 1.10897 1.12768 1.46330 1.21182 0.95118 0.87747 0.96791 1.18901 0.90806 0.97588 0.90291 1.20678 1.36542 0.99328 0.97297 0.93330 1.25607 0.95644 0.95109 1.00953 1.70103 1.46981 1.05146 1.32410 0.85765 0.78407 0.78757 0.79994 1.20655 1.21147 1.19271 1.22834 1.01243 0.99780 0.97861 1.22405 1.02153 0.90673 1.04779 0.87253 0.89962 0.89573 0.89046 0.87837 0.92629 0.91874 0.90237 0.77021 0.95534 0.89818 0.83671 0.98131 0.93208 0.93321 0.91381 0.89565 0.91143 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 10.76 113.37 1.22 -0.41 16 2 S -0.28 -5.96 20.34 -56.49 -1.15 -7.11 16 3 C -0.10 -2.02 5.16 71.98 0.37 -1.65 16 4 C 0.16 3.96 0.84 -10.80 -0.01 3.95 16 5 C -0.13 -3.39 8.46 71.98 0.61 -2.78 16 6 O -0.56 -16.12 11.79 -148.98 -1.76 -17.88 16 7 C 0.04 1.12 4.83 86.30 0.42 1.54 16 8 N -0.67 -25.13 6.05 -513.90 -3.11 -28.24 16 9 C 0.12 5.25 5.54 86.31 0.48 5.73 16 10 C 0.02 1.21 1.64 -52.93 -0.09 1.12 16 11 C -0.50 -27.09 8.34 25.60 0.21 -26.88 16 12 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 13 C 0.03 1.46 5.43 84.66 0.46 1.92 16 14 N -0.91 -51.45 12.67 21.45 0.27 -51.17 16 15 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C -0.18 -7.96 9.96 30.62 0.30 -7.65 16 20 C -0.16 -7.75 9.16 30.62 0.28 -7.47 16 21 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.76 7.89 -2.38 -0.02 1.74 16 27 H 0.06 1.70 6.54 -2.39 -0.02 1.68 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16 30 H 0.03 0.74 8.13 -2.38 -0.02 0.72 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.34 14.22 7.41 -89.69 -0.66 13.55 16 33 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 35 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 38 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 39 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -60.82 332.78 0.23 -60.60 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.31 Total: 30.99 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 4.26 Total: -32.57 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.84 Total: -79.41 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.76 Total: -17.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -1.15 Total: -7.11 kcal Total: -60.82 0.23 -60.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230169359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.640 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds