Wall clock time and date at job start Mon Mar 30 2020 05:23:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52992 * 109.47693 * 2 1
4 4 H 1.09008 * 109.47201 * 305.00126 * 3 2 1
5 5 N 1.46900 * 109.47010 * 64.99871 * 3 2 1
6 6 C 1.50694 * 109.47511 * 185.00215 * 3 2 1
7 7 C 1.38336 * 119.91027 * 279.72506 * 6 3 2
8 8 C 1.38043 * 120.09252 * 179.76340 * 7 6 3
9 9 C 1.39087 * 119.91057 * 0.50877 * 8 7 6
10 10 N 1.39290 * 120.09023 * 179.76728 * 9 8 7
11 11 C 1.36846 * 120.00301 * 359.97438 * 10 9 8
12 12 H 1.08001 * 119.99869 * 323.83986 * 11 10 9
13 13 C 1.38793 * 120.00558 * 143.83848 * 11 10 9
14 14 N 1.31587 * 120.00321 * 154.54114 * 13 11 10
15 15 Si 1.86806 * 119.99689 * 334.54834 * 13 11 10
16 16 H 1.48495 * 109.47317 * 94.46367 * 15 13 11
17 17 H 1.48503 * 109.46761 * 214.46841 * 15 13 11
18 18 H 1.48502 * 109.46698 * 334.46178 * 15 13 11
19 19 C 1.46506 * 119.99948 * 179.97438 * 10 9 8
20 20 C 1.47201 * 109.47150 * 88.43220 * 19 10 9
21 21 N 8.57060 * 146.36537 * 334.17354 * 2 1 3
22 22 C 1.39083 * 119.81810 * 359.74810 * 9 8 7
23 23 C 1.38053 * 119.90718 * 359.97438 * 22 9 8
24 24 H 1.09004 * 109.46800 * 59.99430 * 1 2 3
25 25 H 1.08996 * 109.46819 * 300.00637 * 1 2 3
26 26 H 1.08997 * 109.47905 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46800 * 120.00570 * 2 1 3
28 28 H 1.09002 * 109.46848 * 240.00081 * 2 1 3
29 29 H 1.00900 * 111.00122 * 296.04531 * 5 3 2
30 30 H 1.00895 * 111.00226 * 60.00132 * 5 3 2
31 31 H 1.08000 * 119.94874 * 359.97438 * 7 6 3
32 32 H 1.08001 * 120.04744 * 180.25357 * 8 7 6
33 33 H 0.97001 * 120.00226 * 179.97438 * 14 13 11
34 34 H 1.08997 * 109.47192 * 208.43433 * 19 10 9
35 35 H 1.08998 * 109.46922 * 328.43119 * 19 10 9
36 36 H 1.08001 * 120.04513 * 179.97438 * 22 9 8
37 37 H 1.08001 * 119.94962 * 180.02562 * 23 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8419
5 7 1.6515 2.0992 1.2552
6 6 3.5420 1.4441 -0.1239
7 6 4.3263 1.2081 0.9909
8 6 5.7024 1.2040 0.8808
9 6 6.3002 1.4481 -0.3511
10 7 7.6884 1.4497 -0.4655
11 6 8.4660 1.2113 0.6350
12 1 8.1601 1.5809 1.6027
13 6 9.6478 0.4947 0.5079
14 7 10.6212 0.6716 1.3755
15 14 9.8565 -0.7210 -0.8951
16 1 10.5409 -0.0530 -2.0311
17 1 10.6720 -1.8733 -0.4342
18 1 8.5225 -1.2029 -1.3349
19 6 8.3161 1.7065 -1.7642
20 6 8.5135 3.1550 -1.9359
21 7 8.6658 4.2730 -2.0681
22 6 5.5082 1.6903 -1.4684
23 6 4.1327 1.6869 -1.3509
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3633 0.5139 0.8899
26 1 -0.3635 -1.0276 -0.0005
27 1 1.8933 -0.5139 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 0.6478 2.1684 1.3315
30 1 2.0423 1.6179 2.0512
31 1 3.8613 1.0234 1.9480
32 1 6.3140 1.0156 1.7507
33 1 11.4470 0.1704 1.2869
34 1 9.2806 1.2006 -1.8079
35 1 7.6724 1.3307 -2.5594
36 1 5.9686 1.8806 -2.4266
37 1 3.5169 1.8744 -2.2181
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000233888343.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:09
Heat of formation + Delta-G solvation = 67.204973 kcal
Electronic energy + Delta-G solvation = -18798.131042 eV
Core-core repulsion = 15961.713349 eV
Total energy + Delta-G solvation = -2836.417694 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.24305 -37.48860 -35.83103 -34.81007 -32.30651 -30.86394 -30.38337 -29.22931
-27.61930 -25.44742 -23.51024 -21.95823 -21.12697 -19.61924 -18.31275 -17.14718
-16.62100 -15.82356 -15.44822 -14.94842 -14.36885 -14.27246 -13.92218 -13.72095
-13.47577 -13.09368 -12.84358 -12.63550 -12.48570 -12.32999 -12.09066 -11.87233
-11.74158 -11.54870 -11.36053 -11.03165 -10.85146 -10.55344 -10.43598 -10.14199
-9.96825 -9.48021 -8.74498 -8.50738 -8.15866 -6.75409 -6.59116 -4.03419
2.24042 2.30279 2.90818 3.10319 3.16896 3.20294 3.35790 3.99624
4.41097 4.45007 4.63841 4.82643 4.93427 5.04310 5.06691 5.12741
5.46163 5.53399 5.62601 5.67346 5.72836 5.76379 5.83307 5.91569
6.08170 6.16219 6.22567 6.49876 6.55224 6.79748 7.11093 7.16406
7.26738 7.44914 7.56296 7.59671 7.68734 8.04287 8.11174 8.41384
9.04794 9.29150 10.51669
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.024765 B = 0.005487 C = 0.005089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.366086 B = 5101.868306 C = 5500.384852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.155 4.155
3 C 0.148 3.852
4 H 0.076 0.924
5 N -0.841 5.841
6 C -0.172 4.172
7 C -0.058 4.058
8 C -0.184 4.184
9 C 0.220 3.780
10 N -0.470 5.470
11 C -0.325 4.325
12 H 0.105 0.895
13 C 0.061 3.939
14 N -0.853 5.853
15 Si 0.860 3.140
16 H -0.272 1.272
17 H -0.282 1.282
18 H -0.253 1.253
19 C 0.192 3.808
20 C 0.208 3.792
21 N -0.448 5.448
22 C -0.229 4.229
23 C -0.063 4.063
24 H 0.053 0.947
25 H 0.050 0.950
26 H 0.052 0.948
27 H 0.061 0.939
28 H 0.067 0.933
29 H 0.333 0.667
30 H 0.338 0.662
31 H 0.104 0.896
32 H 0.127 0.873
33 H 0.277 0.723
34 H 0.108 0.892
35 H 0.108 0.892
36 H 0.108 0.892
37 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.821 -4.396 -4.109 15.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.195 4.195
3 C 0.036 3.964
4 H 0.094 0.906
5 N -0.370 5.370
6 C -0.175 4.175
7 C -0.077 4.077
8 C -0.207 4.207
9 C 0.111 3.889
10 N -0.164 5.164
11 C -0.451 4.451
12 H 0.122 0.878
13 C -0.147 4.147
14 N -0.486 5.486
15 Si 0.686 3.314
16 H -0.199 1.199
17 H -0.208 1.208
18 H -0.177 1.177
19 C 0.064 3.936
20 C -0.112 4.112
21 N -0.127 5.127
22 C -0.253 4.253
23 C -0.082 4.082
24 H 0.073 0.927
25 H 0.069 0.931
26 H 0.071 0.929
27 H 0.079 0.921
28 H 0.086 0.914
29 H 0.146 0.854
30 H 0.152 0.848
31 H 0.122 0.878
32 H 0.144 0.856
33 H 0.087 0.913
34 H 0.126 0.874
35 H 0.126 0.874
36 H 0.126 0.874
37 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -12.717 -2.156 -4.483 13.656
hybrid contribution -0.090 -2.011 -0.316 2.038
sum -12.808 -4.167 -4.799 14.298
Atomic orbital electron populations
1.21821 0.96411 1.01458 1.01434 1.22384 0.95146 0.99138 1.02813
1.20107 0.92540 0.91201 0.92528 0.90607 1.58965 1.15159 1.58644
1.04271 1.19080 0.93213 1.11122 0.94100 1.20437 0.92918 0.97628
0.96761 1.20659 0.93991 1.09064 0.97013 1.18052 0.83339 0.93792
0.93705 1.42263 1.01225 1.66457 1.06499 1.18925 1.03084 1.34504
0.88628 0.87761 1.25379 0.95085 0.96765 0.97460 1.69874 1.03770
1.37860 1.37112 0.87200 0.79652 0.82454 0.82105 1.19887 1.20829
1.17683 1.19399 1.01165 0.83028 0.89999 1.30262 0.92467 0.96056
0.92396 1.81022 1.09527 1.12993 1.09113 1.20459 0.93661 1.14018
0.97122 1.20388 0.93697 0.98111 0.96041 0.92741 0.93135 0.92896
0.92052 0.91384 0.85443 0.84815 0.87800 0.85563 0.91312 0.87434
0.87449 0.87377 0.87713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.34 9.68 37.16 0.36 -0.98 16
2 C -0.16 -1.69 5.56 -26.73 -0.15 -1.84 16
3 C 0.15 1.86 3.04 -68.87 -0.21 1.65 16
4 H 0.08 0.95 8.00 -51.92 -0.42 0.53 16
5 N -0.84 -9.91 9.00 -5.66 -0.05 -9.96 16
6 C -0.17 -2.72 4.96 -104.56 -0.52 -3.24 16
7 C -0.06 -0.99 9.29 -39.62 -0.37 -1.36 16
8 C -0.18 -3.67 9.26 -39.34 -0.36 -4.03 16
9 C 0.22 4.51 6.51 -83.84 -0.55 3.96 16
10 N -0.47 -10.29 2.26 -116.25 -0.26 -10.55 16
11 C -0.32 -8.09 8.94 -15.11 -0.14 -8.22 16
12 H 0.10 2.83 6.93 -52.49 -0.36 2.46 16
13 C 0.06 1.52 5.24 -17.45 -0.09 1.42 16
14 N -0.85 -22.86 13.97 55.49 0.77 -22.09 16
15 Si 0.86 18.22 25.25 -169.99 -4.29 13.93 16
16 H -0.27 -5.37 6.59 56.52 0.37 -5.00 16
17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
18 H -0.25 -5.23 7.11 56.52 0.40 -4.83 16
19 C 0.19 3.67 4.38 -6.82 -0.03 3.64 16
20 C 0.21 4.25 15.77 -20.76 -0.33 3.93 16
21 N -0.45 -9.83 18.54 42.16 0.78 -9.05 16
22 C -0.23 -4.14 9.20 -39.34 -0.36 -4.50 16
23 C -0.06 -1.03 9.66 -39.62 -0.38 -1.41 16
24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
25 H 0.05 0.40 6.87 -51.93 -0.36 0.04 16
26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
29 H 0.33 3.18 7.55 -39.29 -0.30 2.89 16
30 H 0.34 3.81 7.33 -39.29 -0.29 3.52 16
31 H 0.10 1.54 6.64 -52.49 -0.35 1.19 16
32 H 0.13 2.63 6.42 -52.49 -0.34 2.30 16
33 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16
34 H 0.11 2.10 3.37 -51.93 -0.18 1.93 16
35 H 0.11 1.66 6.28 -51.93 -0.33 1.33 16
36 H 0.11 1.76 6.18 -52.49 -0.32 1.44 16
37 H 0.10 1.45 8.03 -52.49 -0.42 1.03 16
LS Contribution 305.79 15.07 4.61 4.61
Total: -1.00 -27.65 305.79 -6.07 -33.72
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: -4.51 Total: 10.38 kcal
Atomic # 6 Polarization: -7.86 SS G_CDS: -3.12 Total: -10.99 kcal
Atomic # 7 Polarization: -52.89 SS G_CDS: 1.24 Total: -51.65 kcal
Atomic # 14 Polarization: 18.22 SS G_CDS: -4.29 Total: 13.93 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -27.65 -6.07 -33.72 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233888343.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.925 kcal
(2) G-P(sol) polarization free energy of solvation -27.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds