Wall clock time and date at job start Mon Mar 30 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47693 * 2 1 4 4 H 1.09008 * 109.47201 * 305.00126 * 3 2 1 5 5 N 1.46900 * 109.47010 * 64.99871 * 3 2 1 6 6 C 1.50694 * 109.47511 * 185.00215 * 3 2 1 7 7 C 1.38336 * 119.91027 * 279.72506 * 6 3 2 8 8 C 1.38043 * 120.09252 * 179.76340 * 7 6 3 9 9 C 1.39087 * 119.91057 * 0.50877 * 8 7 6 10 10 N 1.39290 * 120.09023 * 179.76728 * 9 8 7 11 11 C 1.36846 * 120.00301 * 359.97438 * 10 9 8 12 12 H 1.08001 * 119.99869 * 323.83986 * 11 10 9 13 13 C 1.38793 * 120.00558 * 143.83848 * 11 10 9 14 14 N 1.31587 * 120.00321 * 154.54114 * 13 11 10 15 15 Si 1.86806 * 119.99689 * 334.54834 * 13 11 10 16 16 H 1.48495 * 109.47317 * 94.46367 * 15 13 11 17 17 H 1.48503 * 109.46761 * 214.46841 * 15 13 11 18 18 H 1.48502 * 109.46698 * 334.46178 * 15 13 11 19 19 C 1.46506 * 119.99948 * 179.97438 * 10 9 8 20 20 C 1.47201 * 109.47150 * 88.43220 * 19 10 9 21 21 N 8.57060 * 146.36537 * 334.17354 * 2 1 3 22 22 C 1.39083 * 119.81810 * 359.74810 * 9 8 7 23 23 C 1.38053 * 119.90718 * 359.97438 * 22 9 8 24 24 H 1.09004 * 109.46800 * 59.99430 * 1 2 3 25 25 H 1.08996 * 109.46819 * 300.00637 * 1 2 3 26 26 H 1.08997 * 109.47905 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46800 * 120.00570 * 2 1 3 28 28 H 1.09002 * 109.46848 * 240.00081 * 2 1 3 29 29 H 1.00900 * 111.00122 * 296.04531 * 5 3 2 30 30 H 1.00895 * 111.00226 * 60.00132 * 5 3 2 31 31 H 1.08000 * 119.94874 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.04744 * 180.25357 * 8 7 6 33 33 H 0.97001 * 120.00226 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47192 * 208.43433 * 19 10 9 35 35 H 1.08998 * 109.46922 * 328.43119 * 19 10 9 36 36 H 1.08001 * 120.04513 * 179.97438 * 22 9 8 37 37 H 1.08001 * 119.94962 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6515 2.0992 1.2552 6 6 3.5420 1.4441 -0.1239 7 6 4.3263 1.2081 0.9909 8 6 5.7024 1.2040 0.8808 9 6 6.3002 1.4481 -0.3511 10 7 7.6884 1.4497 -0.4655 11 6 8.4660 1.2113 0.6350 12 1 8.1601 1.5809 1.6027 13 6 9.6478 0.4947 0.5079 14 7 10.6212 0.6716 1.3755 15 14 9.8565 -0.7210 -0.8951 16 1 10.5409 -0.0530 -2.0311 17 1 10.6720 -1.8733 -0.4342 18 1 8.5225 -1.2029 -1.3349 19 6 8.3161 1.7065 -1.7642 20 6 8.5135 3.1550 -1.9359 21 7 8.6658 4.2730 -2.0681 22 6 5.5082 1.6903 -1.4684 23 6 4.1327 1.6869 -1.3509 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.6478 2.1684 1.3315 30 1 2.0423 1.6179 2.0512 31 1 3.8613 1.0234 1.9480 32 1 6.3140 1.0156 1.7507 33 1 11.4470 0.1704 1.2869 34 1 9.2806 1.2006 -1.8079 35 1 7.6724 1.3307 -2.5594 36 1 5.9686 1.8806 -2.4266 37 1 3.5169 1.8744 -2.2181 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233888343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:09 Heat of formation + Delta-G solvation = 67.204973 kcal Electronic energy + Delta-G solvation = -18798.131042 eV Core-core repulsion = 15961.713349 eV Total energy + Delta-G solvation = -2836.417694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.24305 -37.48860 -35.83103 -34.81007 -32.30651 -30.86394 -30.38337 -29.22931 -27.61930 -25.44742 -23.51024 -21.95823 -21.12697 -19.61924 -18.31275 -17.14718 -16.62100 -15.82356 -15.44822 -14.94842 -14.36885 -14.27246 -13.92218 -13.72095 -13.47577 -13.09368 -12.84358 -12.63550 -12.48570 -12.32999 -12.09066 -11.87233 -11.74158 -11.54870 -11.36053 -11.03165 -10.85146 -10.55344 -10.43598 -10.14199 -9.96825 -9.48021 -8.74498 -8.50738 -8.15866 -6.75409 -6.59116 -4.03419 2.24042 2.30279 2.90818 3.10319 3.16896 3.20294 3.35790 3.99624 4.41097 4.45007 4.63841 4.82643 4.93427 5.04310 5.06691 5.12741 5.46163 5.53399 5.62601 5.67346 5.72836 5.76379 5.83307 5.91569 6.08170 6.16219 6.22567 6.49876 6.55224 6.79748 7.11093 7.16406 7.26738 7.44914 7.56296 7.59671 7.68734 8.04287 8.11174 8.41384 9.04794 9.29150 10.51669 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.005487 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.366086 B = 5101.868306 C = 5500.384852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C 0.148 3.852 4 H 0.076 0.924 5 N -0.841 5.841 6 C -0.172 4.172 7 C -0.058 4.058 8 C -0.184 4.184 9 C 0.220 3.780 10 N -0.470 5.470 11 C -0.325 4.325 12 H 0.105 0.895 13 C 0.061 3.939 14 N -0.853 5.853 15 Si 0.860 3.140 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.253 1.253 19 C 0.192 3.808 20 C 0.208 3.792 21 N -0.448 5.448 22 C -0.229 4.229 23 C -0.063 4.063 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.333 0.667 30 H 0.338 0.662 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.277 0.723 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 -4.396 -4.109 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.036 3.964 4 H 0.094 0.906 5 N -0.370 5.370 6 C -0.175 4.175 7 C -0.077 4.077 8 C -0.207 4.207 9 C 0.111 3.889 10 N -0.164 5.164 11 C -0.451 4.451 12 H 0.122 0.878 13 C -0.147 4.147 14 N -0.486 5.486 15 Si 0.686 3.314 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.177 1.177 19 C 0.064 3.936 20 C -0.112 4.112 21 N -0.127 5.127 22 C -0.253 4.253 23 C -0.082 4.082 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.717 -2.156 -4.483 13.656 hybrid contribution -0.090 -2.011 -0.316 2.038 sum -12.808 -4.167 -4.799 14.298 Atomic orbital electron populations 1.21821 0.96411 1.01458 1.01434 1.22384 0.95146 0.99138 1.02813 1.20107 0.92540 0.91201 0.92528 0.90607 1.58965 1.15159 1.58644 1.04271 1.19080 0.93213 1.11122 0.94100 1.20437 0.92918 0.97628 0.96761 1.20659 0.93991 1.09064 0.97013 1.18052 0.83339 0.93792 0.93705 1.42263 1.01225 1.66457 1.06499 1.18925 1.03084 1.34504 0.88628 0.87761 1.25379 0.95085 0.96765 0.97460 1.69874 1.03770 1.37860 1.37112 0.87200 0.79652 0.82454 0.82105 1.19887 1.20829 1.17683 1.19399 1.01165 0.83028 0.89999 1.30262 0.92467 0.96056 0.92396 1.81022 1.09527 1.12993 1.09113 1.20459 0.93661 1.14018 0.97122 1.20388 0.93697 0.98111 0.96041 0.92741 0.93135 0.92896 0.92052 0.91384 0.85443 0.84815 0.87800 0.85563 0.91312 0.87434 0.87449 0.87377 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.68 37.16 0.36 -0.98 16 2 C -0.16 -1.69 5.56 -26.73 -0.15 -1.84 16 3 C 0.15 1.86 3.04 -68.87 -0.21 1.65 16 4 H 0.08 0.95 8.00 -51.92 -0.42 0.53 16 5 N -0.84 -9.91 9.00 -5.66 -0.05 -9.96 16 6 C -0.17 -2.72 4.96 -104.56 -0.52 -3.24 16 7 C -0.06 -0.99 9.29 -39.62 -0.37 -1.36 16 8 C -0.18 -3.67 9.26 -39.34 -0.36 -4.03 16 9 C 0.22 4.51 6.51 -83.84 -0.55 3.96 16 10 N -0.47 -10.29 2.26 -116.25 -0.26 -10.55 16 11 C -0.32 -8.09 8.94 -15.11 -0.14 -8.22 16 12 H 0.10 2.83 6.93 -52.49 -0.36 2.46 16 13 C 0.06 1.52 5.24 -17.45 -0.09 1.42 16 14 N -0.85 -22.86 13.97 55.49 0.77 -22.09 16 15 Si 0.86 18.22 25.25 -169.99 -4.29 13.93 16 16 H -0.27 -5.37 6.59 56.52 0.37 -5.00 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.25 -5.23 7.11 56.52 0.40 -4.83 16 19 C 0.19 3.67 4.38 -6.82 -0.03 3.64 16 20 C 0.21 4.25 15.77 -20.76 -0.33 3.93 16 21 N -0.45 -9.83 18.54 42.16 0.78 -9.05 16 22 C -0.23 -4.14 9.20 -39.34 -0.36 -4.50 16 23 C -0.06 -1.03 9.66 -39.62 -0.38 -1.41 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 6.87 -51.93 -0.36 0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.33 3.18 7.55 -39.29 -0.30 2.89 16 30 H 0.34 3.81 7.33 -39.29 -0.29 3.52 16 31 H 0.10 1.54 6.64 -52.49 -0.35 1.19 16 32 H 0.13 2.63 6.42 -52.49 -0.34 2.30 16 33 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.11 2.10 3.37 -51.93 -0.18 1.93 16 35 H 0.11 1.66 6.28 -51.93 -0.33 1.33 16 36 H 0.11 1.76 6.18 -52.49 -0.32 1.44 16 37 H 0.10 1.45 8.03 -52.49 -0.42 1.03 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -27.65 305.79 -6.07 -33.72 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.51 Total: 10.38 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.12 Total: -10.99 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 1.24 Total: -51.65 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.29 Total: 13.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.65 -6.07 -33.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233888343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.925 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds