Wall clock time and date at job start Mon Mar 30 2020 04:20:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.81401 * 103.00177 * 2 1
4 4 C 1.52995 * 109.47456 * 180.02562 * 3 2 1
5 5 C 1.53005 * 109.47301 * 54.99820 * 4 3 2
6 6 O 1.42902 * 109.46923 * 294.99919 * 4 3 2
7 7 C 1.52997 * 109.47612 * 174.99988 * 4 3 2
8 8 N 1.46899 * 109.47691 * 174.48865 * 7 4 3
9 9 C 1.46893 * 111.00147 * 184.42943 * 8 7 4
10 10 C 1.53002 * 109.47023 * 185.33295 * 9 8 7
11 11 C 1.50702 * 115.55088 * 294.57397 * 10 9 8
12 12 H 1.07998 * 119.99628 * 95.51830 * 11 10 9
13 13 C 1.37878 * 119.99926 * 275.24780 * 11 10 9
14 14 N 1.31506 * 120.00439 * 355.51755 * 13 11 10
15 15 Si 1.86803 * 119.99797 * 175.51685 * 13 11 10
16 16 H 1.48504 * 109.46920 * 89.99621 * 15 13 11
17 17 H 1.48496 * 109.47176 * 209.99856 * 15 13 11
18 18 H 1.48501 * 109.47102 * 330.00108 * 15 13 11
19 19 C 1.53001 * 117.50056 * 80.24704 * 10 9 8
20 20 C 1.53002 * 117.50050 * 148.90850 * 10 9 8
21 21 H 1.09000 * 109.47081 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.46867 * 300.00124 * 1 2 3
23 23 H 1.09001 * 109.46784 * 59.99983 * 1 2 3
24 24 H 1.08999 * 109.47222 * 59.99651 * 3 2 1
25 25 H 1.09008 * 109.47033 * 299.99969 * 3 2 1
26 26 H 1.09005 * 109.47082 * 184.22316 * 5 4 3
27 27 H 1.08998 * 109.47005 * 304.22083 * 5 4 3
28 28 H 1.08992 * 109.47070 * 64.21998 * 5 4 3
29 29 H 0.96702 * 114.00042 * 299.99902 * 6 4 3
30 30 H 1.09008 * 109.47038 * 54.48453 * 7 4 3
31 31 H 1.08999 * 109.46937 * 294.49590 * 7 4 3
32 32 H 1.00903 * 110.99665 * 308.38313 * 8 7 4
33 33 H 1.09000 * 109.47607 * 65.33074 * 9 8 7
34 34 H 1.08999 * 109.47427 * 305.33002 * 9 8 7
35 35 H 0.96998 * 120.00456 * 185.00612 * 14 13 11
36 36 H 1.08998 * 117.49952 * 214.99843 * 19 10 9
37 37 H 1.09003 * 117.49682 * 0.02562 * 19 10 9
38 38 H 1.09005 * 117.49733 * 359.97438 * 20 10 9
39 39 H 1.08993 * 117.50248 * 144.96894 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 3.7423 1.9400 -0.0006
5 6 4.3419 1.1754 -1.1826
6 8 4.2803 1.4278 1.2202
7 6 4.0871 3.4253 -0.1264
8 7 5.5392 3.6038 0.0053
9 6 5.8976 5.0283 -0.0053
10 6 7.4209 5.1710 -0.0004
11 6 8.1159 4.6791 1.2430
12 1 8.5248 3.6800 1.2736
13 6 8.2346 5.5066 2.3395
14 7 7.8207 6.7529 2.2707
15 14 8.9835 4.8572 3.9228
16 1 10.4513 5.0825 3.9050
17 1 8.3873 5.5699 5.0811
18 1 8.7074 3.4029 4.0410
19 6 8.1511 4.9968 -1.3337
20 6 8.0188 6.3881 -0.7092
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8031 2.2371 0.8899
25 1 1.8031 2.2371 -0.8901
26 1 5.4294 1.2359 -1.1404
27 1 4.0339 0.1310 -1.1336
28 1 3.9895 1.6147 -2.1158
29 1 3.9436 1.8670 2.0132
30 1 3.5795 3.9840 0.6601
31 1 3.7626 3.7924 -1.1000
32 1 5.8853 3.1501 0.8375
33 1 5.4844 5.5136 0.8790
34 1 5.4915 5.4985 -0.9008
35 1 7.9697 7.3553 3.0162
36 1 9.1341 4.5263 -1.3114
37 1 7.5461 4.7809 -2.2143
38 1 7.3268 7.0869 -1.1793
39 1 8.9144 6.8332 -0.2760
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000230169359.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:20:07
Heat of formation + Delta-G solvation = -52.954991 kcal
Electronic energy + Delta-G solvation = -17855.391810 eV
Core-core repulsion = 15116.914789 eV
Total energy + Delta-G solvation = -2738.477020 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.73178 -38.42042 -35.20782 -33.93009 -33.09239 -29.92202 -28.29166 -28.12677
-27.14790 -24.36856 -22.76335 -21.48760 -20.85284 -18.12739 -17.87729 -16.76772
-16.68012 -16.52029 -16.23906 -15.70799 -15.42029 -15.10070 -14.65991 -14.38336
-14.32151 -13.61282 -13.42327 -13.18953 -13.14281 -12.97532 -12.83532 -12.81450
-12.71272 -12.52432 -12.30524 -11.96126 -11.93390 -11.31028 -10.92055 -10.79900
-10.72107 -10.34257 -9.89984 -9.06250 -8.58021 -8.06016 -6.17887 0.72509
1.41203 1.44046 1.53603 1.72275 2.44666 3.14995 3.21200 3.44739
3.67327 3.87765 3.98038 4.01253 4.30444 4.35161 4.37413 4.39162
4.53306 4.64901 4.69483 4.76736 4.86056 4.90183 4.99258 5.04156
5.09879 5.11635 5.12454 5.32876 5.45822 5.67594 5.72841 5.83735
6.37467 6.50971 6.66115 6.84607 6.91580 7.50266 9.00395
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.025999 B = 0.004826 C = 0.004379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.704775 B = 5799.997629 C = 6393.345151
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 S -0.281 6.281
3 C -0.103 4.103
4 C 0.156 3.844
5 C -0.126 4.126
6 O -0.561 6.561
7 C 0.040 3.960
8 N -0.671 5.671
9 C 0.121 3.879
10 C 0.025 3.975
11 C -0.500 4.500
12 H 0.048 0.952
13 C 0.027 3.973
14 N -0.908 5.908
15 Si 0.944 3.056
16 H -0.281 1.281
17 H -0.286 1.286
18 H -0.268 1.268
19 C -0.180 4.180
20 C -0.162 4.162
21 H 0.109 0.891
22 H 0.081 0.919
23 H 0.085 0.915
24 H 0.091 0.909
25 H 0.103 0.897
26 H 0.055 0.945
27 H 0.062 0.938
28 H 0.079 0.921
29 H 0.381 0.619
30 H 0.027 0.973
31 H 0.083 0.917
32 H 0.344 0.656
33 H 0.000 1.000
34 H 0.050 0.950
35 H 0.258 0.742
36 H 0.068 0.932
37 H 0.086 0.914
38 H 0.070 0.930
39 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.089 -8.975 -4.702 18.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.290 4.290
2 S -0.055 6.055
3 C -0.252 4.252
4 C 0.115 3.885
5 C -0.184 4.184
6 O -0.368 6.368
7 C -0.092 4.092
8 N -0.303 5.303
9 C -0.008 4.008
10 C 0.024 3.976
11 C -0.538 4.538
12 H 0.067 0.933
13 C -0.173 4.173
14 N -0.546 5.546
15 Si 0.771 3.229
16 H -0.207 1.207
17 H -0.211 1.211
18 H -0.193 1.193
19 C -0.217 4.217
20 C -0.200 4.200
21 H 0.127 0.873
22 H 0.100 0.900
23 H 0.104 0.896
24 H 0.110 0.890
25 H 0.122 0.878
26 H 0.074 0.926
27 H 0.081 0.919
28 H 0.098 0.902
29 H 0.230 0.770
30 H 0.045 0.955
31 H 0.102 0.898
32 H 0.163 0.837
33 H 0.019 0.981
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.086 0.914
37 H 0.104 0.896
38 H 0.089 0.911
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -14.086 -10.192 -5.647 18.281
hybrid contribution -0.765 1.873 2.250 3.026
sum -14.851 -8.319 -3.397 17.358
Atomic orbital electron populations
1.23487 0.92693 1.07271 1.05596 1.87323 1.08833 1.11298 1.98055
1.24132 0.99561 0.94984 1.06507 1.20907 0.89098 0.92094 0.86446
1.21623 1.01473 0.99804 0.95489 1.86624 1.70673 1.63703 1.15751
1.22630 0.89595 0.95381 1.01587 1.60319 1.10897 1.12768 1.46330
1.21182 0.95118 0.87747 0.96791 1.18901 0.90806 0.97588 0.90291
1.20678 1.36542 0.99328 0.97297 0.93330 1.25607 0.95644 0.95109
1.00953 1.70103 1.46981 1.05146 1.32410 0.85765 0.78407 0.78757
0.79994 1.20655 1.21147 1.19271 1.22834 1.01243 0.99780 0.97861
1.22405 1.02153 0.90673 1.04779 0.87253 0.89962 0.89573 0.89046
0.87837 0.92629 0.91874 0.90237 0.77021 0.95534 0.89818 0.83671
0.98131 0.93208 0.93321 0.91381 0.89565 0.91143 0.92589
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.63 10.76 113.37 1.22 -0.41 16
2 S -0.28 -5.96 20.34 -56.49 -1.15 -7.11 16
3 C -0.10 -2.02 5.16 71.98 0.37 -1.65 16
4 C 0.16 3.96 0.84 -10.80 -0.01 3.95 16
5 C -0.13 -3.39 8.46 71.98 0.61 -2.78 16
6 O -0.56 -16.12 11.79 -148.98 -1.76 -17.88 16
7 C 0.04 1.12 4.83 86.30 0.42 1.54 16
8 N -0.67 -25.13 6.05 -513.90 -3.11 -28.24 16
9 C 0.12 5.25 5.54 86.31 0.48 5.73 16
10 C 0.02 1.21 1.64 -52.93 -0.09 1.12 16
11 C -0.50 -27.09 8.34 25.60 0.21 -26.88 16
12 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16
13 C 0.03 1.46 5.43 84.66 0.46 1.92 16
14 N -0.91 -51.45 12.67 21.45 0.27 -51.17 16
15 Si 0.94 43.36 29.54 68.60 2.03 45.39 16
16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
17 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16
18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
19 C -0.18 -7.96 9.96 30.62 0.30 -7.65 16
20 C -0.16 -7.75 9.16 30.62 0.28 -7.47 16
21 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16
22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16
25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
26 H 0.05 1.76 7.89 -2.38 -0.02 1.74 16
27 H 0.06 1.70 6.54 -2.39 -0.02 1.68 16
28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
29 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16
30 H 0.03 0.74 8.13 -2.38 -0.02 0.72 16
31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
32 H 0.34 14.22 7.41 -89.69 -0.66 13.55 16
33 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
34 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16
35 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16
36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16
37 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16
38 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16
39 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16
Total: -1.00 -60.82 332.78 0.23 -60.60
By element:
Atomic # 1 Polarization: 31.31 SS G_CDS: -0.31 Total: 30.99 kcal
Atomic # 6 Polarization: -36.83 SS G_CDS: 4.26 Total: -32.57 kcal
Atomic # 7 Polarization: -76.58 SS G_CDS: -2.84 Total: -79.41 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: -1.76 Total: -17.88 kcal
Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal
Atomic # 16 Polarization: -5.96 SS G_CDS: -1.15 Total: -7.11 kcal
Total: -60.82 0.23 -60.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230169359.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.640 kcal
(2) G-P(sol) polarization free energy of solvation -60.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.955 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds